More than 300 homologs were found in PanDaTox collection
for query gene PC1_3875 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012917  PC1_3875  extracellular solute-binding protein family 3  100 
 
 
289 aa  595  1e-169  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.575894  n/a   
 
 
-
 
NC_013421  Pecwa_4052  extracellular solute-binding protein family 3  93.77 
 
 
289 aa  560  1.0000000000000001e-159  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009668  Oant_3522  extracellular solute-binding protein  56.34 
 
 
283 aa  322  4e-87  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0160113  n/a   
 
 
-
 
NC_010511  M446_4485  extracellular solute-binding protein  50.94 
 
 
304 aa  264  1e-69  Methylobacterium sp. 4-46  Bacteria  normal  0.218316  normal  0.0251052 
 
 
-
 
NC_011894  Mnod_5166  extracellular solute-binding protein family 3  50.39 
 
 
294 aa  259  4e-68  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2652  extracellular solute-binding protein family 3  43.45 
 
 
285 aa  228  6e-59  Dickeya dadantii Ech703  Bacteria  normal  0.0252479  n/a   
 
 
-
 
NC_012912  Dd1591_1256  extracellular solute-binding protein family 3  43.45 
 
 
285 aa  225  7e-58  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_011981  Avi_7239  ABC transporter substrate binding protein (nopaline)  46.95 
 
 
283 aa  225  8e-58  Agrobacterium vitis S4  Bacteria  normal  0.79326  n/a   
 
 
-
 
NC_007952  Bxe_B1829  ABC amino acid transporter, periplasmic ligand binding protein  40.48 
 
 
288 aa  209  4e-53  Burkholderia xenovorans LB400  Bacteria  normal  0.546299  normal  0.360728 
 
 
-
 
NC_011366  Rleg2_5922  extracellular solute-binding protein family 3  42.47 
 
 
280 aa  207  2e-52  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.711566  normal  0.173264 
 
 
-
 
NC_010676  Bphyt_4834  extracellular solute-binding protein family 3  42.15 
 
 
286 aa  204  2e-51  Burkholderia phytofirmans PsJN  Bacteria  normal  0.951737  normal  0.158005 
 
 
-
 
NC_012858  Rleg_6915  extracellular solute-binding protein family 3  41.7 
 
 
280 aa  202  4e-51  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_008544  Bcen2424_6115  extracellular solute-binding protein  39.85 
 
 
369 aa  201  9.999999999999999e-51  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.602476 
 
 
-
 
NC_010512  Bcenmc03_6597  extracellular solute-binding protein  39.85 
 
 
286 aa  201  9.999999999999999e-51  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.21909 
 
 
-
 
NC_008392  Bamb_5840  extracellular solute-binding protein  39.85 
 
 
383 aa  201  9.999999999999999e-51  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_008062  Bcen_5751  extracellular solute-binding protein  39.85 
 
 
296 aa  201  1.9999999999999998e-50  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010557  BamMC406_5623  extracellular solute-binding protein  39.46 
 
 
286 aa  200  3e-50  Burkholderia ambifaria MC40-6  Bacteria  normal  0.120553  normal  0.52898 
 
 
-
 
NC_010623  Bphy_5100  extracellular solute-binding protein  39.77 
 
 
289 aa  196  3e-49  Burkholderia phymatum STM815  Bacteria  normal  0.0295022  decreased coverage  0.00240656 
 
 
-
 
NC_011312  VSAL_I1958  arginine/ornithine periplasmic binding protein-dependent transporter  31.41 
 
 
258 aa  145  8.000000000000001e-34  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.488249  n/a   
 
 
-
 
NC_009668  Oant_3711  extracellular solute-binding protein  31.41 
 
 
253 aa  143  4e-33  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_4286  extracellular solute-binding protein  33.92 
 
 
259 aa  142  8e-33  Burkholderia ambifaria AMMD  Bacteria  normal  0.0413144  normal 
 
 
-
 
NC_004310  BR0955  amino acid ABC transporter, periplasmic amino acid-binding protein  32.86 
 
 
268 aa  142  9e-33  Brucella suis 1330  Bacteria  normal  0.0776363  n/a   
 
 
-
 
NC_004311  BRA0631  amino acid ABC transporter, periplasmic amino acid-binding protein  31.77 
 
 
253 aa  141  9.999999999999999e-33  Brucella suis 1330  Bacteria  decreased coverage  0.00542513  n/a   
 
 
-
 
NC_010512  Bcenmc03_6800  extracellular solute-binding protein  33.22 
 
 
259 aa  141  9.999999999999999e-33  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.8606  normal 
 
