More than 300 homologs were found in PanDaTox collection
for query gene Noca_1398 on replicon NC_008699
Organism: Nocardioides sp. JS614



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008699  Noca_1398  cell envelope-related transcriptional attenuator  100 
 
 
481 aa  975    Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_1258  cell envelope-related transcriptional attenuator  38.44 
 
 
549 aa  292  9e-78  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000000145407 
 
 
-
 
NC_008541  Arth_1187  cell envelope-related transcriptional attenuator  37.47 
 
 
546 aa  276  5e-73  Arthrobacter sp. FB24  Bacteria  normal  0.208279  n/a   
 
 
-
 
NC_013595  Sros_9275  Transcriptional regulator-like protein  33.98 
 
 
457 aa  250  5e-65  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_0017  cell envelope-related transcriptional attenuator  34.56 
 
 
472 aa  239  6.999999999999999e-62  Thermobifida fusca YX  Bacteria  hitchhiker  0.00643877  n/a   
 
 
-
 
NC_012803  Mlut_05220  cell envelope-related function transcriptional attenuator common domain protein  35.78 
 
 
537 aa  237  3e-61  Micrococcus luteus NCTC 2665  Bacteria  normal  0.855799  n/a   
 
 
-
 
NC_014165  Tbis_2169  cell envelope-related transcriptional attenuator  35.86 
 
 
504 aa  235  2.0000000000000002e-60  Thermobispora bispora DSM 43833  Bacteria  normal  0.188939  normal 
 
 
-
 
NC_014210  Ndas_1419  cell envelope-related transcriptional attenuator  35.33 
 
 
511 aa  234  3e-60  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.327426  normal 
 
 
-
 
NC_014165  Tbis_1877  cell envelope-related transcriptional attenuator  36.47 
 
 
539 aa  233  7.000000000000001e-60  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.801543 
 
 
-
 
NC_013172  Bfae_09180  cell envelope-related function transcriptional attenuator common domain  37.35 
 
 
791 aa  229  1e-58  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_6456  Transcriptional regulator-like protein  34.1 
 
 
543 aa  226  6e-58  Streptosporangium roseum DSM 43021  Bacteria  normal  hitchhiker  0.00855962 
 
 
-
 
NC_013510  Tcur_2629  cell envelope-related transcriptional attenuator  34.72 
 
 
496 aa  226  8e-58  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00000175757  n/a   
 
 
-
 
NC_007333  Tfu_1372  cell envelope-related transcriptional attenuator  33.82 
 
 
490 aa  226  9e-58  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_3414  Transcriptional regulator-like protein  34.91 
 
 
609 aa  218  2e-55  Streptosporangium roseum DSM 43021  Bacteria  normal  0.442542  normal  0.390313 
 
 
-
 
NC_013169  Ksed_26120  cell envelope-related function transcriptional attenuator common domain protein  30.49 
 
 
497 aa  200  3.9999999999999996e-50  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_4982  cell envelope-related transcriptional attenuator  33.2 
 
 
523 aa  187  4e-46  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_2614  cell envelope-related transcriptional attenuator  37.11 
 
 
508 aa  174  1.9999999999999998e-42  Nocardioides sp. JS614  Bacteria  normal  0.235431  n/a   
 
 
-
 
NC_009767  Rcas_0369  cell envelope-related transcriptional attenuator  28.14 
 
 
356 aa  96.7  8e-19  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.117824  normal  0.3088 
 
 
-
 
NC_010424  Daud_2095  cell envelope-related transcriptional attenuator  29.29 
 
 
411 aa  96.3  1e-18  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_0131  cell envelope-related transcriptional attenuator  28.12 
 
 
353 aa  92.4  2e-17  Roseiflexus sp. RS-1  Bacteria  normal  0.763008  normal 
 
 
-
 
NC_009253  Dred_3112  cell envelope-related transcriptional attenuator  27.23 
 
 
419 aa  91.7  3e-17  Desulfotomaculum reducens MI-1  Bacteria  normal  0.0132049  n/a   
 
 
-
 
NC_013216  Dtox_4120  cell envelope-related transcriptional attenuator  26.91 
 
 
445 aa  90.5  7e-17  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.0000955467  unclonable  0.000000000378568 
 
 
-
 
NC_004116  SAG0368  hypothetical protein  27.27 
 
 
435 aa  89.7  9e-17  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_013203  Apar_1295  cell envelope-related transcriptional attenuator  31.7 
 
