More than 300 homologs were found in PanDaTox collection
for query gene PP_4190 on replicon NC_002947
Organism: Pseudomonas putida KT2440



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_4190  succinate dehydrogenase iron-sulfur subunit  100 
 
 
234 aa  482  1e-135  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_1664  succinate dehydrogenase iron-sulfur subunit  100 
 
 
234 aa  482  1e-135  Pseudomonas putida F1  Bacteria  normal  0.0776343  normal 
 
 
-
 
NC_010322  PputGB1_3761  succinate dehydrogenase iron-sulfur subunit  100 
 
 
234 aa  482  1e-135  Pseudomonas putida GB-1  Bacteria  normal  0.30038  normal 
 
 
-
 
NC_010501  PputW619_3513  succinate dehydrogenase iron-sulfur subunit  99.15 
 
 
234 aa  478  1e-134  Pseudomonas putida W619  Bacteria  normal  0.327963  normal 
 
 
-
 
NC_009656  PSPA7_3690  succinate dehydrogenase iron-sulfur subunit  91.91 
 
 
235 aa  450  1.0000000000000001e-126  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_1613  succinate dehydrogenase iron-sulfur subunit  91.88 
 
 
234 aa  453  1.0000000000000001e-126  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.954242  normal  0.218372 
 
 
-
 
NC_004578  PSPTO_2198  succinate dehydrogenase, iron-sulfur protein  91.42 
 
 
234 aa  449  1e-125  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0187678  n/a   
 
 
-
 
NC_007005  Psyr_2008  succinate dehydrogenase iron-sulfur subunit  90.17 
 
 
234 aa  447  1e-125  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.816592 
 
 
-
 
NC_008463  PA14_44020  succinate dehydrogenase iron-sulfur subunit  91.49 
 
 
235 aa  449  1e-125  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_2504  succinate dehydrogenase iron-sulfur subunit  91.06 
 
 
235 aa  449  1e-125  Pseudomonas mendocina ymp  Bacteria  normal  0.254354  normal  0.293663 
 
 
-
 
NC_012560  Avin_29780  succinate dehydrogenase iron-sulfur subunit  85.84 
 
 
233 aa  429  1e-119  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007912  Sde_2107  succinate dehydrogenase iron-sulfur subunit  81.62 
 
 
234 aa  410  1e-114  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.00182295  normal 
 
 
-
 
NC_007963  Csal_1216  succinate dehydrogenase iron-sulfur subunit  78.11 
 
 
236 aa  399  9.999999999999999e-111  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_1153  succinate dehydrogenase iron-sulfur subunit  81.03 
 
 
234 aa  397  9.999999999999999e-111  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_2801  succinate dehydrogenase iron-sulfur subunit  78.88 
 
 
234 aa  393  1e-108  Marinomonas sp. MWYL1  Bacteria  normal  0.261563  normal  0.502988 
 
 
-
 
NC_009832  Spro_1266  succinate dehydrogenase iron-sulfur subunit  71.61 
 
 
238 aa  359  2e-98  Serratia proteamaculans 568  Bacteria  normal  normal  0.103659 
 
 
-
 
NC_008228  Patl_1798  succinate dehydrogenase and fumarate reductase iron-sulfur protein  72.34 
 
 
236 aa  358  5e-98  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.0325296  n/a   
 
 
-
 
NC_011138  MADE_01874  succinate dehydrogenase catalytic subunit  71.49 
 
 
236 aa  355  3.9999999999999996e-97  Alteromonas macleodii 'Deep ecotype'  Bacteria  hitchhiker  0.0000253868  n/a   
 
 
-
 
NC_008700  Sama_1426  succinate dehydrogenase iron-sulfur subunit  70.09 
 
 
235 aa  354  6.999999999999999e-97  Shewanella amazonensis SB2B  Bacteria  normal  0.0151573  normal 
 
 
-
 
NC_009831  Ssed_2815  succinate dehydrogenase iron-sulfur subunit  67.95 
 
 
235 aa  353  8.999999999999999e-97  Shewanella sediminis HAW-EB3  Bacteria  normal  0.171032  normal  0.949201 
 
 
-
 
NC_009997  Sbal195_2629  succinate dehydrogenase iron-sulfur subunit  69.23 
 
 
235 aa  353  1e-96  Shewanella baltica OS195  Bacteria  normal  0.0232881  normal  0.0552843 
 
 
-
 
NC_011663  Sbal223_1835  succinate dehydrogenase iron-sulfur subunit  69.23 
 
 
235 aa  353  1e-96  Shewanella baltica OS223  Bacteria  normal  0.0785483  normal  0.205707 
 
