More than 300 homologs were found in PanDaTox collection
for query gene PC1_2046 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013421  Pecwa_2347  drug resistance transporter, EmrB/QacA subfamily  95.15 
 
 
495 aa  943    Pectobacterium wasabiae WPP163  Bacteria  normal  0.0698693  n/a   
 
 
-
 
NC_009832  Spro_2286  EmrB/QacA family drug resistance transporter  66.87 
 
 
495 aa  634    Serratia proteamaculans 568  Bacteria  normal  0.349328  normal  0.456862 
 
 
-
 
NC_012917  PC1_2046  drug resistance transporter, EmrB/QacA subfamily  100 
 
 
495 aa  983    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.838973  n/a   
 
 
-
 
NC_013525  Tter_0751  drug resistance transporter, EmrB/QacA subfamily  41.49 
 
 
491 aa  349  8e-95  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_012850  Rleg_0169  major facilitator superfamily MFS_1  38.89 
 
 
496 aa  340  2.9999999999999998e-92  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0884  major facilitator transporter  43.93 
 
 
486 aa  336  5e-91  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_0160  major facilitator superfamily MFS_1  38.4 
 
 
496 aa  333  5e-90  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0154454 
 
 
-
 
NC_011894  Mnod_1358  major facilitator superfamily MFS_1  43.93 
 
 
489 aa  328  2.0000000000000001e-88  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.5787  n/a   
 
 
-
 
NC_010622  Bphy_1166  major facilitator transporter  38.82 
 
 
500 aa  324  2e-87  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_5357  major facilitator superfamily MFS_1  39.71 
 
 
497 aa  318  1e-85  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.987143 
 
 
-
 
NC_013235  Namu_2939  major facilitator superfamily MFS_1  39.09 
 
 
500 aa  318  1e-85  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00137  hitchhiker  0.0000457887 
 
 
-
 
NC_007760  Adeh_3710  EmrB/QacA family drug resistance transporter  42.22 
 
 
489 aa  316  7e-85  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_0668  major facilitator transporter  39.39 
 
 
490 aa  313  5.999999999999999e-84  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009668  Oant_3267  major facilitator transporter  39.17 
 
 
487 aa  311  1e-83  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.309977  n/a   
 
 
-
 
NC_011145  AnaeK_3767  major facilitator superfamily MFS_1  41.23 
 
 
491 aa  311  1e-83  Anaeromyxobacter sp. K  Bacteria  normal  0.952675  n/a   
 
 
-
 
NC_008148  Rxyl_2210  EmrB/QacA family drug resistance transporter  42.62 
 
 
502 aa  310  4e-83  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_3850  major facilitator superfamily MFS_1  41.48 
 
 
491 aa  310  5e-83  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.330919  n/a   
 
 
-
 
NC_010184  BcerKBAB4_4540  EmrB/QacA family drug resistance transporter  37.47 
 
 
480 aa  306  5.0000000000000004e-82  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4459  multidrug resistance protein B  37.34 
 
 
478 aa  304  2.0000000000000002e-81  Bacillus cereus E33L  Bacteria  normal  0.0324211  n/a   
 
 
-
 
NC_005945  BAS4605  EmrB/QacA family drug resistance transporter  37.14 
 
 
478 aa  303  3.0000000000000004e-81  Bacillus anthracis str. Sterne  Bacteria  decreased coverage  0.00000135395  n/a   
 
 
-
 
NC_005957  BT9727_4441  multidrug resistance protein B  37.14 
 
 
478 aa  304  3.0000000000000004e-81  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  0.00000000000526976  n/a   
 
 
-
 
NC_007530  GBAA_4961  EmrB/QacA family drug resistance transporter  37.14 
 
 
478 aa  303  3.0000000000000004e-81  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0262919  n/a   
 
 
-
 
NC_011725  BCB4264_A4821  drug resistance transporter, EmrB/QacA family  37.14 
 
 
479 aa  304  3.0000000000000004e-81  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_4851  EmrB/QacA family drug resistance transporter  36.93 
 
 
478 aa  302  8.000000000000001e-81  Bacillus cereus ATCC 10987  Bacteria  normal  0.16573  n/a   
 
 
-
 
NC_011772  BCG9842_B0415  drug resistance transporter, EmrB/QacA family  36.93 
 
 
479 aa  302  1e-80  Bacillus cereus G9842  Bacteria  hitchhiker  0.00273768  normal 
 
 
-
 
NC_013757  Gobs_2558  major facilitator superfamily MFS_1  40.14 
 
 
548 aa  301  2e-80  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.573295  n/a   
 
