More than 300 homologs were found in PanDaTox collection
for query gene PP_4989 on replicon NC_002947
Organism: Pseudomonas putida KT2440



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_4989  methyl-accepting chemotaxis sensory transducer  100 
 
 
686 aa  1369    Pseudomonas putida KT2440  Bacteria  normal  0.289293  normal 
 
 
-
 
NC_009439  Pmen_0406  methyl-accepting chemotaxis sensory transducer  75.72 
 
 
678 aa  996    Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_5039  methyl-accepting chemotaxis sensory transducer  98.98 
 
 
686 aa  1357    Pseudomonas putida GB-1  Bacteria  normal  0.468878  normal 
 
 
-
 
NC_004578  PSPTO_5031  type IV pilus biogenesis protein PilJ  80.57 
 
 
680 aa  1037    Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_05360  twitching motility protein PilJ  76.61 
 
 
682 aa  998    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_0491  chemotaxis sensory transducer  79.61 
 
 
680 aa  1028    Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_3770  methyl-accepting chemotaxis sensory transducer  61.7 
 
 
691 aa  748    Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_5305  chemotaxis sensory transducer  81.47 
 
 
686 aa  1076    Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.115158  normal  0.281343 
 
 
-
 
NC_009512  Pput_4863  methyl-accepting chemotaxis sensory transducer  99.13 
 
 
686 aa  1361    Pseudomonas putida F1  Bacteria  normal  decreased coverage  0.0070905 
 
 
-
 
NC_009656  PSPA7_0511  twitching motility protein PilJ  76.46 
 
 
682 aa  996    Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_3631  putative methyl-accepting chemotaxis sensory transducer  55.46 
 
 
731 aa  659    Saccharophagus degradans 2-40  Bacteria  normal  0.455048  normal 
 
 
-
 
NC_010501  PputW619_0475  methyl-accepting chemotaxis sensory transducer  94.46 
 
 
686 aa  1266    Pseudomonas putida W619  Bacteria  normal  0.178091  normal 
 
 
-
 
NC_011901  Tgr7_2901  putative methyl-accepting chemotaxis sensory transducer  52.29 
 
 
700 aa  611  1e-173  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.726182  n/a   
 
 
-
 
NC_010717  PXO_01605  pilus biogenesis protein  46.92 
 
 
678 aa  527  1e-148  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.128934  n/a   
 
 
-
 
NC_013889  TK90_2397  methyl-accepting chemotaxis sensory transducer  46.75 
 
 
686 aa  517  1.0000000000000001e-145  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.688228 
 
 
-
 
NC_011071  Smal_3086  methyl-accepting chemotaxis sensory transducer  48.8 
 
 
678 aa  493  9.999999999999999e-139  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.12197 
 
 
-
 
NC_010513  Xfasm12_1019  putative methyl-accepting chemotaxis sensory transducer  46.08 
 
 
680 aa  476  1e-133  Xylella fastidiosa M12  Bacteria  normal  0.58121  n/a   
 
 
-
 
NC_010577  XfasM23_0895  methyl-accepting chemotaxis sensory transducer  46.03 
 
 
680 aa  477  1e-133  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_013422  Hneap_0517  methyl-accepting chemotaxis sensory transducer  42.58 
 
 
671 aa  447  1.0000000000000001e-124  Halothiobacillus neapolitanus c2  Bacteria  normal  0.104858  n/a   
 
 
-
 
NC_007298  Daro_3896  chemotaxis sensory transducer  40.21 
 
 
706 aa  436  1e-121  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_2549  chemotaxis sensory transducer  40 
 
 
707 aa  426  1e-118  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_007969  Pcryo_2098  methyl-accepting chemotaxis sensory transducer  65.4 
 
 
473 aa  421  1e-116  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc0671  putative twitching motility transmembrane protein  40.21 
 
 
743 aa  416  9.999999999999999e-116  Ralstonia solanacearum GMI1000  Bacteria  normal  0.357708  normal 
 
 
-
 
NC_012856  Rpic12D_0563  methyl-accepting chemotaxis sensory transducer  40.46 
 
 
745 aa  418  9.999999999999999e-116  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_0615  methyl-accepting chemotaxis sensory transducer  40.46 
 
 
745 aa  419  9.999999999999999e-116  Ralstonia pickettii 12J  Bacteria  normal  0.685399  normal 
 
 
-
 
NC_009524  PsycPRwf_2156  methyl-accepting chemotaxis sensory transducer  63.93 
 
 
575 aa  409  1e-113  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_007484  Noc_0128  chemotaxis sensory transducer  57.68 
 
