More than 300 homologs were found in PanDaTox collection
for query gene PC1_3447 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013421  Pecwa_3604  methyl-accepting chemotaxis sensory transducer  92.93 
 
 
523 aa  904    Pectobacterium wasabiae WPP163  Bacteria  normal  0.0287623  n/a   
 
 
-
 
NC_012917  PC1_3447  methyl-accepting chemotaxis sensory transducer  100 
 
 
523 aa  1048    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_0786  methyl-accepting chemotaxis sensory transducer  69.36 
 
 
529 aa  656    Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_0765  methyl-accepting chemotaxis sensory transducer  72.06 
 
 
528 aa  708    Dickeya zeae Ech1591  Bacteria  normal  0.711695  n/a   
 
 
-
 
NC_009436  Ent638_0416  methyl-accepting chemotaxis sensory transducer  54.65 
 
 
522 aa  522  1e-147  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_0826  methyl-accepting chemotaxis sensory transducer  50.68 
 
 
529 aa  473  1e-132  Dickeya dadantii Ech703  Bacteria  normal  0.227259  n/a   
 
 
-
 
NC_009832  Spro_0463  methyl-accepting chemotaxis sensory transducer  51.55 
 
 
517 aa  467  9.999999999999999e-131  Serratia proteamaculans 568  Bacteria  hitchhiker  0.000944533  normal  0.933191 
 
 
-
 
NC_013421  Pecwa_3571  methyl-accepting chemotaxis sensory transducer  49.9 
 
 
528 aa  463  1e-129  Pectobacterium wasabiae WPP163  Bacteria  normal  0.595797  n/a   
 
 
-
 
NC_012912  Dd1591_0792  methyl-accepting chemotaxis sensory transducer  48.74 
 
 
542 aa  459  9.999999999999999e-129  Dickeya zeae Ech1591  Bacteria  normal  0.821346  n/a   
 
 
-
 
NC_012917  PC1_3412  methyl-accepting chemotaxis sensory transducer  49.13 
 
 
528 aa  455  1e-127  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0936318  n/a   
 
 
-
 
NC_012912  Dd1591_1542  methyl-accepting chemotaxis sensory transducer  38.65 
 
 
566 aa  312  1e-83  Dickeya zeae Ech1591  Bacteria  normal  0.350049  n/a   
 
 
-
 
NC_009436  Ent638_2457  methyl-accepting chemotaxis sensory transducer  38.1 
 
 
555 aa  310  4e-83  Enterobacter sp. 638  Bacteria  normal  0.890786  normal 
 
 
-
 
NC_007963  Csal_2019  methyl-accepting chemotaxis sensory transducer  37.24 
 
 
567 aa  306  5.0000000000000004e-82  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_1514  methyl-accepting chemotaxis sensory transducer  38.76 
 
 
562 aa  305  1.0000000000000001e-81  Dickeya dadantii Ech703  Bacteria  normal  0.957025  n/a   
 
 
-
 
NC_012917  PC1_3679  methyl-accepting chemotaxis sensory transducer  37.76 
 
 
567 aa  304  2.0000000000000002e-81  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_0171  methyl-accepting chemotaxis sensory transducer  39.16 
 
 
648 aa  305  2.0000000000000002e-81  Burkholderia ambifaria AMMD  Bacteria  normal  0.451768  n/a   
 
 
-
 
NC_013421  Pecwa_1857  methyl-accepting chemotaxis sensory transducer  37.24 
 
 
561 aa  305  2.0000000000000002e-81  Pectobacterium wasabiae WPP163  Bacteria  normal  0.769355  n/a   
 
 
-
 
NC_007510  Bcep18194_A3360  methyl-accepting chemotaxis sensory transducer  39.23 
 
 
655 aa  303  7.000000000000001e-81  Burkholderia sp. 383  Bacteria  normal  0.139099  normal 
 
 
-
 
NC_010622  Bphy_0345  methyl-accepting chemotaxis sensory transducer  36.88 
 
 
547 aa  302  9e-81  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010551  BamMC406_0184  methyl-accepting chemotaxis sensory transducer  38.82 
 
 
648 aa  302  1e-80  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_3813  methyl-accepting chemotaxis sensory transducer  39.05 
 
 
617 aa  300  4e-80  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010498  EcSMS35_1298  methyl-accepting chemotaxis protein II  38.43 
 
 
553 aa  299  7e-80  Escherichia coli SMS-3-5  Bacteria  normal  hitchhiker  0.00038087 
 
