26 homologs were found in PanDaTox collection
for query gene Noca_2219 on replicon NC_008699
Organism: Nocardioides sp. JS614



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_008699  Noca_2219  helix-turn-helix domain-containing protein  100 
 
 		 146 aa  284  4e-76  Nocardioides sp. JS614  Bacteria  normal  1  n/a   
 
 
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NC_008699  Noca_2176  helix-turn-helix domain-containing protein  77.33 
 
 		 125 aa  111  3e-24  Nocardioides sp. JS614  Bacteria  normal  1  n/a   
 
 
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NC_013757  Gobs_0666  transcriptional regulator, XRE family  40.91 
 
 		 150 aa  75.5  0.0000000000003  Geodermatophilus obscurus DSM 43160  Bacteria  normal  1  n/a   
 
 
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NC_009253  Dred_0903  helix-turn-helix domain-containing protein  33.06 
 
 		 255 aa  48.1  0.00003  Desulfotomaculum reducens MI-1  Bacteria  unclonable  0.0000000193278  n/a   
 
 
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NC_009832  Spro_4126  XRE family transcriptional regulator  43.1 
 
 		 84 aa  46.2  0.0002  Serratia proteamaculans 568  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011004  Rpal_3572  transcriptional regulator, XRE family  38.96 
 
 		 121 aa  45.1  0.0003  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.405573  n/a   
 
 
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NC_014148  Plim_2141  helix-turn-helix domain protein  37.7 
 
 		 82 aa  44.7  0.0005  Planctomyces limnophilus DSM 3776  Bacteria  normal  1  n/a   
 
 
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NC_012912  Dd1591_1498  transcriptional regulator, XRE family  39.66 
 
 		 92 aa  43.5  0.0008  Dickeya zeae Ech1591  Bacteria  normal  1  n/a   
 
 
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NC_008530  LGAS_0638  XRE family transcriptional regulator  37.5 
 
 		 74 aa  43.5  0.001  Lactobacillus gasseri ATCC 33323  Bacteria  hitchhiker  0.000000543981  normal  1 
 
 
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NC_008530  LGAS_0576  XRE family transcriptional regulator  37.5 
 
 		 74 aa  43.5  0.001  Lactobacillus gasseri ATCC 33323  Bacteria  decreased coverage  0.00000000000016932  normal  0.922143 
 
 
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NC_013165  Shel_25890  predicted transcriptional regulator  32.08 
 
 		 272 aa  43.1  0.001  Slackia heliotrinireducens DSM 20476  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013385  Adeg_1668  transcriptional regulator, XRE family  31.97 
 
 		 256 aa  42.7  0.002  Ammonifex degensii KC4  Bacteria  hitchhiker  0.0000000231765  n/a   
 
 
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NC_007614  Nmul_A1531  XRE family transcriptional regulator  42.37 
 
 		 189 aa  42.4  0.002  Nitrosospira multiformis ATCC 25196  Bacteria  unclonable  0.0000000256618  n/a   
 
 
-
 
NC_010524  Lcho_4294  XRE family transcriptional regulator  34.18 
 
 		 374 aa  42.7  0.002  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  1 
 
 
-
 
NC_011884  Cyan7425_4293  transcriptional regulator, XRE family  30 
 
 		 239 aa  42.7  0.002  Cyanothece sp. PCC 7425  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011885  Cyan7425_0143  transcriptional regulator, XRE family  41.07 
 
 		 825 aa  42.7  0.002  Cyanothece sp. PCC 7425  Bacteria  n/a    normal  0.514651 
 
 
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NC_013926  Aboo_1419  transcriptional regulator, XRE family  44.44 
 
 		 178 aa  41.6  0.003  Aciduliprofundum boonei T469  Archaea  normal  1  n/a   
 
 
-
 
NC_008255  CHU_1489  hypothetical protein  36.26 
 
 		 365 aa  41.6  0.003  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0715409  decreased coverage  0.000118566 
 
 
-
 
NC_007644  Moth_1827  XRE family transcriptional regulator  32.28 
 
 		 252 aa  42  0.003  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0400601  normal  1 
 
 
-
 
NC_009921  Franean1_0062  hypothetical protein  40.35 
 
 		 394 aa  41.6  0.004  Frankia sp. EAN1pec  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011830  Dhaf_1621  transcriptional regulator, XRE family  40.68 
 
 		 368 aa  41.6  0.004  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_009339  Mflv_5468  XRE family transcriptional regulator  35.16 
 
 		 174 aa  41.2  0.005  Mycobacterium gilvum PYR-GCK  Bacteria  normal  1  normal  0.624713 
 
 
-
 
NC_007644  Moth_1627  XRE family transcriptional regulator  34.92 
 
 		 300 aa  41.2  0.005  Moorella thermoacetica ATCC 39073  Bacteria  decreased coverage  0.0000000000332957  normal  1 
 
 
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NC_009616  Tmel_1478  XRE family transcriptional regulator  43.14 
 
 		 72 aa  40.8  0.007  Thermosipho melanesiensis BI429  Bacteria  normal  1  n/a   
 
 
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NC_008609  Ppro_1907  XRE family transcriptional regulator  42.31 
 
 		 107 aa  40.8  0.007  Pelobacter propionicus DSM 2379  Bacteria  normal  1  n/a   
 
 
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NC_011830  Dhaf_2097  transcriptional regulator, XRE family  34.85 
 
 		 361 aa  40  0.01  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.961796  n/a   
 
 
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