 
-
 
NC_007952  Bxe_B1252  major facilitator superfamily multidrug efflux transporter  39.59 
 
 
517 aa  300  3e-80  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_011773  BCAH820_4827  drug resistance transporter, EmrB/QacA family  37.55 
 
 
469 aa  300  4e-80  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_009767  Rcas_2747  EmrB/QacA family drug resistance transporter  37.08 
 
 
500 aa  300  5e-80  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_3679  major facilitator superfamily MFS_1  40.76 
 
 
523 aa  295  1e-78  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009674  Bcer98_3372  EmrB/QacA family drug resistance transporter  36.75 
 
 
476 aa  294  2e-78  Bacillus cytotoxicus NVH 391-98  Bacteria  unclonable  0.000000356155  n/a   
 
 
-
 
NC_008541  Arth_1959  major facilitator transporter  39.61 
 
 
488 aa  293  4e-78  Arthrobacter sp. FB24  Bacteria  normal  0.789773  n/a   
 
 
-
 
NC_008699  Noca_0270  major facilitator transporter  41.47 
 
 
497 aa  293  4e-78  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_3844  major facilitator transporter  38.02 
 
 
481 aa  288  1e-76  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.50058  normal  0.461173 
 
 
-
 
NC_009523  RoseRS_2504  EmrB/QacA family drug resistance transporter  35.68 
 
 
501 aa  283  6.000000000000001e-75  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.300835 
 
 
-
 
NC_013216  Dtox_1815  major facilitator superfamily MFS_1  39.75 
 
 
448 aa  276  7e-73  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.39624  normal  0.935092 
 
 
-
 
NC_008578  Acel_1890  EmrB/QacA family drug resistance transporter  37.96 
 
 
569 aa  272  9e-72  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_3147  drug resistance transporter, EmrB/QacA subfamily  34.05 
 
 
541 aa  268  2e-70  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_2605  drug resistance transporter, EmrB/QacA subfamily  39.36 
 
 
506 aa  263  4e-69  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_2169  EmrB/QacA family drug resistance transporter  36.91 
 
 
554 aa  263  4e-69  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_2703  EmrB/QacA family drug resistance transporter  33.61 
 
 
511 aa  263  4.999999999999999e-69  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.445725  n/a   
 
 
-
 
NC_011725  BCB4264_A4105  drug resistance transporter, EmrB/QacA family  31.52 
 
 
513 aa  263  6e-69  Bacillus cereus B4264  Bacteria  decreased coverage  0.00176585  n/a   
 
 
-
 
NC_005945  BAS3910  EmrB/QacA family drug resistance transporter  32.26 
 
 
513 aa  262  1e-68  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.0000020213  n/a   
 
 
-
 
NC_007530  GBAA_4216  EmrB/QacA family drug resistance transporter  32.26 
 
 
513 aa  262  1e-68  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.0000000209346  n/a   
 
 
-
 
NC_011772  BCG9842_B1134  drug resistance transporter, EmrB/QacA family  31.31 
 
 
513 aa  262  1e-68  Bacillus cereus G9842  Bacteria  decreased coverage  0.000000214385  normal 
 
 
-
 
NC_003909  BCE_4051  EmrB/QacA family drug resistance transporter  32.47 
 
 
513 aa  261  2e-68  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.000130909  n/a   
 
 
-
 
NC_005957  BT9727_3742  multidrug-efflux transporter  32.26 
 
 
513 aa  261  2e-68  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  0.00000000000625397  n/a   
 
 
-
 
NC_006274  BCZK3758  multidrug-efflux transporter  32.26 
 
 
513 aa  261  2e-68  Bacillus cereus E33L  Bacteria  decreased coverage  0.000783495  n/a   
 
 
-
 
NC_011773  BCAH820_4018  drug resistance transporter, EmrB/QacA family  32.26 
 
 
513 aa  261  2e-68  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011830  Dhaf_0528  major facilitator superfamily MFS_1  36.27 
 
 
484 aa  261  2e-68  Desulfitobacterium hafniense DCB-2  Bacteria  unclonable  0.00000000000187583  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3829  EmrB/QacA family drug resistance transporter  32.83 
 
 
513 aa  261  2e-68  Bacillus weihenstephanensis KBAB4  Bacteria  decreased coverage  0.000236934  n/a   
 
 
-
 
NC_011658  BCAH187_A4122  drug resistance transporter, EmrB/QacA family  32.48 
 
 
513 aa  261  2e-68  Bacillus cereus AH187  Bacteria  unclonable  0.0000000107671  n/a   
 