 
-
 
NC_007951  Bxe_A0121  methyl-accepting chemotaxis sensory transducer  38.77 
 
 
618 aa  298  1e-79  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.487659 
 
 
-
 
NC_012912  Dd1591_1804  methyl-accepting chemotaxis sensory transducer  42.89 
 
 
562 aa  299  1e-79  Dickeya zeae Ech1591  Bacteria  normal  0.0522685  n/a   
 
 
-
 
NC_013421  Pecwa_3873  methyl-accepting chemotaxis sensory transducer  37.29 
 
 
575 aa  297  3e-79  Pectobacterium wasabiae WPP163  Bacteria  normal  0.460221  n/a   
 
 
-
 
NC_009074  BURPS668_3853  methyl-accepting chemotaxis protein II  37.62 
 
 
671 aa  297  3e-79  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A2074  methyl-accepting chemotaxis protein II  43.24 
 
 
553 aa  297  4e-79  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.162752  hitchhiker  0.000345874 
 
 
-
 
NC_009076  BURPS1106A_3934  methyl-accepting chemotaxis protein  37.81 
 
 
673 aa  297  4e-79  Burkholderia pseudomallei 1106a  Bacteria  normal  0.3175  n/a   
 
 
-
 
NC_007434  BURPS1710b_0074  methyl-accepting chemotaxis protein I  37.62 
 
 
673 aa  296  5e-79  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A4786  methyl-accepting chemotaxis protein I  43.27 
 
 
553 aa  296  5e-79  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.709187  normal 
 
 
-
 
NC_006348  BMA2857  methyl-accepting chemotaxis protein, putative  37.62 
 
 
673 aa  296  6e-79  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A3501  methyl-accepting chemotaxis sensory transducer  36.85 
 
 
547 aa  296  6e-79  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.601659  normal 
 
 
-
 
NC_008785  BMASAVP1_A3433  putative methyl-accepting chemotaxis protein  37.62 
 
 
673 aa  296  6e-79  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C2134  methyl-accepting chemotaxis protein II  43 
 
 
553 aa  296  7e-79  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  hitchhiker  1.16019e-17 
 
 
-
 
NC_011205  SeD_A1326  methyl-accepting chemotaxis protein II  43 
 
 
553 aa  296  7e-79  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.452066  hitchhiker  2.3261e-17 
 
 
-
 
NC_011149  SeAg_B1203  methyl-accepting chemotaxis protein II  43 
 
 
553 aa  296  8e-79  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.697919  n/a   
 
 
-
 
NC_008836  BMA10229_A1686  putative methyl-accepting chemotaxis protein  37.62 
 
 
673 aa  296  8e-79  Burkholderia mallei NCTC 10229  Bacteria  normal  0.303273  n/a   
 
 
-
 
NC_009080  BMA10247_3118  putative methyl-accepting chemotaxis protein  37.62 
 
 
673 aa  296  8e-79  Burkholderia mallei NCTC 10247  Bacteria  normal  0.0285227  n/a   
 
 
-
 
NC_010084  Bmul_0167  methyl-accepting chemotaxis sensory transducer  39.51 
 
 
659 aa  296  9e-79  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.677561 
 
 
-
 
NC_011080  SNSL254_A3406  methyl-accepting chemotaxis sensory transducer  36.9 
 
 
547 aa  295  1e-78  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_0562  methyl-accepting chemotaxis sensory transducer  38.26 
 
 
570 aa  295  1e-78  Dickeya dadantii Ech703  Bacteria  decreased coverage  0.00821394  n/a   
 
 
-
 
NC_011149  SeAg_B3326  methyl-accepting chemotaxis sensory transducer  36.9 
 
 
547 aa  295  1e-78  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C3400  methyl-accepting chemotaxis sensory transducer  36.9 
 
 
547 aa  295  1e-78  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.779493 
 
 
-
 
NC_011205  SeD_A4946  methyl-accepting chemotaxis protein I  43.03 
 
 
553 aa  295  1e-78  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.556415 
 
 
-
 
NC_012917  PC1_2609  methyl-accepting chemotaxis sensory transducer  38 
 
 
561 aa  294  2e-78  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_0513  methyl-accepting chemotaxis sensory transducer  37.31 
 
 
586 aa  294  2e-78  Enterobacter sp. 638  Bacteria  normal  hitchhiker  0.00498581 
 
 
-
 
NC_011083  SeHA_C4939  methyl-accepting chemotaxis protein I  43.03 
 
 
553 aa  294  3e-78  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.188217  normal 
 
