201 homologs were found in PanDaTox collection
for query gene Nham_0579 on replicon NC_007964
Organism: Nitrobacter hamburgensis X14



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007964  Nham_0579  XRE family plasmid maintenance system antidote protein  100 
 
 
101 aa  203  6e-52  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_4027  XRE family plasmid maintenance system antidote protein  96.04 
 
 
101 aa  196  7e-50  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_4756  XRE family plasmid maintenance system antidote protein  71 
 
 
100 aa  149  8.999999999999999e-36  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A3068  plasmid maintenance system antidote protein  55.06 
 
 
95 aa  110  1.0000000000000001e-23  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.959159  n/a   
 
 
-
 
NC_007951  Bxe_A0921  hypothetical protein  53.61 
 
 
151 aa  99.8  1e-20  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010117  COXBURSA331_A1669  addiction module antidote protein  52.87 
 
 
101 aa  98.2  3e-20  Coxiella burnetii RSA 331  Bacteria  normal  0.179147  n/a   
 
 
-
 
NC_009727  CBUD_0533  virulence-associated protein I  52.87 
 
 
103 aa  98.6  3e-20  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  0.888429  n/a   
 
 
-
 
NC_010681  Bphyt_3070  XRE family plasmid maintenance system antidote protein  53.19 
 
 
151 aa  96.3  1e-19  Burkholderia phytofirmans PsJN  Bacteria  normal  0.314371  normal 
 
 
-
 
NC_010725  Mpop_2927  XRE family plasmid maintenance system antidote protein  50 
 
 
97 aa  93.6  7e-19  Methylobacterium populi BJ001  Bacteria  normal  0.225345  normal 
 
 
-
 
NC_007413  Ava_3243  plasmid maintenance system antidote protein  50 
 
 
102 aa  91.7  3e-18  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0211861  normal 
 
 
-
 
NC_013174  Jden_0768  XRE family plasmid maintenance system antidote protein  51.76 
 
 
100 aa  91.3  4e-18  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_3198  XRE family plasmid maintenance system antidote protein  47.73 
 
 
104 aa  91.3  4e-18  Marinobacter aquaeolei VT8  Bacteria  normal  0.562378  n/a   
 
 
-
 
NC_008576  Mmc1_2896  XRE family plasmid maintenance system antidote protein  49.4 
 
 
95 aa  90.1  9e-18  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.543418 
 
 
-
 
NC_011901  Tgr7_0043  XRE family plasmid maintenance system antidote protein  52.38 
 
 
99 aa  89.7  1e-17  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_2972  XRE family plasmid maintenance system antidote protein  48.81 
 
 
101 aa  89  2e-17  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_0019  XRE family plasmid maintenance system antidote protein  49.38 
 
 
98 aa  89.4  2e-17  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.191318  normal  0.0141037 
 
 
-
 
NC_007517  Gmet_3001  XRE family plasmid maintenance system antidote protein  54.55 
 
 
100 aa  88.6  3e-17  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.770477 
 
 
-
 
NC_011004  Rpal_2764  XRE family plasmid maintenance system antidote protein  49.41 
 
 
95 aa  87.8  5e-17  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.374165  n/a   
 
 
-
 
NC_009943  Dole_2564  XRE family plasmid maintenance system antidote protein  46.94 
 
 
116 aa  86.7  9e-17  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.63579  n/a   
 
 
-
 
NC_010002  Daci_1211  XRE family plasmid maintenance system antidote protein  53.09 
 
 
103 aa  86.3  1e-16  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_2829  XRE family plasmid maintenance system antidote protein  48.24 
 
 
110 aa  86.3  1e-16  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.0896969  normal 
 
 
-
 
NC_011769  DvMF_1669  XRE family plasmid maintenance system antidote protein  48.89 
 
 
101 aa  85.5  2e-16  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_008463  PA14_61840  putative virulence-associated protein  51.76 
 
 
101 aa  85.9  2e-16  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  hitchhiker  0.000756673  hitchhiker  0.00808433 
 
