14 homologs were found in PanDaTox collection
for query gene PP_1692 on replicon NC_002947
Organism: Pseudomonas putida KT2440



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002947  PP_1692  Sel1 domain protein repeat-containing protein  100 
 
 
141 aa  283  5e-76  Pseudomonas putida KT2440  Bacteria  hitchhiker  0.000440954  normal  0.56597 
 
 
-
 
NC_009512  Pput_4027  Sel1 domain-containing protein  99.28 
 
 
139 aa  277  3e-74  Pseudomonas putida F1  Bacteria  hitchhiker  0.0000000000522378  normal 
 
 
-
 
NC_010322  PputGB1_1290  Sel1 domain-containing protein  97.08 
 
 
139 aa  243  4.9999999999999997e-64  Pseudomonas putida GB-1  Bacteria  hitchhiker  0.0000000000000341988  normal  0.607736 
 
 
-
 
NC_010501  PputW619_1248  hypothetical protein  90 
 
 
96 aa  165  2e-40  Pseudomonas putida W619  Bacteria  hitchhiker  0.00000895679  normal  0.131526 
 
 
-
 
NC_007492  Pfl01_1658  hypothetical protein  70.48 
 
 
107 aa  141  3e-33  Pseudomonas fluorescens Pf0-1  Bacteria  unclonable  0.00000000000000957137  decreased coverage  0.00112349 
 
 
-
 
NC_009439  Pmen_3333  Sel1 domain-containing protein  72.63 
 
 
103 aa  133  9.999999999999999e-31  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.00000000200888  normal 
 
 
-
 
NC_012560  Avin_35250  hypothetical protein  65.45 
 
 
117 aa  128  3e-29  Azotobacter vinelandii DJ  Bacteria  hitchhiker  0.0000000141879  n/a   
 
 
-
 
NC_009483  Gura_0781  Sel1 domain-containing protein  34.69 
 
 
393 aa  44.7  0.0004  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.0000000364549  n/a   
 
 
-
 
NC_009667  Oant_1207  Sel1 domain-containing protein  29.13 
 
 
350 aa  44.7  0.0004  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.838617  n/a   
 
 
-
 
NC_010830  Aasi_0764  hypothetical protein  31.4 
 
 
850 aa  42  0.003  Candidatus Amoebophilus asiaticus 5a2  Bacteria  n/a    normal 
 
 
-
 
NC_010830  Aasi_0432  hypothetical protein  32.29 
 
 
1002 aa  40.8  0.006  Candidatus Amoebophilus asiaticus 5a2  Bacteria  n/a    normal  0.0267452 
 
 
-
 
NC_011146  Gbem_1107  Sel1 domain protein repeat-containing protein  35 
 
 
270 aa  40.8  0.006  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.00367364  n/a   
 
 
-
 
NC_002939  GSU2894  hypothetical protein  31.19 
 
 
245 aa  40  0.01  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011126  HY04AAS1_1126  Sel1 domain protein repeat-containing protein  31.33 
 
 
343 aa  40  0.01  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  n/a   
 
 
-
 
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