More than 300 homologs were found in PanDaTox collection
for query gene Nham_1209 on replicon NC_007964
Organism: Nitrobacter hamburgensis X14



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007964  Nham_1209  binding-protein-dependent transport systems inner membrane component  100 
 
 
284 aa  569  1e-161  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_0008  binding-protein-dependent transport systems inner membrane component  72.18 
 
 
295 aa  399  9.999999999999999e-111  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_3122  ABC sugar transporter, inner membrane subunit  63.14 
 
 
281 aa  376  1e-103  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_1664  binding-protein-dependent transport systems inner membrane component  63.04 
 
 
281 aa  377  1e-103  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.150444  normal 
 
 
-
 
NC_011891  A2cp1_3316  binding-protein-dependent transport systems inner membrane component  65.9 
 
 
281 aa  375  1e-103  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_3230  binding-protein-dependent transport systems inner membrane component  65.52 
 
 
281 aa  373  1e-102  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1260  binding-protein-dependent transport systems inner membrane component  49.24 
 
 
291 aa  252  6e-66  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_011366  Rleg2_5715  binding-protein-dependent transport systems inner membrane component  46.74 
 
 
311 aa  241  7e-63  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.578248 
 
 
-
 
NC_007925  RPC_3644  binding-protein-dependent transport systems inner membrane component  46.51 
 
 
306 aa  241  1e-62  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.433095 
 
 
-
 
NC_009620  Smed_4330  binding-protein-dependent transport systems inner membrane component  47.89 
 
 
299 aa  240  2e-62  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0255144 
 
 
-
 
NC_007958  RPD_3320  binding-protein-dependent transport systems inner membrane component  46.04 
 
 
306 aa  238  6.999999999999999e-62  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.516891  normal 
 
 
-
 
NC_012848  Rleg_5335  binding-protein-dependent transport systems inner membrane component  46.36 
 
 
299 aa  237  1e-61  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.494114 
 
 
-
 
NC_007778  RPB_2099  binding-protein dependent transport system inner membrane protein  45.66 
 
 
307 aa  236  3e-61  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.642563  decreased coverage  0.0000998416 
 
 
-
 
NC_011004  Rpal_3958  binding-protein-dependent transport systems inner membrane component  46.48 
 
 
308 aa  236  3e-61  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.809225  n/a   
 
 
-
 
NC_009485  BBta_3556  putative ABC transporter permease protein  46.9 
 
 
302 aa  236  4e-61  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1415  binding-protein-dependent transport systems inner membrane component  45.28 
 
 
292 aa  233  4.0000000000000004e-60  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0820  binding-protein-dependent transport systems inner membrane component  46.12 
 
 
291 aa  231  1e-59  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_2890  binding-protein-dependent transport systems inner membrane component  44.91 
 
 
312 aa  230  2e-59  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.908761  normal  0.323454 
 
 
-
 
NC_007778  RPB_2548  binding-protein dependent transport system inner membrane protein  37.28 
 
 
304 aa  198  9e-50  Rhodopseudomonas palustris HaA2  Bacteria  decreased coverage  0.00362276  normal 
 
 
-
 
NC_009485  BBta_4119  ABC transporter permease protein  36.67 
 
 
303 aa  196  3e-49  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0396939  normal  0.542053 
 
 
-
 
NC_007958  RPD_2908  binding-protein-dependent transport systems inner membrane component  37.28 
 
 
303 aa  196  5.000000000000001e-49  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.265009  normal  0.0499964 
 
 
-
 
NC_009720  Xaut_0498  binding-protein-dependent transport systems inner membrane component  50 
 
 
219 aa  177  2e-43  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_009620  Smed_3589  binding-protein-dependent transport systems inner membrane component  34.75 
 
 
276 aa  154  1e-36  Sinorhizobium medicae WSM419  Bacteria  normal  0.577285  normal 
 
 
-
 
NC_012669  Bcav_1682  binding-protein-dependent transport systems inner membrane component  34.89 
 
 
275 aa  153  2.9999999999999998e-36  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.299262  normal 
 
 
-
 
NC_008786  Veis_1881  binding-protein-dependent transport systems inner membrane component  31.54 
 
 
277 aa  151  1e-35  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.31192  normal  0.345507 
 
 
-
 
NC_009667  Oant_0352  binding-protein-dependent transport systems inner membrane component  34.3 
 