 
-
 
NC_011080  SNSL254_A4887  methyl-accepting chemotaxis protein I  43.03 
 
 
553 aa  294  3e-78  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_3407  methyl-accepting chemotaxis sensory transducer  42.13 
 
 
545 aa  294  3e-78  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A2079  methyl-accepting chemotaxis protein II  42.75 
 
 
553 aa  293  8e-78  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.429347  hitchhiker  1.96177e-16 
 
 
-
 
NC_011094  SeSA_A3335  methyl-accepting chemotaxis sensory transducer  36.52 
 
 
547 aa  291  1e-77  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal  0.499063 
 
 
-
 
NC_007974  Rmet_4195  methyl-accepting chemotaxis sensory transducer  37.21 
 
 
515 aa  291  2e-77  Cupriavidus metallidurans CH34  Bacteria  normal  0.766107  normal 
 
 
-
 
NC_011353  ECH74115_2624  methyl-accepting chemotaxis protein II  38.27 
 
 
553 aa  290  4e-77  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.784316  hitchhiker  0.00000000183949 
 
 
-
 
CP001509  ECD_01857  methyl-accepting chemotaxis protein II  38.27 
 
 
553 aa  290  5.0000000000000004e-77  Escherichia coli BL21(DE3)  Bacteria  normal  0.13191  n/a   
 
 
-
 
CP001637  EcDH1_1754  methyl-accepting chemotaxis sensory transducer  38.27 
 
 
553 aa  290  5.0000000000000004e-77  Escherichia coli DH1  Bacteria  normal  0.0705276  n/a   
 
 
-
 
NC_010468  EcolC_1746  methyl-accepting chemotaxis sensory transducer  38.27 
 
 
553 aa  290  5.0000000000000004e-77  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_01846  hypothetical protein  38.27 
 
 
553 aa  290  5.0000000000000004e-77  Escherichia coli BL21  Bacteria  normal  0.186429  n/a   
 
 
-
 
NC_009800  EcHS_A1982  methyl-accepting chemotaxis protein II  38.27 
 
 
553 aa  290  5.0000000000000004e-77  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_2119  methyl-accepting chemotaxis protein II  38.27 
 
 
553 aa  290  6e-77  Escherichia coli E24377A  Bacteria  normal  0.0158521  n/a   
 
 
-
 
NC_007651  BTH_I3180  methyl-accepting chemotaxis protein, putative  37.52 
 
 
666 aa  289  8e-77  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_4900  methyl-accepting chemotaxis protein I  38.61 
 
 
554 aa  289  9e-77  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.979291 
 
 
-
 
NC_008060  Bcen_2849  methyl-accepting chemotaxis sensory transducer  38.13 
 
 
659 aa  289  9e-77  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0258  methyl-accepting chemotaxis sensory transducer  38.13 
 
 
659 aa  289  9e-77  Burkholderia cenocepacia HI2424  Bacteria  decreased coverage  0.00414638  n/a   
 
 
-
 
CP001509  ECD_04232  methyl-accepting chemotaxis protein I, serine sensor receptor  38.53 
 
 
551 aa  289  1e-76  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_2983  methyl-accepting chemotaxis sensory transducer  43.7 
 
 
556 aa  288  1e-76  Serratia proteamaculans 568  Bacteria  normal  0.96835  normal 
 
 
-
 
NC_007404  Tbd_1622  methyl-accepting chemotaxis sensory transducer  36.94 
 
 
572 aa  288  1e-76  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.415216  normal 
 
 
-
 
NC_009800  EcHS_A4586  methyl-accepting chemotaxis protein I  38.61 
 
 
557 aa  289  1e-76  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_04198  hypothetical protein  38.53 
 
 
551 aa  289  1e-76  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_5868  methyl-accepting chemotaxis protein I  38.61 
 
 
554 aa  288  1e-76  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_010508  Bcenmc03_0240  methyl-accepting chemotaxis sensory transducer  38.13 
 
 
657 aa  288  2e-76  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0244017  normal 
 
 
-
 
NC_009800  EcHS_A1503  methyl-accepting chemotaxis protein III  37.57 
 
 
546 aa  288  2e-76  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_2238  methyl-accepting chemotaxis sensory transducer  37.57 
 
 
546 aa  288  2e-76  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_3580  methyl-accepting chemotaxis sensory transducer  41.85 
 
 
572 aa  288  2e-76  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_1742  methyl-accepting chemotaxis sensory transducer  37.02 
 
 
579 aa  288  2e-76  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_1940  methyl-accepting chemotaxis sensory transducer  38.75 
 