 
-
 
NC_009483  Gura_1216  XRE family plasmid maintenance system antidote protein  53.25 
 
 
101 aa  85.9  2e-16  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_5378  addiction module antidote protein  51.76 
 
 
101 aa  85.5  2e-16  Pseudomonas aeruginosa PA7  Bacteria  normal  0.369538  n/a   
 
 
-
 
NC_007925  RPC_3187  XRE family plasmid maintenance system antidote protein  46.25 
 
 
94 aa  84.3  5e-16  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.0487579  normal 
 
 
-
 
NC_007404  Tbd_0672  plasmid maintenance system antidote protein  47.73 
 
 
171 aa  83.2  0.000000000000001  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.15068  normal  0.669698 
 
 
-
 
NC_013530  Xcel_0947  XRE family plasmid maintenance system antidote protein  51.85 
 
 
106 aa  82.8  0.000000000000001  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_0642  hypothetical protein  53.42 
 
 
96 aa  82.4  0.000000000000002  Cytophaga hutchinsonii ATCC 33406  Bacteria  decreased coverage  0.000000446232  normal  0.460246 
 
 
-
 
NC_013174  Jden_0750  XRE family plasmid maintenance system antidote protein  52.05 
 
 
117 aa  81.3  0.000000000000004  Jonesia denitrificans DSM 20603  Bacteria  normal  0.236771  normal 
 
 
-
 
NC_012560  Avin_27690  plasmid maintenance system antidote protein  49.38 
 
 
99 aa  80.9  0.000000000000005  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_3424  XRE family plasmid maintenance system antidote protein  43.48 
 
 
98 aa  80.5  0.000000000000007  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_011060  Ppha_1377  XRE family plasmid maintenance system antidote protein  50.7 
 
 
99 aa  80.1  0.000000000000009  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_2786  XRE family plasmid maintenance system antidote protein  44.19 
 
 
106 aa  80.1  0.00000000000001  Thioalkalivibrio sp. HL-EbGR7  Bacteria  unclonable  0.000000094081  n/a   
 
 
-
 
NC_007643  Rru_A1535  plasmid maintenance system antidote protein  48.19 
 
 
123 aa  79.7  0.00000000000001  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0393222  n/a   
 
 
-
 
NC_013037  Dfer_4918  XRE family plasmid maintenance system antidote protein  43.53 
 
 
99 aa  80.1  0.00000000000001  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.128758 
 
 
-
 
NC_007643  Rru_A2019  plasmid maintenance system antidote protein  42.68 
 
 
99 aa  79.3  0.00000000000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_3236  XRE family plasmid maintenance system antidote protein  46.25 
 
 
94 aa  79.3  0.00000000000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.390775  normal 
 
 
-
 
NC_011666  Msil_2106  XRE family plasmid maintenance system antidote protein  45.74 
 
 
93 aa  79.3  0.00000000000002  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_008786  Veis_4131  XRE family plasmid maintenance system antidote protein  46.99 
 
 
102 aa  79.3  0.00000000000002  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0937778  normal  0.0702268 
 
 
-
 
NC_007484  Noc_0417  XRE family transcriptional regulator  50.67 
 
 
104 aa  77.8  0.00000000000005  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_0224  plasmid maintenance system antidote protein, XRE family  42.86 
 
 
99 aa  77.4  0.00000000000006  Thioalkalivibrio sp. K90mix  Bacteria  normal  0.657872  normal  0.19652 
 
 
-
 
NC_011365  Gdia_2693  plasmid maintenance system antidote protein, XRE family  45.45 
 
 
92 aa  77  0.00000000000009  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_006369  lpl1093  hypothetical protein  45.88 
 
 
107 aa  76.3  0.0000000000001  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_010511  M446_6218  XRE family plasmid maintenance system antidote protein  50 
 
 
80 aa  76.3  0.0000000000001  Methylobacterium sp. 4-46  Bacteria  normal  0.119122  normal 
 
 
-
 
NC_011901  Tgr7_1105  XRE family plasmid maintenance system antidote protein  43.18 
 