 
537 aa  411  1e-113  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007204  Psyc_1815  putative chemotaxis sensory transducer  62.46 
 
 
475 aa  406  1.0000000000000001e-112  Psychrobacter arcticus 273-4  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A2620  methyl-accepting chemotaxis sensory transducer  37.77 
 
 
733 aa  401  9.999999999999999e-111  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_0672  methyl-accepting chemotaxis sensory transducer  38.79 
 
 
733 aa  399  1e-109  Cupriavidus metallidurans CH34  Bacteria  normal  0.371682  normal  0.522662 
 
 
-
 
NC_008340  Mlg_0358  methyl-accepting chemotaxis sensory transducer  56.94 
 
 
560 aa  388  1e-106  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0237962  normal  0.734928 
 
 
-
 
NC_008786  Veis_3018  methyl-accepting chemotaxis sensory transducer  36.96 
 
 
767 aa  384  1e-105  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.238689  normal  0.701163 
 
 
-
 
NC_008781  Pnap_3351  methyl-accepting chemotaxis sensory transducer  37.71 
 
 
759 aa  385  1e-105  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.335724  normal 
 
 
-
 
NC_007948  Bpro_1139  methyl-accepting chemotaxis sensory transducer  37.59 
 
 
692 aa  382  1e-105  Polaromonas sp. JS666  Bacteria  normal  normal  0.534971 
 
 
-
 
NC_008752  Aave_0904  methyl-accepting chemotaxis sensory transducer  36.53 
 
 
745 aa  381  1e-104  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.405383 
 
 
-
 
NC_011992  Dtpsy_2898  methyl-accepting chemotaxis sensory transducer  36.83 
 
 
754 aa  373  1e-102  Acidovorax ebreus TPSY  Bacteria  normal  0.0204496  n/a   
 
 
-
 
NC_008782  Ajs_3575  methyl-accepting chemotaxis sensory transducer  36.83 
 
 
754 aa  373  1e-102  Acidovorax sp. JS42  Bacteria  normal  0.946853  normal  0.162427 
 
 
-
 
NC_010002  Daci_1575  methyl-accepting chemotaxis sensory transducer  37.44 
 
 
749 aa  369  1e-100  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.114033 
 
 
-
 
NC_007908  Rfer_1374  methyl-accepting chemotaxis sensory transducer  38.86 
 
 
759 aa  366  1e-100  Rhodoferax ferrireducens T118  Bacteria  normal  0.43954  n/a   
 
 
-
 
NC_012791  Vapar_4623  methyl-accepting chemotaxis sensory transducer  39.38 
 
 
770 aa  361  2e-98  Variovorax paradoxus S110  Bacteria  normal  0.408638  n/a   
 
 
-
 
NC_007947  Mfla_1245  methyl-accepting chemotaxis sensory transducer  55.56 
 
 
543 aa  360  5e-98  Methylobacillus flagellatus KT  Bacteria  normal  0.403133  normal  0.310409 
 
 
-
 
NC_010524  Lcho_3968  methyl-accepting chemotaxis sensory transducer  37.67 
 
 
777 aa  357  3.9999999999999996e-97  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.0103685 
 
 
-
 
NC_008825  Mpe_A3187  methyl-accepting chemotaxis sensory transducer  36.03 
 
 
745 aa  343  5e-93  Methylibium petroleiphilum PM1  Bacteria  normal  0.484204  normal  0.234759 
 
 
-
 
NC_011662  Tmz1t_3691  methyl-accepting chemotaxis sensory transducer  54.95 
 
 
704 aa  317  5e-85  Thauera sp. MZ1T  Bacteria  normal  0.02239  n/a   
 
 
-
 
NC_007604  Synpcc7942_1015  methyl-accepting chemotaxis sensory transducer  38.48 
 
 
839 aa  240  8e-62  Synechococcus elongatus PCC 7942  Bacteria  normal  0.0741142  normal 
 
 
-
 
NC_011729  PCC7424_2782  methyl-accepting chemotaxis sensory transducer with GAF sensor  38.98 
 
 
902 aa  229  2e-58  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013161  Cyan8802_2778  methyl-accepting chemotaxis sensory transducer with GAF sensor  39.39 
 
 
1153 aa  223  9.999999999999999e-57  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.970502 
 
 
-
 
NC_011726  PCC8801_3339  methyl-accepting chemotaxis sensory transducer with GAF sensor  39.39 
 
 
1153 aa  223  9.999999999999999e-57  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011884  Cyan7425_3745  methyl-accepting chemotaxis sensory transducer  37.43 
 