 
407 aa  89  2e-16  Atopobium parvulum DSM 20469  Bacteria  normal  normal  0.865299 
 
 
-
 
NC_014210  Ndas_0934  cell envelope-related transcriptional attenuator  28.02 
 
 
480 aa  85.9  0.000000000000002  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.0202033 
 
 
-
 
NC_008532  STER_0378  transcriptional regulator  28.44 
 
 
408 aa  85.9  0.000000000000002  Streptococcus thermophilus LMD-9  Bacteria  hitchhiker  0.0016641  n/a   
 
 
-
 
NC_009664  Krad_0030  cell envelope-related transcriptional attenuator  27.98 
 
 
506 aa  83.6  0.000000000000007  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0770441 
 
 
-
 
NC_014210  Ndas_0935  cell envelope-related transcriptional attenuator  25.76 
 
 
465 aa  82.8  0.00000000000001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.0761113 
 
 
-
 
NC_009767  Rcas_0015  cell envelope-related transcriptional attenuator  29.33 
 
 
503 aa  82.8  0.00000000000001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.0348648  hitchhiker  0.0000779954 
 
 
-
 
NC_012793  GWCH70_3272  membrane-bound transcriptional regulator LytR  26.03 
 
 
310 aa  80.5  0.00000000000006  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.000512755  n/a   
 
 
-
 
NC_011830  Dhaf_4100  cell envelope-related transcriptional attenuator  25.66 
 
 
426 aa  80.1  0.00000000000009  Desulfitobacterium hafniense DCB-2  Bacteria  unclonable  0.000000000000199964  n/a   
 
 
-
 
NC_011725  BCB4264_A5387  membrane-bound transcriptional regulator LytR  26.87 
 
 
299 aa  79.7  0.0000000000001  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0717  cell envelope-related transcriptional attenuator  29.18 
 
 
504 aa  79  0.0000000000002  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0100935 
 
 
-
 
NC_013411  GYMC61_3243  cell envelope-related transcriptional attenuator  25.52 
 
 
335 aa  78.6  0.0000000000003  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012793  GWCH70_3046  cell envelope-related transcriptional attenuator  21.99 
 
 
322 aa  78.6  0.0000000000003  Geobacillus sp. WCH70  Bacteria  normal  0.634845  n/a   
 
 
-
 
NC_013235  Namu_4976  cell envelope-related transcriptional attenuator  31.05 
 
 
551 aa  77.8  0.0000000000004  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_3186  cell envelope-related transcriptional attenuator  26.42 
 
 
451 aa  77.4  0.0000000000005  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal  0.689692 
 
 
-
 
NC_009523  RoseRS_4519  cell envelope-related transcriptional attenuator  29.69 
 
 
505 aa  77  0.0000000000007  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_0711  cell envelope-related transcriptional attenuator  34.42 
 
 
526 aa  76.6  0.0000000000008  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_1433  cell envelope-related transcriptional attenuator  28.7 
 
 
332 aa  76.6  0.0000000000008  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009674  Bcer98_0803  cell envelope-related transcriptional attenuator  24.21 
 
 
317 aa  76.6  0.0000000000009  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_3385  membrane-bound transcriptional regulator LytR  25.54 
 
 
313 aa  76.3  0.000000000001  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_003909  BCE_5306  LytR family transcription antiterminator  24.83 
 
 
377 aa  75.5  0.000000000002  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_5383  membrane-bound transcriptional regulator LytR  27.36 
 
 
302 aa  75.5  0.000000000002  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_2526  cell envelope-related transcriptional attenuator  27.57 
 
 
478 aa  75.1  0.000000000003  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_3496  cell envelope-related transcriptional attenuator  25.94 
 
 
486 aa  74.7  0.000000000004  Frankia sp. CcI3  Bacteria  normal  0.625789  normal  0.409021 
 
 
-
 
NC_011661  Dtur_0400  cell envelope-related transcriptional attenuator  23.83 
 
 
308 aa  74.3  0.000000000005  Dictyoglomus turgidum DSM 6724  Bacteria  hitchhiker  0.000000257107  n/a   
 
 
-
 
NC_011658  BCAH187_A5364  transcription antiterminator, LytR family  24.48 
 
 
377 aa  73.9  0.000000000005  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3783  cell envelope-related transcriptional attenuator  24.73 
 
 
367 aa  73.9  0.000000000005  Clostridium phytofermentans ISDg  Bacteria  normal  0.1003  n/a   
 
