8 homologs were found in PanDaTox collection
for query gene Oter_0019 on replicon NC_010571
Organism: Opitutus terrae PB90-1



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010571  Oter_0019  transcription activator effector binding  100 
 
 
176 aa  357  5e-98  Opitutus terrae PB90-1  Bacteria  normal  0.833859  normal  0.221599 
 
 
-
 
NC_011899  Hore_03630  transcription activator effector binding  33.74 
 
 
231 aa  85.9  3e-16  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000171758  n/a   
 
 
-
 
NC_013530  Xcel_2778  transcriptional regulator, MerR family  33.73 
 
 
305 aa  68.9  0.00000000003  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.779446  n/a   
 
 
-
 
NC_013517  Sterm_3186  transcriptional regulator, MerR family  32.56 
 
 
327 aa  57  0.0000001  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0186  transcriptional regulator, AraC family  30.82 
 
 
452 aa  53.5  0.000002  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_2703  transcription activator, effector binding  31.97 
 
 
326 aa  46.2  0.0003  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.268178 
 
 
-
 
NC_010001  Cphy_3049  MerR family transcriptional regulator  31.67 
 
 
335 aa  44.3  0.0009  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_0114  transcriptional regulator, MerR family  28.57 
 
 
329 aa  43.1  0.002  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00000486675  n/a   
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>