 
277 aa  145  7.0000000000000006e-34  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_1103  binding-protein-dependent transporter inner membrane component  33.57 
 
 
283 aa  144  2e-33  Thermobispora bispora DSM 43833  Bacteria  normal  0.216355  normal  0.105298 
 
 
-
 
NC_014165  Tbis_1884  binding-protein-dependent transporter inner membrane component  30.2 
 
 
278 aa  143  3e-33  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.683331 
 
 
-
 
NC_013946  Mrub_2088  binding-protein-dependent transport systems inner membrane component  32.73 
 
 
282 aa  143  4e-33  Meiothermus ruber DSM 1279  Bacteria  hitchhiker  0.00655693  normal  0.897951 
 
 
-
 
NC_007802  Jann_3555  binding-protein-dependent transport systems inner membrane component  33.07 
 
 
279 aa  141  9.999999999999999e-33  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_011899  Hore_00800  binding-protein-dependent transport systems inner membrane component  33.19 
 
 
280 aa  141  9.999999999999999e-33  Halothermothrix orenii H 168  Bacteria  normal  0.303025  n/a   
 
 
-
 
NC_007908  Rfer_0952  binding-protein-dependent transport systems inner membrane component  33.73 
 
 
271 aa  140  1.9999999999999998e-32  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_2192  putative sugar ABC transporter, permease protein  32.62 
 
 
283 aa  140  3e-32  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_2422  binding-protein-dependent transport systems inner membrane component  31.77 
 
 
277 aa  138  8.999999999999999e-32  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.161716 
 
 
-
 
NC_008148  Rxyl_0067  binding-protein-dependent transport systems inner membrane component  31.56 
 
 
282 aa  137  1e-31  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008243  Meso_4515  binding-protein-dependent transport systems inner membrane component  31.3 
 
 
275 aa  137  3.0000000000000003e-31  Chelativorans sp. BNC1  Bacteria  normal  0.275064  n/a   
 
 
-
 
NC_012848  Rleg_5211  binding-protein-dependent transport systems inner membrane component  30.62 
 
 
281 aa  135  8e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.610418 
 
 
-
 
NC_013521  Sked_02950  carbohydrate ABC transporter membrane protein  28.93 
 
 
297 aa  135  9.999999999999999e-31  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_012848  Rleg_4865  binding-protein-dependent transport systems inner membrane component  32.87 
 
 
296 aa  135  9.999999999999999e-31  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.174421 
 
 
-
 
NC_008541  Arth_0050  binding-protein-dependent transport systems inner membrane component  30.86 
 
 
305 aa  134  1.9999999999999998e-30  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_2899  binding-protein-dependent transport systems inner membrane component  31.09 
 
 
316 aa  133  3.9999999999999996e-30  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013159  Svir_11600  carbohydrate ABC transporter membrane protein  30.59 
 
 
283 aa  133  3.9999999999999996e-30  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_5474  binding-protein-dependent transport systems inner membrane component  29.84 
 
 
280 aa  133  3.9999999999999996e-30  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.9066  normal  0.435889 
 
 
-
 
NC_011369  Rleg2_3667  binding-protein-dependent transport systems inner membrane component  32.52 
 
 
296 aa  133  3.9999999999999996e-30  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_3685  binding-protein-dependent transport systems inner membrane component  32.29 
 
 
299 aa  132  5e-30  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_012858  Rleg_6763  binding-protein-dependent transport systems inner membrane component  30.07 
 
 
276 aa  132  6e-30  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.18605  normal 
 
 
-
 
NC_011366  Rleg2_5850  binding-protein-dependent transport systems inner membrane component  30.11 
 
 
276 aa  132  6e-30  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.590535  normal 
 
 
-
 
NC_009953  Sare_0749  binding-protein-dependent transport systems inner membrane component  29.92 
 
 
306 aa  132  7.999999999999999e-30  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00175385 
 
 
-
 
NC_013131  Caci_2110  binding-protein-dependent transport systems inner membrane component  28.32 
 
 
316 aa  132  9e-30  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.523457 
 
 
-
 
NC_012669  Bcav_3773  binding-protein-dependent transport systems inner membrane component  31.67 
 
 
279 aa  131  1.0000000000000001e-29  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.468941  normal 
 
 
-
 
NC_010003  Pmob_0307  binding-protein-dependent transport systems inner membrane component  31 
 
 
274 aa  131  1.0000000000000001e-29  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_3341  putative sugar ABC transporter, permease protein  28.63 
 