 
-
 
NC_007954  Sden_2184  succinate dehydrogenase iron-sulfur subunit  69.23 
 
 
235 aa  353  1e-96  Shewanella denitrificans OS217  Bacteria  normal  0.215691  n/a   
 
 
-
 
NC_007969  Pcryo_0110  succinate dehydrogenase iron-sulfur subunit  70.13 
 
 
236 aa  353  1e-96  Psychrobacter cryohalolentis K5  Bacteria  normal  0.767469  normal 
 
 
-
 
NC_009052  Sbal_2516  succinate dehydrogenase iron-sulfur subunit  69.23 
 
 
235 aa  353  1e-96  Shewanella baltica OS155  Bacteria  normal  0.0214113  n/a   
 
 
-
 
NC_009665  Shew185_2509  succinate dehydrogenase iron-sulfur subunit  69.23 
 
 
235 aa  353  1e-96  Shewanella baltica OS185  Bacteria  normal  0.0253294  n/a   
 
 
-
 
NC_009524  PsycPRwf_0264  succinate dehydrogenase iron-sulfur subunit  68.7 
 
 
236 aa  353  2e-96  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_011312  VSAL_I0845  succinate dehydrogenase iron-sulfur subunit  69.49 
 
 
237 aa  352  2e-96  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A1383  succinate dehydrogenase iron-sulfur subunit  72.1 
 
 
238 aa  352  2.9999999999999997e-96  Yersinia pestis Angola  Bacteria  normal  0.543386  normal 
 
 
-
 
NC_007204  Psyc_0101  succinate dehydrogenase iron-sulfur subunit  70.13 
 
 
236 aa  352  2.9999999999999997e-96  Psychrobacter arcticus 273-4  Bacteria  normal  normal 
 
 
-
 
NC_009708  YpsIP31758_2882  succinate dehydrogenase iron-sulfur subunit  72.1 
 
 
238 aa  352  2.9999999999999997e-96  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  0.283275  n/a   
 
 
-
 
NC_010465  YPK_2969  succinate dehydrogenase iron-sulfur subunit  72.1 
 
 
238 aa  352  2.9999999999999997e-96  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.658603  n/a   
 
 
-
 
NC_009438  Sputcn32_2270  succinate dehydrogenase iron-sulfur subunit  68.8 
 
 
235 aa  352  4e-96  Shewanella putrefaciens CN-32  Bacteria  normal  0.0879984  n/a   
 
 
-
 
NC_010506  Swoo_1836  succinate dehydrogenase iron-sulfur subunit  67.52 
 
 
235 aa  352  4e-96  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0319754  normal  0.0434672 
 
 
-
 
NC_004347  SO_1929  succinate dehydrogenase iron-sulfur subunit  69.23 
 
 
235 aa  351  5e-96  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008321  Shewmr4_1634  succinate dehydrogenase iron-sulfur subunit  68.8 
 
 
235 aa  351  5e-96  Shewanella sp. MR-4  Bacteria  normal  0.241417  normal 
 
 
-
 
NC_008577  Shewana3_1709  succinate dehydrogenase iron-sulfur subunit  68.8 
 
 
235 aa  351  5e-96  Shewanella sp. ANA-3  Bacteria  normal  0.0856361  normal  0.316977 
 
 
-
 
NC_003910  CPS_2218  succinate dehydrogenase iron-sulfur subunit  70 
 
 
235 aa  350  8.999999999999999e-96  Colwellia psychrerythraea 34H  Bacteria  normal  0.979233  n/a   
 
 
-
 
NC_008322  Shewmr7_1709  succinate dehydrogenase iron-sulfur subunit  68.8 
 
 
235 aa  350  1e-95  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_2344  succinate dehydrogenase iron-sulfur subunit  68.38 
 
 
235 aa  350  1e-95  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.0657231  n/a   
 
 
-
 
NC_009092  Shew_1654  succinate dehydrogenase iron-sulfur subunit  67.52 
 
 
235 aa  350  2e-95  Shewanella loihica PV-4  Bacteria  normal  0.224202  normal 
 
 
-
 
NC_009901  Spea_1787  succinate dehydrogenase iron-sulfur subunit  68.4 
 
 
235 aa  347  1e-94  Shewanella pealeana ATCC 700345  Bacteria  normal  0.177306  n/a   
 
 
-
 
NC_011094  SeSA_A0891  succinate dehydrogenase iron-sulfur subunit  69.49 
 
 
239 aa  346  2e-94  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A0794  succinate dehydrogenase iron-sulfur subunit  69.49 
 
 
239 aa  346  2e-94  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.554445  normal  0.074562 
 
 
-
 
NC_011083  SeHA_C0858  succinate dehydrogenase iron-sulfur subunit  69.49 
 
 
239 aa  346  2e-94  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  hitchhiker  0.0007022 
 
