58 homologs were found in PanDaTox collection
for query gene PC1_4122 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012917  PC1_4122  putative transcriptional regulator, Nlp  100 
 
 
85 aa  171  2.9999999999999996e-42  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  hitchhiker  0.00284787  n/a   
 
 
-
 
NC_012912  Dd1591_3706  putative transcriptional regulator, Nlp  71.95 
 
 
88 aa  126  1.0000000000000001e-28  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3547  putative transcriptional regulator, Nlp  71.95 
 
 
88 aa  126  1.0000000000000001e-28  Dickeya dadantii Ech703  Bacteria  normal  0.687539  n/a   
 
 
-
 
NC_010465  YPK_3760  putative transcriptional regulator, Nlp  71.6 
 
 
91 aa  122  1e-27  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.0154648  n/a   
 
 
-
 
NC_009708  YpsIP31758_3615  sugar fermentation stimulation protein B  71.6 
 
 
91 aa  122  1e-27  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.00380943  n/a   
 
 
-
 
NC_012917  PC1_0554  putative transcriptional regulator, Nlp  69.88 
 
 
87 aa  122  2e-27  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  unclonable  0.0000290872  n/a   
 
 
-
 
NC_013421  Pecwa_0789  putative transcriptional regulator, Nlp  68.67 
 
 
87 aa  120  6e-27  Pectobacterium wasabiae WPP163  Bacteria  unclonable  0.00000116057  n/a   
 
 
-
 
NC_012880  Dd703_3364  putative transcriptional regulator, Nlp  72.84 
 
 
87 aa  120  7e-27  Dickeya dadantii Ech703  Bacteria  hitchhiker  0.00000262208  n/a   
 
 
-
 
NC_009832  Spro_0470  putative transcriptional regulator, Nlp  70.37 
 
 
86 aa  118  3e-26  Serratia proteamaculans 568  Bacteria  hitchhiker  0.00000220892  normal 
 
 
-
 
NC_012912  Dd1591_0415  putative transcriptional regulator, Nlp  67.07 
 
 
95 aa  117  7e-26  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_1604  putative transcriptional regulator, Nlp  69.23 
 
 
84 aa  116  7.999999999999999e-26  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_0412  putative transcriptional regulator, Nlp  69.23 
 
 
84 aa  116  9.999999999999999e-26  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3204  putative transcriptional regulator, Nlp  67.9 
 
 
90 aa  113  6.9999999999999995e-25  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_3282  putative transcriptional regulator, Nlp  64.63 
 
 
95 aa  112  2.0000000000000002e-24  Dickeya zeae Ech1591  Bacteria  normal  0.369653  n/a   
 
 
-
 
NC_013421  Pecwa_1605  putative transcriptional regulator, Nlp  64.56 
 
 
92 aa  110  4.0000000000000004e-24  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1511  putative transcriptional regulator, Nlp  58.23 
 
 
90 aa  107  4.0000000000000004e-23  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C2923  regulator for maltose metabolism  65.33 
 
 
94 aa  107  5e-23  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.585946  hitchhiker  0.000573854 
 
 
-
 
NC_013421  Pecwa_1690  putative transcriptional regulator, Nlp  58.02 
 
 
126 aa  106  1e-22  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_1499  putative transcriptional regulator, Nlp  62.82 
 
 
95 aa  105  2e-22  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0869  putative transcriptional regulator, Nlp  69.57 
 
 
73 aa  99.4  2e-20  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.775938  n/a   
 
 
-
 
NC_013421  Pecwa_0716  putative transcriptional regulator, Nlp  66.67 
 
 
73 aa  97.1  8e-20  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A1882  sugar fermentation stimulation protein B  64.79 
 
 
81 aa  96.3  1e-19  Yersinia pestis Angola  Bacteria  normal  0.112959  hitchhiker  0.000217227 
 
 
-
 
NC_010465  YPK_3055  putative transcriptional regulator, Nlp  64.79 
 
 
81 aa  96.3  1e-19  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_2981  sugar fermentation stimulation protein B  64.79 
 
 
81 aa  96.3  1e-19  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A3567  DNA-binding transcriptional regulator Nlp  62.5 
 
 
95 aa  95.9  2e-19  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  hitchhiker  0.000426045  normal 
 
 
-
 
NC_011083  SeHA_C3603  DNA-binding transcriptional regulator Nlp  62.5 
 
 
95 aa  95.9  2e-19  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.481133  normal  0.371215 
 
 
-
 
NC_011094  SeSA_A3498  DNA-binding transcriptional regulator Nlp  62.5 
 
 
95 aa  95.9  2e-19  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.0588658  normal 
 
 
-
 
NC_011149  SeAg_B3496  DNA-binding transcriptional regulator Nlp  62.5 
 
 
95 aa  95.9  2e-19  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  hitchhiker  0.00000769249  n/a   
 
 
-
 
NC_011205  SeD_A3665  DNA-binding transcriptional regulator Nlp  62.5 
 
 
95 aa  95.9  2e-19  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  hitchhiker  0.000392982  normal  0.0663966 
 