 
852 aa  221  3e-56  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_4950  methyl-accepting chemotaxis sensory transducer  38.23 
 
 
975 aa  220  7e-56  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_0506  chemotaxis sensory transducer  37.23 
 
 
982 aa  219  1e-55  Anabaena variabilis ATCC 29413  Bacteria  normal  0.202983  normal 
 
 
-
 
NC_011884  Cyan7425_1064  methyl-accepting chemotaxis sensory transducer with GAF sensor  39.56 
 
 
879 aa  209  2e-52  Cyanothece sp. PCC 7425  Bacteria  normal  0.698769  hitchhiker  0.00000570114 
 
 
-
 
NC_011884  Cyan7425_4746  methyl-accepting chemotaxis sensory transducer  37.91 
 
 
503 aa  207  4e-52  Cyanothece sp. PCC 7425  Bacteria  normal  hitchhiker  0.000363987 
 
 
-
 
NC_013161  Cyan8802_0749  methyl-accepting chemotaxis sensory transducer  36.94 
 
 
880 aa  205  2e-51  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_0720  methyl-accepting chemotaxis sensory transducer  36.94 
 
 
880 aa  205  2e-51  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011729  PCC7424_3002  methyl-accepting chemotaxis sensory transducer  36.21 
 
 
915 aa  204  4e-51  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_007604  Synpcc7942_0858  methyl-accepting chemotaxis sensory transducer with phytochrome sensor  36.21 
 
 
1406 aa  200  6e-50  Synechococcus elongatus PCC 7942  Bacteria  normal  0.0185965  normal  0.079214 
 
 
-
 
NC_007517  Gmet_2825  methyl-accepting chemotaxis sensory transducer  36.39 
 
 
570 aa  197  5.000000000000001e-49  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.000443347 
 
 
-
 
NC_011146  Gbem_0798  methyl-accepting chemotaxis sensory transducer  39.25 
 
 
541 aa  197  5.000000000000001e-49  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_1425  methyl-accepting chemotaxis sensory transducer  39.41 
 
 
787 aa  197  6e-49  Cyanothece sp. PCC 7425  Bacteria  normal  0.68627  normal  0.569737 
 
 
-
 
NC_010814  Glov_2776  methyl-accepting chemotaxis sensory transducer  39.2 
 
 
544 aa  197  7e-49  Geobacter lovleyi SZ  Bacteria  normal  0.839191  n/a   
 
 
-
 
NC_010814  Glov_1286  methyl-accepting chemotaxis sensory transducer  39.7 
 
 
538 aa  197  8.000000000000001e-49  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_1884  methyl-accepting chemotaxis sensory transducer  36 
 
 
547 aa  196  2e-48  Geobacter bemidjiensis Bem  Bacteria  normal  0.114501  n/a   
 
 
-
 
NC_011729  PCC7424_2793  methyl-accepting chemotaxis sensory transducer  35.51 
 
 
778 aa  194  5e-48  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008609  Ppro_3147  methyl-accepting chemotaxis sensory transducer  40.51 
 
 
540 aa  192  1e-47  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0302394  n/a   
 
 
-
 
NC_012918  GM21_2326  methyl-accepting chemotaxis sensory transducer  35.61 
 
 
547 aa  193  1e-47  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008609  Ppro_3107  methyl-accepting chemotaxis sensory transducer  39.62 
 
 
542 aa  192  2e-47  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_2782  methyl-accepting chemotaxis sensory transducer  38.51 
 
 
601 aa  192  2e-47  Rhodothermus marinus DSM 4252  Bacteria  normal  0.163256  n/a   
 
 
-
 
NC_002939  GSU2942  methyl-accepting chemotaxis protein  36.36 
 
 
544 aa  190  8e-47  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_4603  methyl-accepting chemotaxis sensory transducer  33.06 
 
 
820 aa  190  8e-47  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.452141 
 
 
-
 
NC_002939  GSU0400  methyl-accepting chemotaxis protein  36.99 
 
 
549 aa  190  9e-47  Geobacter sulfurreducens PCA  Bacteria  normal  0.431065  n/a   
 
 
-
 
NC_007413  Ava_0061  chemotaxis sensory transducer  37.58 
 
 
752 aa  190  9e-47  Anabaena variabilis ATCC 29413  Bacteria  normal  0.691552  normal  0.30416 
 
 
-
 
NC_008609  Ppro_1391  methyl-accepting chemotaxis sensory transducer  37.5 
 
 
557 aa  190  9e-47  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0612  methyl-accepting chemotaxis sensory transducer  36.81 
 
