7 homologs were found in PanDaTox collection
for query gene Nham_4443 on replicon NC_007960
Organism: Nitrobacter hamburgensis X14



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007960  Nham_4443  conjugal transfer protein  100 
 
 
239 aa  459  9.999999999999999e-129  Nitrobacter hamburgensis X14  Bacteria  normal  0.228705  n/a   
 
 
-
 
NC_011986  Avi_9818  hypothetical protein  43.52 
 
 
232 aa  179  4.999999999999999e-44  Agrobacterium vitis S4  Bacteria  n/a    n/a   
 
 
-
 
NC_009622  Smed_6403  conjugal transfer protein  42.24 
 
 
233 aa  172  5e-42  Sinorhizobium medicae WSM419  Bacteria  normal  0.190169  normal 
 
 
-
 
NC_009669  Oant_4560  conjugal transfer protein  43.06 
 
 
240 aa  167  1e-40  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.516088  n/a   
 
 
-
 
NC_008242  Meso_4175  conjugal transfer protein  39.3 
 
 
231 aa  165  5.9999999999999996e-40  Chelativorans sp. BNC1  Bacteria  normal  0.0769279  n/a   
 
 
-
 
NC_011370  Rleg2_6208  conjugal transfer protein  41.21 
 
 
263 aa  136  3.0000000000000003e-31  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.726162  normal  0.173405 
 
 
-
 
NC_012792  Vapar_5817  type IV secretion system family protein  28.24 
 
 
244 aa  44.3  0.002  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
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