 
-
 
NC_012892  B21_03004  hypothetical protein  62.03 
 
 
92 aa  95.1  3e-19  Escherichia coli BL21  Bacteria  normal  0.0319542  n/a   
 
 
-
 
CP001637  EcDH1_0519  putative transcriptional regulator, Nlp  62.03 
 
 
92 aa  95.1  3e-19  Escherichia coli DH1  Bacteria  hitchhiker  0.0000202427  n/a   
 
 
-
 
NC_011353  ECH74115_4510  DNA-binding transcriptional regulator Nlp  62.03 
 
 
92 aa  95.1  3e-19  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.000173823  normal  0.989059 
 
 
-
 
CP001509  ECD_03053  DNA-binding transcriptional activator of maltose metabolism  62.03 
 
 
92 aa  95.1  3e-19  Escherichia coli BL21(DE3)  Bacteria  normal  0.044476  n/a   
 
 
-
 
NC_009436  Ent638_3624  DNA-binding transcriptional regulator Nlp  60.98 
 
 
95 aa  94.7  3e-19  Enterobacter sp. 638  Bacteria  hitchhiker  0.0000112676  normal  0.241472 
 
 
-
 
NC_010498  EcSMS35_3484  DNA-binding transcriptional regulator Nlp  62.03 
 
 
92 aa  95.1  3e-19  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.00516698  normal 
 
 
-
 
NC_010468  EcolC_0512  DNA-binding transcriptional regulator Nlp  62.03 
 
 
92 aa  95.1  3e-19  Escherichia coli ATCC 8739  Bacteria  hitchhiker  0.00792523  normal  0.0634944 
 
 
-
 
NC_009801  EcE24377A_3674  DNA-binding transcriptional regulator Nlp  62.03 
 
 
92 aa  95.1  3e-19  Escherichia coli E24377A  Bacteria  hitchhiker  0.00000245741  n/a   
 
 
-
 
NC_009800  EcHS_A3381  DNA-binding transcriptional regulator Nlp  62.03 
 
 
92 aa  95.1  3e-19  Escherichia coli HS  Bacteria  hitchhiker  0.00000000000107042  n/a   
 
 
-
 
NC_010658  SbBS512_E3582  DNA-binding transcriptional regulator Nlp  60.76 
 
 
92 aa  93.6  8e-19  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.000000128887  n/a   
 
 
-
 
NC_012912  Dd1591_1156  putative transcriptional regulator, Nlp  62.69 
 
 
81 aa  90.1  9e-18  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_2998  putative transcriptional regulator, Nlp  68.25 
 
 
71 aa  90.1  9e-18  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3226  putative transcriptional regulator, Nlp  60.87 
 
 
81 aa  86.3  1e-16  Dickeya dadantii Ech703  Bacteria  normal  0.78632  n/a   
 
 
-
 
NC_012912  Dd1591_0904  putative transcriptional regulator, Nlp  66.67 
 
 
82 aa  86.7  1e-16  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_011080  SNSL254_A2563  maltose metabolism regulator  52.94 
 
 
82 aa  84.7  4e-16  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C2616  regulator for maltose metabolism  52.94 
 
 
82 aa  84.3  5e-16  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  hitchhiker  0.00105076 
 
 
-
 
NC_010465  YPK_0217  putative transcriptional regulator, Nlp  55.56 
 
 
81 aa  81.6  0.000000000000003  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.228341  n/a   
 
 
-
 
NC_011901  Tgr7_1668  putative transcriptional regulator, Nlp  52.05 
 
 
97 aa  72  0.000000000003  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A0788  hypothetical protein  48.48 
 
 
74 aa  68.9  0.00000000002  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000117645  n/a   
 
 
-
 
NC_009457  VC0395_A0649  hypothetical protein  48.48 
 
 
74 aa  68.9  0.00000000002  Vibrio cholerae O395  Bacteria  normal  0.179596  n/a   
 
 
-
 
NC_004347  SO_2653  Ner family transcriptional regulator  50 
 
 
74 aa  68.6  0.00000000003  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007948  Bpro_0997  putative transcriptional regulator, Nlp  45.59 
 
 
125 aa  63.2  0.000000001  Polaromonas sp. JS666  Bacteria  normal  0.945966  hitchhiker  0.000234397 
 
 
-
 
NC_011901  Tgr7_2480  putative transcriptional regulator, Nlp  53.12 
 
 
98 aa  63.2  0.000000001  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3702  putative transcriptional regulator, Nlp  41.46 
 
 
103 aa  61.2  0.000000004  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_013421  Pecwa_2698  putative transcriptional regulator, Nlp  59.09 
 
 
53 aa  59.3  0.00000002  Pectobacterium wasabiae WPP163  Bacteria  normal  0.897139  n/a   
 
 
-
 
NC_008752  Aave_4116  putative transcriptional regulator, Nlp  48.44 
 
 
90 aa  58.5  0.00000003  Acidovorax citrulli AAC00-1  Bacteria  normal  hitchhiker  0.00000147117 
 
 
-
 
NC_011004  Rpal_0642  putative transcriptional regulator, Nlp  36.23 
 
 
99 aa  53.9  0.0000008  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_4530  putative transcriptional regulator, Nlp  35.71 
 
 
112 aa  53.5  0.000001  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.974254 
 
 
-
 
NC_009140  SNSL254_pSN254_0191  hypothetical protein  44.68 
 
 
90 aa  43.5  0.0009  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  hitchhiker  0.0000000930698 
 
 
-
 
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