 
-
 
NC_012912  Dd1591_2915  succinate dehydrogenase and fumarate reductase iron-sulfur protein  69.79 
 
 
238 aa  346  2e-94  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B0768  succinate dehydrogenase iron-sulfur subunit  69.49 
 
 
239 aa  346  2e-94  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A0829  succinate dehydrogenase iron-sulfur subunit  69.49 
 
 
239 aa  346  2e-94  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
CP001637  EcDH1_2911  succinate dehydrogenase and fumarate reductase iron-sulfur protein  69.96 
 
 
238 aa  344  6e-94  Escherichia coli DH1  Bacteria  normal  0.327846  n/a   
 
 
-
 
NC_010658  SbBS512_E0643  succinate dehydrogenase iron-sulfur subunit  69.96 
 
 
238 aa  344  6e-94  Shigella boydii CDC 3083-94  Bacteria  normal  0.768959  n/a   
 
 
-
 
NC_010468  EcolC_2931  succinate dehydrogenase iron-sulfur subunit  69.96 
 
 
238 aa  344  6e-94  Escherichia coli ATCC 8739  Bacteria  normal  0.377039  normal 
 
 
-
 
NC_009801  EcE24377A_0751  succinate dehydrogenase iron-sulfur subunit  69.96 
 
 
238 aa  344  6e-94  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A0772  succinate dehydrogenase iron-sulfur subunit  69.96 
 
 
238 aa  344  6e-94  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_0737  succinate dehydrogenase iron-sulfur subunit  69.96 
 
 
238 aa  344  6e-94  Escherichia coli SMS-3-5  Bacteria  normal  0.959828  normal 
 
 
-
 
NC_011353  ECH74115_0816  succinate dehydrogenase iron-sulfur subunit  69.96 
 
 
238 aa  344  6e-94  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.715359  normal 
 
 
-
 
CP001509  ECD_00684  succinate dehydrogenase, FeS subunit  69.96 
 
 
238 aa  344  7e-94  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_00673  hypothetical protein  69.96 
 
 
238 aa  344  7e-94  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_1143  succinate dehydrogenase and fumarate reductase iron-sulfur protein  69.1 
 
 
238 aa  344  8e-94  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1674  succinate dehydrogenase iron-sulfur subunit  68.97 
 
 
236 aa  340  1e-92  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_004113  succinate dehydrogenase iron-sulfur protein  68.53 
 
 
236 aa  338  2.9999999999999998e-92  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_01354  succinate dehydrogenase iron-sulfur subunit  68.53 
 
 
238 aa  338  4e-92  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007347  Reut_A2322  succinate dehydrogenase iron-sulfur subunit  65.22 
 
 
233 aa  333  1e-90  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1235  succinate dehydrogenase iron-sulfur subunit  70.39 
 
 
238 aa  332  3e-90  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_2483  succinate dehydrogenase iron-sulfur subunit  64.78 
 
 
233 aa  332  3e-90  Cupriavidus metallidurans CH34  Bacteria  normal  0.571156  normal  0.0308742 
 
 
-
 
NC_009436  Ent638_1225  succinate dehydrogenase iron-sulfur subunit  70.82 
 
 
238 aa  332  3e-90  Enterobacter sp. 638  Bacteria  normal  normal  0.165471 
 
 
-
 
NC_003295  RSc1993  succinate dehydrogenase iron-sulfur subunit  64.35 
 
 
233 aa  332  4e-90  Ralstonia solanacearum GMI1000  Bacteria  normal  0.17727  normal  0.46163 
 
 
-
 
NC_010512  Bcenmc03_6095  succinate dehydrogenase iron-sulfur subunit  65.35 
 
 
235 aa  332  4e-90  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_1323  succinate dehydrogenase iron-sulfur subunit  65.35 
 
 
235 aa  332  4e-90  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.0573878  n/a   
 
 
-
 
NC_008544  Bcen2424_6506  succinate dehydrogenase iron-sulfur subunit  65.35 
 
 
235 aa  332  4e-90  Burkholderia cenocepacia HI2424  Bacteria  normal  0.377091  normal 
 
 
-
 
NC_013421  Pecwa_3101  succinate dehydrogenase iron-sulfur subunit  70.39 
 
 
238 aa  331  6e-90  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_2513  succinate dehydrogenase and fumarate reductase iron-sulfur protein  65.94 
 
 
235 aa  331  7.000000000000001e-90  Ralstonia pickettii 12J  Bacteria  normal  normal  0.60219 
 
 
-
 
NC_010682  Rpic_2148  succinate dehydrogenase iron-sulfur subunit  63.91 
 
 
233 aa  330  1e-89  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_1824  succinate dehydrogenase iron-sulfur subunit  63.91 
 