 
-
 
NC_013525  Tter_0570  cell envelope-related transcriptional attenuator  25.79 
 
 
377 aa  73.9  0.000000000006  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009674  Bcer98_3735  cell envelope-related transcriptional attenuator  25.26 
 
 
383 aa  73.9  0.000000000006  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4877  LytR family transcriptional regulator  24.48 
 
 
375 aa  73.6  0.000000000007  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4892  LytR family transcriptional regulator  24.48 
 
 
375 aa  73.6  0.000000000007  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_1996  cell envelope-related transcriptional attenuator  27.38 
 
 
527 aa  73.6  0.000000000007  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.177975 
 
 
-
 
NC_011830  Dhaf_3430  cell envelope-related transcriptional attenuator  26.6 
 
 
439 aa  73.6  0.000000000008  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.0225853  n/a   
 
 
-
 
NC_011773  BCAH820_5288  transcription antiterminator, LytR family  24.48 
 
 
375 aa  73.6  0.000000000008  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000327862 
 
 
-
 
NC_005945  BAS5047  LytR family transcription antiterminator  24.48 
 
 
375 aa  73.2  0.00000000001  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_3844  cell envelope-related protein transcriptional attenuator  27.93 
 
 
373 aa  72.8  0.00000000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_007530  GBAA_5432  LytR family transcription antiterminator  24.48 
 
 
375 aa  73.2  0.00000000001  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_1399  cell envelope-related transcriptional attenuator  25.1 
 
 
414 aa  73.2  0.00000000001  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1167  cell envelope-related protein transcriptional attenuator  29.33 
 
 
417 aa  73.2  0.00000000001  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_010184  BcerKBAB4_5058  membrane-bound transcriptional regulator LytR  26.73 
 
 
304 aa  73.2  0.00000000001  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_3796  membrane-bound transcriptional regulator LytR  26.73 
 
 
302 aa  72.8  0.00000000001  Bacillus cytotoxicus NVH 391-98  Bacteria  hitchhiker  0.0000323774  n/a   
 
 
-
 
NC_013205  Aaci_1875  cell envelope-related transcriptional attenuator  26.77 
 
 
344 aa  73.2  0.00000000001  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_7119  cell envelope-related transcriptional attenuator  27.41 
 
 
382 aa  73.2  0.00000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_1876  cell envelope-related transcriptional attenuator  26.87 
 
 
455 aa  72.4  0.00000000002  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.000275813  normal 
 
 
-
 
NC_013522  Taci_0893  cell envelope-related transcriptional attenuator  29.73 
 
 
453 aa  72.4  0.00000000002  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  0.301121  n/a   
 
 
-
 
NC_013235  Namu_4529  cell envelope-related transcriptional attenuator  30.54 
 
 
365 aa  71.6  0.00000000003  Nakamurella multipartita DSM 44233  Bacteria  normal  0.25457  normal 
 
 
-
 
NC_013595  Sros_0120  Transcriptional regulator-like protein  29.3 
 
 
326 aa  71.2  0.00000000003  Streptosporangium roseum DSM 43021  Bacteria  normal  0.224299  normal 
 
 
-
 
NC_008346  Swol_1921  cell envelope-related transcriptional attenuator  24.47 
 
 
406 aa  71.6  0.00000000003  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.116318  n/a   
 
 
-
 
NC_011658  BCAH187_A5436  membrane-bound transcriptional regulator LytR  25.33 
 
 
302 aa  71.2  0.00000000004  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_0287  cell envelope-related transcriptional attenuator  27.35 
 
 
412 aa  71.2  0.00000000004  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_1864  cell envelope-related transcriptional attenuator  25.87 
 
 
391 aa  70.9  0.00000000005  Jonesia denitrificans DSM 20603  Bacteria  normal  0.383316  normal  0.036217 
 
 
-
 
NC_009921  Franean1_1248  cell envelope-related transcriptional attenuator  25.66 
 
 
512 aa  70.9  0.00000000005  Frankia sp. EAN1pec  Bacteria  normal  0.375848  normal  0.0192244 
 
 
-
 
NC_006274  BCZK3295  transcriptional regulator LytR, attenuator for lytABC and lytR expression  22.78 
 
 
345 aa  70.9  0.00000000005  Bacillus cereus E33L  Bacteria  normal  0.189328  n/a   
 
 
-
 
NC_007777  Francci3_0712  cell envelope-related transcriptional attenuator  27.24 
 