 
292 aa  131  2.0000000000000002e-29  Streptosporangium roseum DSM 43021  Bacteria  normal  0.22127  normal  0.118781 
 
 
-
 
NC_013526  Tter_2701  binding-protein-dependent transport systems inner membrane component  29.39 
 
 
275 aa  130  3e-29  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.0563997  n/a   
 
 
-
 
NC_009380  Strop_0805  binding-protein-dependent transport systems inner membrane component  30.31 
 
 
311 aa  130  3e-29  Salinispora tropica CNB-440  Bacteria  normal  0.736814  normal 
 
 
-
 
NC_009436  Ent638_2162  binding-protein-dependent transport systems inner membrane component  27.66 
 
 
280 aa  130  3e-29  Enterobacter sp. 638  Bacteria  normal  normal  0.250115 
 
 
-
 
NC_013093  Amir_0401  binding-protein-dependent transport systems inner membrane component  32.37 
 
 
273 aa  129  5.0000000000000004e-29  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_1418  binding-protein-dependent transport systems inner membrane component  35.41 
 
 
276 aa  129  6e-29  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_5740  binding-protein-dependent transport systems inner membrane component  32.12 
 
 
289 aa  129  7.000000000000001e-29  Streptosporangium roseum DSM 43021  Bacteria  normal  0.872391  normal  0.176709 
 
 
-
 
NC_009718  Fnod_0448  binding-protein-dependent transport systems inner membrane component  29.39 
 
 
281 aa  129  7.000000000000001e-29  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_0029  binding-protein-dependent transport systems inner membrane component  28.47 
 
 
283 aa  129  8.000000000000001e-29  Petrotoga mobilis SJ95  Bacteria  unclonable  0.0000000511748  n/a   
 
 
-
 
NC_010003  Pmob_0475  binding-protein-dependent transport systems inner membrane component  27.44 
 
 
276 aa  128  1.0000000000000001e-28  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_0395  binding-protein-dependent transport systems inner membrane component  29.47 
 
 
277 aa  128  1.0000000000000001e-28  Thermoanaerobacter sp. X514  Bacteria  normal  0.230637  n/a   
 
 
-
 
NC_013517  Sterm_1526  binding-protein-dependent transport systems inner membrane component  30.15 
 
 
283 aa  128  1.0000000000000001e-28  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_1285  binding-protein-dependent transport systems inner membrane component  29 
 
 
404 aa  127  2.0000000000000002e-28  Jannaschia sp. CCS1  Bacteria  normal  0.1795  normal  0.885594 
 
 
-
 
NC_011899  Hore_04600  binding-protein-dependent transport systems inner membrane component  28.36 
 
 
277 aa  127  2.0000000000000002e-28  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_012853  Rleg_5696  binding-protein-dependent transport systems inner membrane component  29.75 
 
 
283 aa  127  2.0000000000000002e-28  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.697019  normal  0.0828938 
 
 
-
 
NC_010498  EcSMS35_1810  putative sugar ABC transporter, permease protein  28.84 
 
 
280 aa  127  2.0000000000000002e-28  Escherichia coli SMS-3-5  Bacteria  normal  0.817708  normal 
 
 
-
 
NC_009832  Spro_2524  binding-protein-dependent transport systems inner membrane component  32.56 
 
 
281 aa  127  2.0000000000000002e-28  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0399  binding-protein-dependent transport systems inner membrane component  29.47 
 
 
286 aa  126  3e-28  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009616  Tmel_1818  binding-protein-dependent transport systems inner membrane component  29.89 
 
 
279 aa  126  4.0000000000000003e-28  Thermosipho melanesiensis BI429  Bacteria  normal  0.675174  n/a   
 
 
-
 
NC_011729  PCC7424_1897  binding-protein-dependent transport systems inner membrane component  28.11 
 
 
291 aa  126  4.0000000000000003e-28  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  1.3984100000000001e-18 
 
 
-
 
NC_007947  Mfla_2350  binding-protein-dependent transport systems inner membrane component  33.98 
 
 
272 aa  126  4.0000000000000003e-28  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.531176 
 
 
-
 
NC_008346  Swol_0403  putative integral membrane transport protein  32.05 
 
 
279 aa  125  8.000000000000001e-28  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_0549  ABC-type sugar / sn-glycerol-3-phosphate transport system permease protein ugpE  30.86 
 