 
-
 
NC_009504  BOV_A0593  amino acid ABC transporter, periplasmic amino acid-binding protein  31.77 
 
 
253 aa  141  9.999999999999999e-33  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_012792  Vapar_5842  extracellular solute-binding protein family 3  33.2 
 
 
261 aa  140  1.9999999999999998e-32  Variovorax paradoxus S110  Bacteria  normal  0.742895  n/a   
 
 
-
 
NC_009667  Oant_2235  extracellular solute-binding protein  34.19 
 
 
268 aa  140  1.9999999999999998e-32  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_4841  extracellular solute-binding protein  33.57 
 
 
259 aa  139  3.9999999999999997e-32  Burkholderia ambifaria MC40-6  Bacteria  normal  0.608491  normal  0.182351 
 
 
-
 
NC_008709  Ping_2833  ABC amino acid transporter extracellular solute-binding protein, family 3  32.48 
 
 
258 aa  139  3.9999999999999997e-32  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_004311  BRA0632  amino acid ABC transporter, periplasmic amino acid-binding protein  30.6 
 
 
257 aa  137  2e-31  Brucella suis 1330  Bacteria  normal  0.0329945  n/a   
 
 
-
 
NC_009668  Oant_3710  extracellular solute-binding protein  32.49 
 
 
253 aa  137  2e-31  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.33118  n/a   
 
 
-
 
NC_009504  BOV_A0594  amino acid ABC transporter, periplasmic amino acid-binding protein  30.6 
 
 
257 aa  136  4e-31  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_2214  extracellular solute-binding protein  30.74 
 
 
268 aa  135  7.000000000000001e-31  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A1454  amino acid ABC transporter, periplasmic amino acid-binding protein  32.49 
 
 
260 aa  135  8e-31  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000138881  n/a   
 
 
-
 
NC_011666  Msil_1067  extracellular solute-binding protein family 3  35.46 
 
 
294 aa  134  9.999999999999999e-31  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0464798 
 
 
-
 
NC_009524  PsycPRwf_2076  extracellular solute-binding protein  36.74 
 
 
264 aa  134  9.999999999999999e-31  Psychrobacter sp. PRwf-1  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_2561  extracellular solute-binding protein family 3  31.2 
 
 
263 aa  134  1.9999999999999998e-30  Thauera sp. MZ1T  Bacteria  normal  0.52541  n/a   
 
 
-
 
NC_010622  Bphy_2163  cationic amino acid ABC transporter, periplasmic binding protein  32.98 
 
 
258 aa  133  3e-30  Burkholderia phymatum STM815  Bacteria  normal  0.0442479  decreased coverage  0.0000000159985 
 
 
-
 
NC_010501  PputW619_2808  extracellular solute-binding protein  33.33 
 
 
250 aa  133  3.9999999999999996e-30  Pseudomonas putida W619  Bacteria  normal  0.857979  normal  0.951072 
 
 
-
 
NC_007969  Pcryo_0327  extracellular solute-binding protein  32.84 
 
 
305 aa  133  3.9999999999999996e-30  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_1562  extracellular solute-binding protein  30.83 
 
 
261 aa  132  6e-30  Chelativorans sp. BNC1  Bacteria  normal  0.470134  n/a   
 
 
-
 
NC_009505  BOV_0854  amino acid ABC transporter, periplasmic amino acid-binding protein  32.54 
 
 
282 aa  131  1.0000000000000001e-29  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003972  amino acid ABC transporter amino acid-binding protein  32.71 
 
 
256 aa  131  1.0000000000000001e-29  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_1588  extracellular solute-binding protein  32.81 
 
 
260 aa  131  2.0000000000000002e-29  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_009667  Oant_2456  extracellular solute-binding protein  32.13 
 
 
265 aa  130  4.0000000000000003e-29  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.68791  n/a   
 
 
-
 
NC_008825  Mpe_A2879  putative amino acid binding protein  32.31 
 
 
263 aa  129  7.000000000000001e-29  Methylibium petroleiphilum PM1  Bacteria  normal  0.336803  normal 
 
 
-
 
NC_011989  Avi_2066  ABC transporter substrate binding protein (amino acid)  34.4 
 
 
258 aa  128  9.000000000000001e-29  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_4912  extracellular solute-binding protein  32.25 
 
 
254 aa  128  1.0000000000000001e-28  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_4274  extracellular solute-binding protein  31.62 
 
 
258 aa  128  1.0000000000000001e-28  Sinorhizobium medicae WSM419  Bacteria  normal  0.0882363  normal 
 