 
560 aa  287  2.9999999999999996e-76  Pectobacterium wasabiae WPP163  Bacteria  normal  0.364705  n/a   
 
 
-
 
NC_010622  Bphy_2972  methyl-accepting chemotaxis sensory transducer  38.57 
 
 
597 aa  287  2.9999999999999996e-76  Burkholderia phymatum STM815  Bacteria  normal  hitchhiker  0.00113075 
 
 
-
 
NC_010498  EcSMS35_1299  methyl-accepting protein IV  36.83 
 
 
533 aa  286  5e-76  Escherichia coli SMS-3-5  Bacteria  normal  hitchhiker  0.00139959 
 
 
-
 
CP001637  EcDH1_3642  methyl-accepting chemotaxis sensory transducer  38.16 
 
 
551 aa  286  5.999999999999999e-76  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2108  methyl-accepting chemotaxis sensory transducer  38.97 
 
 
556 aa  286  5.999999999999999e-76  Dickeya dadantii Ech703  Bacteria  normal  0.0190315  n/a   
 
 
-
 
NC_009801  EcE24377A_4947  methyl-accepting chemotaxis protein I  38.42 
 
 
554 aa  286  5.999999999999999e-76  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_0380  methyl-accepting chemotaxis sensory transducer  42.13 
 
 
549 aa  286  5.999999999999999e-76  Enterobacter sp. 638  Bacteria  normal  0.214895  normal 
 
 
-
 
NC_010468  EcolC_3700  methyl-accepting chemotaxis sensory transducer  38.42 
 
 
554 aa  286  7e-76  Escherichia coli ATCC 8739  Bacteria  normal  normal  0.125609 
 
 
-
 
CP001509  ECD_01378  methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor  37.31 
 
 
546 aa  286  8e-76  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_2225  methyl-accepting chemotaxis sensory transducer  37.31 
 
 
546 aa  286  8e-76  Escherichia coli DH1  Bacteria  normal  0.213228  n/a   
 
 
-
 
NC_012912  Dd1591_1535  methyl-accepting chemotaxis sensory transducer  37.5 
 
 
574 aa  286  8e-76  Dickeya zeae Ech1591  Bacteria  normal  0.241891  n/a   
 
 
-
 
NC_012892  B21_01390  hypothetical protein  37.31 
 
 
546 aa  286  8e-76  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_1600  methyl-accepting chemotaxis protein III  37.31 
 
 
546 aa  286  8e-76  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1208  methyl-accepting chemotaxis sensory transducer  39.17 
 
 
555 aa  286  8e-76  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  unclonable  0.000392698  n/a   
 
 
-
 
NC_011080  SNSL254_A1740  methyl-accepting chemotaxis protein III  38.52 
 
 
541 aa  285  1.0000000000000001e-75  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_0620  methyl-accepting chemotaxis sensory transducer  35.51 
 
 
549 aa  285  1.0000000000000001e-75  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.0437284 
 
 
-
 
NC_011149  SeAg_B1531  methyl-accepting chemotaxis protein III  38.52 
 
 
541 aa  285  1.0000000000000001e-75  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E4893  methyl-accepting chemotaxis protein I  38.35 
 
 
551 aa  285  1.0000000000000001e-75  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_1631  methyl-accepting chemotaxis protein  36.82 
 
 
579 aa  285  2.0000000000000002e-75  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_2026  methyl-accepting chemotaxis protein III  40.27 
 
 
470 aa  284  2.0000000000000002e-75  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  hitchhiker  0.000000214401 
 
 
-
 
NC_009436  Ent638_2456  methyl-accepting protein IV  36.76 
 
 
533 aa  285  2.0000000000000002e-75  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A1716  methyl-accepting chemotaxis protein III  38.33 
 
 
541 aa  284  3.0000000000000004e-75  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.0288519 
 
 
-
 
NC_011083  SeHA_C1804  methyl-accepting chemotaxis protein III  38.33 
 
 
535 aa  284  4.0000000000000003e-75  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_010159  YpAngola_A3516  methyl-accepting chemotaxis protein  40.69 
 
 
557 aa  283  4.0000000000000003e-75  Yersinia pestis Angola  Bacteria  normal  normal  0.698348 
 
 
-
 
NC_011094  SeSA_A1744  methyl-accepting chemotaxis protein III  38.33 
 
 
535 aa  283  5.000000000000001e-75  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.693576  normal  0.460124 
 
 
-
 
NC_010658  SbBS512_E2178  methyl-accepting protein IV  36.76 
 
 
533 aa  283  5.000000000000001e-75  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
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