 
233 aa  330  1e-89  Ralstonia pickettii 12D  Bacteria  normal  0.103507  normal  0.635262 
 
 
-
 
NC_012857  Rpic12D_4492  succinate dehydrogenase iron-sulfur subunit  63.91 
 
 
233 aa  330  1e-89  Ralstonia pickettii 12D  Bacteria  normal  hitchhiker  0.00137557 
 
 
-
 
NC_010678  Rpic_4359  succinate dehydrogenase iron-sulfur subunit  63.91 
 
 
233 aa  330  1e-89  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_006368  lpp0596  succinate dehydrogenase iron-sulfur subunit  65.67 
 
 
240 aa  328  4e-89  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl0577  succinate dehydrogenase iron-sulfur subunit  65.24 
 
 
240 aa  326  1.0000000000000001e-88  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_010087  Bmul_5837  succinate dehydrogenase iron-sulfur subunit  64.35 
 
 
233 aa  326  2.0000000000000001e-88  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_5589  succinate dehydrogenase iron-sulfur subunit  63.88 
 
 
234 aa  326  2.0000000000000001e-88  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_4364  succinate dehydrogenase iron-sulfur subunit  63.88 
 
 
234 aa  326  2.0000000000000001e-88  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_4645  succinate dehydrogenase iron-sulfur subunit  64.35 
 
 
233 aa  326  2.0000000000000001e-88  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0902165  normal 
 
 
-
 
NC_007298  Daro_2862  succinate dehydrogenase iron-sulfur subunit  62.82 
 
 
236 aa  325  3e-88  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B2149  succinate dehydrogenase iron-sulfur subunit  64.35 
 
 
233 aa  325  3e-88  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_4430  succinate dehydrogenase iron-sulfur subunit  64.35 
 
 
233 aa  325  3e-88  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_3591  succinate dehydrogenase iron-sulfur subunit  64.35 
 
 
233 aa  325  3e-88  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.130742  normal 
 
 
-
 
NC_008391  Bamb_3314  succinate dehydrogenase iron-sulfur subunit  64.35 
 
 
233 aa  325  3e-88  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.964929 
 
 
-
 
NC_008543  Bcen2424_3937  succinate dehydrogenase iron-sulfur subunit  64.35 
 
 
233 aa  325  3e-88  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_3830  succinate dehydrogenase iron-sulfur subunit  63.91 
 
 
233 aa  325  5e-88  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.577483 
 
 
-
 
NC_008709  Ping_2253  succinate dehydrogenase catalytic subunit  70.69 
 
 
237 aa  324  9e-88  Psychromonas ingrahamii 37  Bacteria  normal  0.718779  normal  0.708681 
 
 
-
 
NC_007908  Rfer_1798  succinate dehydrogenase and fumarate reductase iron-sulfur protein  61.74 
 
 
234 aa  322  2e-87  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010087  Bmul_5498  succinate dehydrogenase iron-sulfur subunit  61.9 
 
 
236 aa  323  2e-87  Burkholderia multivorans ATCC 17616  Bacteria  normal  hitchhiker  0.00692579 
 
 
-
 
NC_007948  Bpro_3603  succinate dehydrogenase subunit B  63.72 
 
 
234 aa  322  3e-87  Polaromonas sp. JS666  Bacteria  normal  0.86891  normal  0.185486 
 
 
-
 
NC_009379  Pnuc_0761  succinate dehydrogenase and fumarate reductase iron-sulfur protein  63.04 
 
 
234 aa  322  3e-87  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_3035  succinate dehydrogenase and fumarate reductase iron-sulfur protein  63.72 
 
 
234 aa  321  6e-87  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_012791  Vapar_1427  succinate dehydrogenase and fumarate reductase iron-sulfur protein  62.45 
 
 
233 aa  321  8e-87  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2331  succinate dehydrogenase iron-sulfur subunit  63.04 
 
 
233 aa  320  1.9999999999999998e-86  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA1746  succinate dehydrogenase iron-sulfur subunit  63.04 
 
 
233 aa  320  1.9999999999999998e-86  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0790  succinate dehydrogenase iron-sulfur subunit  63.04 
 
 
233 aa  320  1.9999999999999998e-86  Burkholderia pseudomallei 1710b  Bacteria  normal  0.0832878  n/a   
 
 
-
 
NC_010524  Lcho_2703  succinate dehydrogenase and fumarate reductase iron-sulfur protein  63.91 
 
 
234 aa  320  1.9999999999999998e-86  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00554103 
 
 
-
 
NC_008784  BMASAVP1_1624  succinate dehydrogenase iron-sulfur subunit  63.04 
 
 
233 aa  320  1.9999999999999998e-86  Burkholderia mallei SAVP1  Bacteria  normal  0.18898  n/a   
 
 
-
 
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