 
-
 
NC_011658  BCAH187_A4845  drug resistance transporter, EmrB/QacA family  36.01 
 
 
431 aa  259  7e-68  Bacillus cereus AH187  Bacteria  hitchhiker  0.000942514  n/a   
 
 
-
 
NC_014158  Tpau_0550  tRNA-guanine transglycosylase, various specificities  38.15 
 
 
1062 aa  257  4e-67  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_2150  major facilitator superfamily MFS_1  37.99 
 
 
480 aa  256  6e-67  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.308405  n/a   
 
 
-
 
NC_011831  Cagg_0237  drug resistance transporter, EmrB/QacA subfamily  36.55 
 
 
621 aa  256  6e-67  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_013526  Tter_2612  drug resistance transporter, EmrB/QacA subfamily  32.81 
 
 
565 aa  255  1.0000000000000001e-66  Thermobaculum terrenum ATCC BAA-798  Bacteria  unclonable  0.000000000331464  n/a   
 
 
-
 
NC_014165  Tbis_1314  EmrB/QacA subfamily drug resistance transporter  36.22 
 
 
535 aa  254  2.0000000000000002e-66  Thermobispora bispora DSM 43833  Bacteria  decreased coverage  0.00952843  normal  0.308238 
 
 
-
 
NC_008146  Mmcs_2756  EmrB/QacA family drug resistance transporter  33.54 
 
 
682 aa  253  4.0000000000000004e-66  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_2800  EmrB/QacA family drug resistance transporter  33.54 
 
 
682 aa  253  4.0000000000000004e-66  Mycobacterium sp. KMS  Bacteria  normal  0.375758  normal  0.713659 
 
 
-
 
NC_009077  Mjls_2786  EmrB/QacA family drug resistance transporter  33.54 
 
 
682 aa  253  4.0000000000000004e-66  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_4864  drug resistance transporter, EmrB/QacA subfamily  35.07 
 
 
685 aa  253  7e-66  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1220  major facilitator superfamily MFS_1  34.81 
 
 
450 aa  252  9.000000000000001e-66  Geobacillus sp. WCH70  Bacteria  normal  0.434652  n/a   
 
 
-
 
NC_013411  GYMC61_3298  drug resistance transporter, EmrB/QacA subfamily  33.12 
 
 
538 aa  251  3e-65  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010338  Caul_0241  EmrB/QacA family drug resistance transporter  34.75 
 
 
523 aa  250  3e-65  Caulobacter sp. K31  Bacteria  normal  0.232516  normal 
 
 
-
 
NC_008148  Rxyl_0614  EmrB/QacA family drug resistance transporter  31.43 
 
 
607 aa  250  5e-65  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.222069  n/a   
 
 
-
 
NC_013739  Cwoe_3291  drug resistance transporter, EmrB/QacA subfamily  37.91 
 
 
666 aa  249  8e-65  Conexibacter woesei DSM 14684  Bacteria  normal  0.47407  normal 
 
 
-
 
NC_009436  Ent638_0043  EmrB/QacA family drug resistance transporter  34.53 
 
 
504 aa  249  1e-64  Enterobacter sp. 638  Bacteria  normal  0.258133  normal  0.869121 
 
 
-
 
NC_008010  Dgeo_2674  EmrB/QacA family drug resistance transporter  37.21 
 
 
684 aa  248  3e-64  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_05770  drug resistance transporter, EmrB/QacA subfamily  35.54 
 
 
528 aa  246  4.9999999999999997e-64  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.148276  normal 
 
 
-
 
NC_008835  BMA10229_0550  EmrB/QacA family drug resistance transporter  37.05 
 
 
504 aa  246  4.9999999999999997e-64  Burkholderia mallei NCTC 10229  Bacteria  normal  0.976745  n/a   
 
 
-
 
NC_009079  BMA10247_A1016  EmrB/QacA family drug resistance transporter  37.05 
 
 
504 aa  246  4.9999999999999997e-64  Burkholderia mallei NCTC 10247  Bacteria  normal  0.80336  n/a   
 
 
-
 
NC_006349  BMAA1299  EmrB/QacA family drug resistance transporter  37.05 
 
 
504 aa  246  8e-64  Burkholderia mallei ATCC 23344  Bacteria  normal  0.144452  n/a   
 
 
-
 
NC_007435  BURPS1710b_A2533  EmrB/QacA family drug resistance transporter  37.05 
 
 
519 aa  246  8e-64  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II1465  EmrB/QacA family drug resistance transporter  37.05 
 