 
543 aa  189  1e-46  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_4347  methyl-accepting chemotaxis sensory transducer  35.56 
 
 
854 aa  188  3e-46  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_4287  methyl-accepting chemotaxis sensory transducer  35.56 
 
 
854 aa  188  3e-46  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_002939  GSU1030  methyl-accepting chemotaxis protein  36.84 
 
 
549 aa  187  6e-46  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1033  methyl-accepting chemotaxis protein  37.65 
 
 
533 aa  187  6e-46  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2828  methyl-accepting chemotaxis sensory transducer  35.65 
 
 
550 aa  187  7e-46  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.000014913 
 
 
-
 
NC_008312  Tery_3246  methyl-accepting chemotaxis sensory transducer  37.98 
 
 
1105 aa  186  1.0000000000000001e-45  Trichodesmium erythraeum IMS101  Bacteria  normal  0.610597  normal  0.482443 
 
 
-
 
NC_012918  GM21_3719  methyl-accepting chemotaxis sensory transducer  39.23 
 
 
540 aa  185  2.0000000000000003e-45  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011884  Cyan7425_1426  methyl-accepting chemotaxis sensory transducer  33.24 
 
 
768 aa  186  2.0000000000000003e-45  Cyanothece sp. PCC 7425  Bacteria  normal  0.541717  normal  0.185322 
 
 
-
 
NC_009483  Gura_0476  methyl-accepting chemotaxis sensory transducer  35.44 
 
 
830 aa  184  4.0000000000000006e-45  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_1221  methyl-accepting chemotaxis sensory transducer  36.01 
 
 
544 aa  184  6e-45  Pelobacter propionicus DSM 2379  Bacteria  unclonable  0.000000143655  n/a   
 
 
-
 
NC_002939  GSU0401  methyl-accepting chemotaxis protein, putative  37 
 
 
539 aa  183  1e-44  Geobacter sulfurreducens PCA  Bacteria  normal  0.395676  n/a   
 
 
-
 
NC_002939  GSU1041  methyl-accepting chemotaxis protein  37.78 
 
 
541 aa  182  2e-44  Geobacter sulfurreducens PCA  Bacteria  normal  0.893443  n/a   
 
 
-
 
NC_013501  Rmar_2177  methyl-accepting chemotaxis sensory transducer  34.72 
 
 
628 aa  182  2e-44  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3045  methyl-accepting chemotaxis sensory transducer  35.07 
 
 
563 aa  181  4e-44  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.0000317109  n/a   
 
 
-
 
NC_008609  Ppro_0724  methyl-accepting chemotaxis sensory transducer  35.85 
 
 
539 aa  181  4.999999999999999e-44  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0529  methyl-accepting chemotaxis sensory transducer  38.61 
 
 
544 aa  181  4.999999999999999e-44  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_3611  methyl-accepting chemotaxis sensory transducer  38.91 
 
 
540 aa  180  5.999999999999999e-44  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3778  chemotaxis sensory transducer, phytochrome sensor  36.36 
 
 
1100 aa  180  5.999999999999999e-44  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.275371 
 
 
-
 
NC_009483  Gura_2845  methyl-accepting chemotaxis sensory transducer  35.58 
 
 
549 aa  179  1e-43  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000000597879  n/a   
 
 
-
 
NC_013501  Rmar_0343  methyl-accepting chemotaxis sensory transducer  32.87 
 
 
1079 aa  179  2e-43  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3345  methyl-accepting chemotaxis sensory transducer  35.05 
 
 
542 aa  179  2e-43  Geobacter sp. M21  Bacteria  n/a    normal  0.0226154 
 
 
-
 
NC_009483  Gura_3311  methyl-accepting chemotaxis sensory transducer  37.23 
 
 
547 aa  177  4e-43  Geobacter uraniireducens Rf4  Bacteria  normal  0.691655  n/a   
 
 
-
 
NC_009483  Gura_3063  methyl-accepting chemotaxis sensory transducer  37.69 
 
 
533 aa  177  5e-43  Geobacter uraniireducens Rf4  Bacteria  normal  0.378908  n/a   
 
 
-
 
NC_002939  GSU1029  methyl-accepting chemotaxis protein  35.47 
 
 
549 aa  177  8e-43  Geobacter sulfurreducens PCA  Bacteria  normal  0.392996  n/a   
 
 
-
 
NC_010814  Glov_0149  methyl-accepting chemotaxis sensory transducer  36.11 
 
 
533 aa  176  9e-43  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1041  methyl-accepting chemotaxis sensory transducer  37.31 
 
 
661 aa  176  9.999999999999999e-43  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
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