 
272 aa  125  8.000000000000001e-28  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_013202  Hmuk_0942  binding-protein-dependent transport systems inner membrane component  26.69 
 
 
280 aa  124  1e-27  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal  0.41482 
 
 
-
 
NC_007802  Jann_4088  binding-protein-dependent transport systems inner membrane component  31.14 
 
 
275 aa  124  1e-27  Jannaschia sp. CCS1  Bacteria  normal  normal  0.350213 
 
 
-
 
NC_011353  ECH74115_1957  putative sugar ABC transporter, permease protein  28.46 
 
 
280 aa  124  1e-27  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.605299  normal  0.820662 
 
 
-
 
NC_008254  Meso_3773  binding-protein-dependent transport systems inner membrane component  30.94 
 
 
307 aa  124  1e-27  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_3058  binding-protein-dependent transport systems inner membrane component  30.71 
 
 
286 aa  124  2e-27  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_3142  sugar ABC transporter  30.77 
 
 
275 aa  124  2e-27  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.367291  normal 
 
 
-
 
NC_013093  Amir_0350  binding-protein-dependent transport systems inner membrane component  30.21 
 
 
297 aa  124  2e-27  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0023  binding-protein-dependent transport systems inner membrane component  30.11 
 
 
277 aa  123  3e-27  Marinomonas sp. MWYL1  Bacteria  normal  0.275556  normal  0.424969 
 
 
-
 
NC_011894  Mnod_5669  binding-protein-dependent transport systems inner membrane component  30.35 
 
 
275 aa  123  3e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_01289  predicted sugar transporter subunit: membrane component of ABC superfamily  28.46 
 
 
280 aa  123  4e-27  Escherichia coli BL21(DE3)  Bacteria  normal  0.553016  n/a   
 
 
-
 
CP001637  EcDH1_2334  binding-protein-dependent transport systems inner membrane component  28.46 
 
 
280 aa  123  4e-27  Escherichia coli DH1  Bacteria  normal  0.240108  n/a   
 
 
-
 
NC_009800  EcHS_A1427  putative sugar ABC transporter, permease protein  28.46 
 
 
280 aa  123  4e-27  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_01300  hypothetical protein  28.46 
 
 
280 aa  123  4e-27  Escherichia coli BL21  Bacteria  normal  0.534807  n/a   
 
 
-
 
NC_007484  Noc_0280  ABC transporter, inner membrane subunit  29.03 
 
 
280 aa  123  4e-27  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.787211  n/a   
 
 
-
 
NC_010468  EcolC_2313  binding-protein-dependent transport systems inner membrane component  28.46 
 
 
280 aa  123  4e-27  Escherichia coli ATCC 8739  Bacteria  normal  0.676844  normal 
 
 
-
 
NC_007963  Csal_2612  binding-protein-dependent transport systems inner membrane component  32.94 
 
 
276 aa  123  4e-27  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_1522  putative sugar ABC transporter, permease protein  28.46 
 
 
280 aa  123  4e-27  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_25430  carbohydrate ABC transporter membrane protein  31.52 
 
 
275 aa  123  4e-27  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0542318  n/a   
 
 
-
 
NC_009668  Oant_2942  binding-protein-dependent transport systems inner membrane component  32.95 
 
 
275 aa  122  5e-27  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.667129  n/a   
 
 
-
 
NC_008528  OEOE_0255  ABC-type maltose transport system, permease component  30.08 
 
 
276 aa  122  5e-27  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0956  binding-protein-dependent transport systems inner membrane component  27.14 
 
 
278 aa  122  6e-27  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0972  binding-protein-dependent transport systems inner membrane component  27.14 
 
 
278 aa  122  6e-27  Thermotoga sp. RQ2  Bacteria  hitchhiker  0.00136246  n/a   
 
 
-
 
NC_008254  Meso_2303  binding-protein-dependent transport systems inner membrane component  29.57 
 
 
275 aa  122  7e-27  Chelativorans sp. BNC1  Bacteria  normal  0.313337  n/a   
 
 
-
 
NC_009668  Oant_3897  binding-protein-dependent transport systems inner membrane component  28.57 
 
 
275 aa  122  7e-27  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.965768  n/a   
 
 
-
 
NC_011145  AnaeK_4265  binding-protein-dependent transport systems inner membrane component  29.21 
 
 
293 aa  122  9e-27  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_4402  binding-protein-dependent transport systems inner membrane component  31.89 
 
 
288 aa  122  9e-27  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
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