 
105 aa  75.9  0.0000000000002  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.912318  n/a   
 
 
-
 
NC_010717  PXO_03903  addiction module antidote protein, HigA family  45.56 
 
 
96 aa  75.9  0.0000000000002  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.433469  n/a   
 
 
-
 
NC_010338  Caul_3225  XRE family plasmid maintenance system antidote protein  42.39 
 
 
106 aa  75.9  0.0000000000002  Caulobacter sp. K31  Bacteria  normal  normal  0.114466 
 
 
-
 
NC_010803  Clim_1368  XRE family plasmid maintenance system antidote protein  41.67 
 
 
102 aa  75.1  0.0000000000003  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_2894  addiction module antidote protein, HigA family  39.13 
 
 
119 aa  75.5  0.0000000000003  Gordonia bronchialis DSM 43247  Bacteria  normal  0.285023  n/a   
 
 
-
 
NC_010517  Mrad2831_6421  XRE family plasmid maintenance system antidote protein  49.3 
 
 
78 aa  74.3  0.0000000000005  Methylobacterium radiotolerans JCM 2831  Bacteria  n/a    normal  0.953679 
 
 
-
 
NC_010513  Xfasm12_1142  XRE family plasmid maintenance system antidote protein  42.53 
 
 
99 aa  73.9  0.0000000000006  Xylella fastidiosa M12  Bacteria  normal  0.570352  n/a   
 
 
-
 
NC_010513  Xfasm12_0403  XRE family plasmid maintenance system antidote protein  42.53 
 
 
99 aa  73.9  0.0000000000006  Xylella fastidiosa M12  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_1672  XRE family plasmid maintenance system antidote protein  46.67 
 
 
108 aa  73.9  0.0000000000006  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_0608  XRE family plasmid maintenance system antidote protein  42.35 
 
 
98 aa  73.9  0.0000000000007  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2881  XRE family plasmid maintenance system antidote protein  50.65 
 
 
96 aa  73.9  0.0000000000007  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.516447  n/a   
 
 
-
 
NC_007925  RPC_4370  XRE family plasmid maintenance system antidote protein  44.44 
 
 
106 aa  73.2  0.000000000001  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.0372671  normal  0.0360192 
 
 
-
 
NC_011761  AFE_1754  virulence-associated protein, putative  50.7 
 
 
104 aa  72.8  0.000000000001  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.0614542  n/a   
 
 
-
 
NC_011060  Ppha_2031  XRE family plasmid maintenance system antidote protein  45.57 
 
 
106 aa  73.2  0.000000000001  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.65469  n/a   
 
 
-
 
NC_007514  Cag_1487  XRE family plasmid maintenance system antidote protein  38.54 
 
 
103 aa  72.4  0.000000000002  Chlorobium chlorochromatii CaD3  Bacteria  hitchhiker  0.000000000645872  n/a   
 
 
-
 
NC_007964  Nham_2852  XRE family plasmid maintenance system antidote protein  40.23 
 
 
100 aa  72  0.000000000002  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_3616  XRE family plasmid maintenance system antidote protein  35.79 
 
 
100 aa  72.8  0.000000000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.322775  n/a   
 
 
-
 
NC_007778  RPB_4148  XRE family plasmid maintenance system antidote protein  44.87 
 
 
101 aa  71.6  0.000000000003  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.287171  normal 
 
 
-
 
NC_010577  XfasM23_1425  XRE family plasmid maintenance system antidote protein  44.83 
 
 
99 aa  72  0.000000000003  Xylella fastidiosa M23  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_1585  antidote protein, putative  43.53 
 
 
99 aa  71.2  0.000000000005  Pseudomonas putida KT2440  Bacteria  normal  normal  0.315858 
 
 
-
 
NC_011004  Rpal_4828  XRE family plasmid maintenance system antidote protein  44.87 
 
 
101 aa  71.2  0.000000000005  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009943  Dole_1385  XRE family plasmid maintenance system antidote protein  40 
 