 
573 aa  70.9  0.00000000005  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1166  cell envelope-related protein transcriptional attenuator  27.17 
 
 
395 aa  70.5  0.00000000006  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_0784  cell envelope-related transcriptional attenuator  27.86 
 
 
400 aa  70.5  0.00000000006  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_0125  putative transcriptional regulator  24.9 
 
 
380 aa  70.1  0.00000000007  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  hitchhiker  0.00440963  n/a   
 
 
-
 
NC_008527  LACR_0489  transcription regulator  24.67 
 
 
450 aa  70.5  0.00000000007  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_0961  cell envelope-related function transcriptional attenuator  24.47 
 
 
337 aa  70.1  0.00000000009  Synechococcus elongatus PCC 7942  Bacteria  normal  0.472241  normal 
 
 
-
 
NC_013595  Sros_1363  Transcriptional regulator-like protein  24.1 
 
 
530 aa  70.1  0.00000000009  Streptosporangium roseum DSM 43021  Bacteria  normal  0.640186  normal 
 
 
-
 
NC_005957  BT9727_3347  transcriptional regulator LytR, attenuator for lytABC and lytR expression  22.36 
 
 
345 aa  69.7  0.0000000001  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.000000255205  n/a   
 
 
-
 
NC_009972  Haur_1198  cell envelope-related transcriptional attenuator  26.63 
 
 
585 aa  69.7  0.0000000001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0046  cell envelope-related transcriptional attenuator  28.89 
 
 
320 aa  69.7  0.0000000001  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_30000  cell envelope-related function transcriptional attenuator common domain  29.21 
 
 
395 aa  69.7  0.0000000001  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_008530  LGAS_1157  transcriptional regulator  28.09 
 
 
334 aa  69.7  0.0000000001  Lactobacillus gasseri ATCC 33323  Bacteria  unclonable  0.000000000000266671  hitchhiker  6.72858e-19 
 
 
-
 
NC_009513  Lreu_1057  cell envelope-related transcriptional attenuator  30 
 
 
333 aa  69.3  0.0000000001  Lactobacillus reuteri DSM 20016  Bacteria  normal  0.0371332  n/a   
 
 
-
 
NC_011772  BCG9842_B5640  transcription antiterminator, LytR family  26.46 
 
 
372 aa  68.9  0.0000000002  Bacillus cereus G9842  Bacteria  normal  hitchhiker  0.00000000000247251 
 
 
-
 
NC_005945  BAS3381  LytR family transcription antiterminator  22.78 
 
 
345 aa  68.2  0.0000000003  Bacillus anthracis str. Sterne  Bacteria  normal  0.288134  n/a   
 
 
-
 
NC_005945  BAS5115  membrane-bound transcriptional regulator LytR  26.89 
 
 
303 aa  68.2  0.0000000003  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_3647  LytR family transcription antiterminator  22.78 
 
 
345 aa  68.2  0.0000000003  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0513784  n/a   
 
 
-
 
NC_007530  GBAA_5506  membrane-bound transcriptional regulator LytR  26.89 
 
 
303 aa  68.2  0.0000000003  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.00691653  n/a   
 
 
-
 
NC_011725  BCB4264_A5319  transcription antiterminator, LytR family  26.46 
 
 
374 aa  68.2  0.0000000003  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_009513  Lreu_1352  cell envelope-related transcriptional attenuator  24.28 
 
 
488 aa  68.2  0.0000000003  Lactobacillus reuteri DSM 20016  Bacteria  hitchhiker  0.00278352  n/a   
 
 
-
 
NC_011773  BCAH820_3598  transcription antiterminator, LytR family  22.78 
 
 
345 aa  67.8  0.0000000004  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.000000000000156827 
 
 
-
 
NC_011899  Hore_13390  cell envelope-related transcriptional attenuator  24.45 
 
 
405 aa  67.8  0.0000000004  Halothermothrix orenii H 168  Bacteria  normal  0.557039  n/a   
 
 
-
 
NC_009523  RoseRS_0249  cell envelope-related transcriptional attenuator  26.27 
 
 
461 aa  68.2  0.0000000004  Roseiflexus sp. RS-1  Bacteria  normal  0.176246  normal  0.0400211 
 
 
-
 
NC_014165  Tbis_3514  cell envelope-related transcriptional attenuator  26.87 
 
 
468 aa  67.8  0.0000000004  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_1714  cell envelope-related transcriptional attenuator  28 
 
 
528 aa  68.2  0.0000000004  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.603952 
 
 
-
 
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