 
504 aa  246  8e-64  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_0279  EmrB/QacA family drug resistance transporter  37.05 
 
 
504 aa  246  8e-64  Burkholderia mallei SAVP1  Bacteria  normal  0.2584  n/a   
 
 
-
 
NC_011725  BCB4264_A0695  putative multidrug resistance protein  33.89 
 
 
537 aa  246  9e-64  Bacillus cereus B4264  Bacteria  normal  0.0299481  n/a   
 
 
-
 
NC_011772  BCG9842_B4643  putative multidrug resistance protein  33.89 
 
 
537 aa  245  9.999999999999999e-64  Bacillus cereus G9842  Bacteria  hitchhiker  0.00119486  unclonable  1.5256899999999999e-25 
 
 
-
 
NC_010184  BcerKBAB4_0577  EmrB/QacA family drug resistance transporter  33.89 
 
 
537 aa  245  9.999999999999999e-64  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A1356  EmrB/QacA family drug resistance transporter  37.05 
 
 
504 aa  245  9.999999999999999e-64  Burkholderia pseudomallei 668  Bacteria  normal  0.991135  n/a   
 
 
-
 
NC_013411  GYMC61_2100  major facilitator superfamily MFS_1  35.63 
 
 
449 aa  245  9.999999999999999e-64  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011898  Ccel_0411  drug resistance transporter, EmrB/QacA subfamily  34.27 
 
 
531 aa  244  1.9999999999999999e-63  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1278  EmrB/QacA family drug resistance transporter  37.05 
 
 
504 aa  245  1.9999999999999999e-63  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2387  major facilitator transporter  34.86 
 
 
511 aa  244  3e-63  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_2916  EmrB/QacA family drug resistance transporter  29.77 
 
 
511 aa  243  3.9999999999999997e-63  Bacillus cereus ATCC 10987  Bacteria  normal  0.0905383  n/a   
 
 
-
 
NC_011725  BCB4264_A3171  Mdr  32.39 
 
 
507 aa  243  3.9999999999999997e-63  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2685  EmrB/QacA family drug resistance transporter  31.4 
 
 
511 aa  243  5e-63  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0846353  n/a   
 
 
-
 
NC_009832  Spro_2480  EmrB/QacA family drug resistance transporter  33.61 
 
 
504 aa  243  5e-63  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_2919  drug resistance transporter, EmrB/QacA subfamily  31.97 
 
 
508 aa  243  6e-63  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013235  Namu_0763  drug resistance transporter, EmrB/QacA subfamily  36.8 
 
 
641 aa  243  6e-63  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_3285  EmrB/QacA family drug resistance transporter  33.7 
 
 
501 aa  243  7.999999999999999e-63  Pseudomonas putida GB-1  Bacteria  normal  normal  0.791434 
 
 
-
 
NC_011658  BCAH187_A2928  drug resistance transporter, EmrB/QacA family  30.94 
 
 
511 aa  242  9e-63  Bacillus cereus AH187  Bacteria  hitchhiker  0.000585053  n/a   
 
 
-
 
NC_011772  BCG9842_B2351  drug resistance transporter, EmrB/QacA family  30.91 
 
 
504 aa  242  1e-62  Bacillus cereus G9842  Bacteria  hitchhiker  0.00500074  normal  0.144653 
 
 
-
 
NC_007777  Francci3_0717  EmrB/QacA family drug resistance transporter  37.72 
 
 
558 aa  241  1e-62  Frankia sp. CcI3  Bacteria  normal  normal  0.770491 
 
 
-
 
NC_014210  Ndas_4163  drug resistance transporter, EmrB/QacA subfamily  35.89 
 
 
676 aa  242  1e-62  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_3186  drug transport protein, putative  31.93 
 
 
507 aa  241  2e-62  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0574  multidrug resistance protein B; sugar (and other) transporter  33.73 
 
 
537 aa  241  2e-62  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0573  multidrug-efflux transporter  33.73 
 
 
537 aa  241  2e-62  Bacillus cereus E33L  Bacteria  normal  0.0295676  n/a   
 
 
-
 
NC_011773  BCAH820_0720  putative multidrug resistance protein  33.73 
 
 
537 aa  241  2e-62  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  3.55065e-20 
 
 
-
 
NC_011658  BCAH187_A0792  putative multidrug resistance protein  33.73 
 
 
537 aa  241  2e-62  Bacillus cereus AH187  Bacteria  hitchhiker  0.0000149033  n/a   
 
 
-
 
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