 
-
 
NC_007969  Pcryo_0325  extracellular solute-binding protein  32.63 
 
 
266 aa  128  1.0000000000000001e-28  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_007204  Psyc_0295  ABC basic amino acid transporter, periplasmic binding protein  32.63 
 
 
266 aa  127  2.0000000000000002e-28  Psychrobacter arcticus 273-4  Bacteria  normal  0.874401  normal 
 
 
-
 
NC_009783  VIBHAR_01550  hypothetical protein  31.58 
 
 
258 aa  127  2.0000000000000002e-28  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009439  Pmen_4270  extracellular solute-binding protein  31.5 
 
 
250 aa  127  3e-28  Pseudomonas mendocina ymp  Bacteria  normal  0.861992  hitchhiker  0.00000000000000985175 
 
 
-
 
NC_004578  PSPTO_5358  amino acid ABC transporter, periplasmic amino acid-binding protein  32.61 
 
 
254 aa  126  4.0000000000000003e-28  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_2323  extracellular solute-binding protein  31.64 
 
 
250 aa  126  4.0000000000000003e-28  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_4365  extracellular solute-binding protein  29.68 
 
 
264 aa  126  4.0000000000000003e-28  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_5565  cationic amino acid ABC transporter, periplasmic binding protein  33.21 
 
 
260 aa  126  4.0000000000000003e-28  Burkholderia ambifaria AMMD  Bacteria  normal  0.857563  normal 
 
 
-
 
NC_009654  Mmwyl1_1113  extracellular solute-binding protein  30.52 
 
 
252 aa  126  5e-28  Marinomonas sp. MWYL1  Bacteria  normal  0.264301  normal 
 
 
-
 
NC_011981  Avi_7508  ABC transporter substrate binding protein (amino acid)  31.1 
 
 
272 aa  126  5e-28  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_4902  cationic amino acid ABC transporter, periplasmic binding protein  33.21 
 
 
260 aa  126  5e-28  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.463911  decreased coverage  0.0000475761 
 
 
-
 
NC_002947  PP_3593  amino acid ABC transporter, periplasmic amino acid-binding protein  31.76 
 
 
250 aa  125  6e-28  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_3739  cationic amino acid ABC transporter, periplasmic binding protein  33.21 
 
 
260 aa  125  6e-28  Burkholderia ambifaria MC40-6  Bacteria  normal  0.40213  normal  0.421075 
 
 
-
 
NC_010681  Bphyt_2071  extracellular solute-binding protein family 3  32.75 
 
 
262 aa  125  6e-28  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.012684 
 
 
-
 
NC_007493  RSP_0372  ABC basic amino acid transporter, solute-binding protein  33.73 
 
 
241 aa  125  7e-28  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2016  extracellular solute-binding protein  33.73 
 
 
241 aa  125  7e-28  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.504663  normal 
 
 
-
 
NC_010515  Bcenmc03_3685  cationic amino acid ABC transporter, periplasmic binding protein  32.12 
 
 
260 aa  125  9e-28  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.304708  normal  0.133024 
 
 
-
 
NC_009512  Pput_2179  extracellular solute-binding protein  31.37 
 
 
250 aa  125  9e-28  Pseudomonas putida F1  Bacteria  normal  0.158318  normal 
 
 
-
 
NC_008543  Bcen2424_3842  cationic amino acid ABC transporter, periplasmic binding protein  32.12 
 
 
260 aa  125  9e-28  Burkholderia cenocepacia HI2424  Bacteria  normal  0.36505  normal 
 
 
-
 
NC_008061  Bcen_4522  lysine-arginine-ornithine-binding periplasmic protein  32.12 
 
 
260 aa  125  9e-28  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C2596  lysine-arginine-ornithine-binding periplasmic protein  34.62 
 
 
260 aa  125  1e-27  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B2496  lysine-arginine-ornithine-binding periplasmic protein  34.62 
 
 
260 aa  125  1e-27  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_2222  extracellular solute-binding protein  35.16 
 
 
242 aa  124  1e-27  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A2584  lysine-arginine-ornithine-binding periplasmic protein  34.62 
 
 
260 aa  125  1e-27  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.176074 
 
 
-
 
NC_007969  Pcryo_0326  extracellular solute-binding protein  33.59 
 
 
310 aa  125  1e-27  Psychrobacter cryohalolentis K5  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A2542  lysine-arginine-ornithine-binding periplasmic protein  34.62 
 
 
260 aa  125  1e-27  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.579681  normal 
 
 
-
 
NC_011205  SeD_A2705  lysine-arginine-ornithine-binding periplasmic protein  34.62 
 
 
260 aa  124  2e-27  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.588251  normal 
 
 
-
 
NC_007204  Psyc_0296  ABC basic amino acid transporter, periplasmic binding protein  34.1 
 
 
309 aa  124  2e-27  Psychrobacter arcticus 273-4  Bacteria  normal  0.511931  normal 
 
 
-
 
NC_007802  Jann_1132  extracellular solute-binding protein  33.07 
 
 
240 aa  124  2e-27  Jannaschia sp. CCS1  Bacteria  normal  normal  0.768182 
 
 
-
 
NC_012912  Dd1591_1449  extracellular solute-binding protein family 3  35.91 
 
 
258 aa  123  3e-27  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_1712  extracellular solute-binding protein  31.05 
 
 
235 aa  123  3e-27  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_0335  extracellular solute-binding protein  28.46 
 
 
245 aa  123  3e-27  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_5891  putative periplasmic binding protein  31.75 
 
 
250 aa  123  4e-27  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_68070  putative periplasmic binding protein  31.75 
 
 
250 aa  123  4e-27  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.467705  normal  0.0215943 
 
 
-
 
NC_009832  Spro_2397  extracellular solute-binding protein  27.62 
 
 
257 aa  122  6e-27  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_52790  arginine/ornithine binding protein AotJ  32.31 
 
 
259 aa  122  8e-27  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_006348  BMA0598  amino acid ABC transporter, periplasmic amino acid-binding protein  33.85 
 
 
264 aa  121  9.999999999999999e-27  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2873  amino acid ABC transporter, periplasmic amino acid-binding protein  33.85 
 
 
264 aa  121  9.999999999999999e-27  Burkholderia mallei NCTC 10229  Bacteria  normal  0.223269  n/a   
 
 
-
 
NC_007434  BURPS1710b_2839  amino acid ABC transporter, periplasmic amino acid-binding protein  33.85 
 
 
264 aa  121  9.999999999999999e-27  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_1928  extracellular solute-binding protein  30.35 
 
 
265 aa  121  9.999999999999999e-27  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.402085 
 
 
-
 
NC_007510  Bcep18194_A3300  ABC amino acid transporter, periplasmic ligand binding protein  33.21 
 
 
262 aa  122  9.999999999999999e-27  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_009076  BURPS1106A_2777  lysine-arginine-ornithine-binding periplasmic protein  33.85 
 
 
264 aa  121  9.999999999999999e-27  Burkholderia pseudomallei 1106a  Bacteria  normal  0.262545  n/a   
 
 
-
 
NC_009512  Pput_0300  extracellular solute-binding protein  30.43 
 
 
250 aa  121  9.999999999999999e-27  Pseudomonas putida F1  Bacteria  normal  0.639045  normal  0.100336 
 
 
-
 
NC_009428  Rsph17025_0869  extracellular solute-binding protein  33.2 
 
 
241 aa  121  9.999999999999999e-27  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_008785  BMASAVP1_A2417  amino acid ABC transporter, periplasmic amino acid-binding protein  33.85 
 
 
264 aa  121  9.999999999999999e-27  Burkholderia mallei SAVP1  Bacteria  normal  0.131702  n/a   
 
 
-
 
NC_009080  BMA10247_1729  amino acid ABC transporter, periplasmic amino acid-binding protein  33.85 
 
 
264 aa  121  9.999999999999999e-27  Burkholderia mallei NCTC 10247  Bacteria  normal  0.133589  n/a   
 
 
-
 
NC_007651  BTH_I1783  amino acid ABC transporter, periplasmic amino acid-binding protein  33.85 
 
 
264 aa  121  9.999999999999999e-27  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_0305  extracellular solute-binding protein  32.25 
 
 
250 aa  121  9.999999999999999e-27  Pseudomonas putida GB-1  Bacteria  hitchhiker  0.000409143  normal  0.868034 
 
 
-
 
NC_008060  Bcen_2935  extracellular solute-binding protein  33.81 
 
 
262 aa  121  9.999999999999999e-27  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_0119  extracellular solute-binding protein  34.06 
 
 
262 aa  121  9.999999999999999e-27  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.876224  normal 
 
 
-
 
NC_008542  Bcen2424_0120  extracellular solute-binding protein  33.81 
 
 
262 aa  121  9.999999999999999e-27  Burkholderia cenocepacia HI2424  Bacteria  normal  0.107971  n/a   
 
 
-
 
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