 
103 aa  70.9  0.000000000006  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_2763  virulence-associated protein, putative  37.8 
 
 
100 aa  70.5  0.000000000007  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_1407  XRE family plasmid maintenance system antidote protein  40.48 
 
 
103 aa  70.5  0.000000000008  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.117941  n/a   
 
 
-
 
NC_011060  Ppha_1480  XRE family plasmid maintenance system antidote protein  39.29 
 
 
102 aa  69.7  0.00000000001  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.0221448  n/a   
 
 
-
 
NC_007925  RPC_4141  XRE family plasmid maintenance system antidote protein  44.74 
 
 
101 aa  70.1  0.00000000001  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.267642  normal 
 
 
-
 
NC_009512  Pput_4192  XRE family plasmid maintenance system antidote protein  42.35 
 
 
99 aa  70.1  0.00000000001  Pseudomonas putida F1  Bacteria  normal  0.322269  normal 
 
 
-
 
NC_007974  Rmet_4764  plasmid maintenance system antidote protein  41.11 
 
 
115 aa  68.6  0.00000000003  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.559463 
 
 
-
 
NC_008254  Meso_0885  XRE family plasmid maintenance system antidote protein  45.07 
 
 
102 aa  68.6  0.00000000003  Chelativorans sp. BNC1  Bacteria  normal  0.673579  n/a   
 
 
-
 
NC_009671  Oant_4678  XRE family plasmid maintenance system antidote protein  43.24 
 
 
98 aa  68.6  0.00000000003  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.171358  n/a   
 
 
-
 
NC_002967  TDE1610  DNA-binding protein  39.02 
 
 
100 aa  68.2  0.00000000004  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_007514  Cag_1194  XRE family plasmid maintenance system antidote protein  42.5 
 
 
369 aa  67.8  0.00000000005  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A3311  plasmid maintenance system antidote protein  40.48 
 
 
111 aa  67.8  0.00000000005  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_2505  XRE family plasmid maintenance system antidote protein  40.24 
 
 
103 aa  67.8  0.00000000005  Dyadobacter fermentans DSM 18053  Bacteria  hitchhiker  0.0000574166  normal 
 
 
-
 
NC_011146  Gbem_1906  XRE family plasmid maintenance system antidote protein  32.53 
 
 
100 aa  67  0.00000000008  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.0000136892  n/a   
 
 
-
 
NC_009719  Plav_2942  XRE family plasmid maintenance system antidote protein  45.71 
 
 
104 aa  66.6  0.0000000001  Parvibaculum lavamentivorans DS-1  Bacteria  hitchhiker  0.00934275  hitchhiker  0.000711707 
 
 
-
 
NC_009483  Gura_0412  XRE family plasmid maintenance system antidote protein  36.84 
 
 
100 aa  65.9  0.0000000002  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009621  Smed_5479  XRE family plasmid maintenance system antidote protein  35.23 
 
 
99 aa  66.2  0.0000000002  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_0214  virulence-associated protein, putative  44.71 
 
 
101 aa  65.1  0.0000000003  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.756652  n/a   
 
 
-
 
NC_013204  Elen_1062  XRE family plasmid maintenance system antidote protein  38.16 
 
 
102 aa  65.5  0.0000000003  Eggerthella lenta DSM 2243  Bacteria  normal  hitchhiker  0.0000765045 
 
 
-
 
NC_013730  Slin_2499  XRE family plasmid maintenance system antidote protein  42.31 
 
 
101 aa  63.9  0.0000000007  Spirosoma linguale DSM 74  Bacteria  normal  0.0881387  normal  0.214118 
 
 
-
 
NC_011884  Cyan7425_1808  XRE family plasmid maintenance system antidote protein  42.68 
 
 
358 aa  62.4  0.000000002  Cyanothece sp. PCC 7425  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A2823  putative plasmid maintenance system antidote protein  46.38 
 
 
167 aa  62.4  0.000000002  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_3283  XRE family plasmid maintenance system antidote protein  41.33 
 
 
102 aa  62.4  0.000000002  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_011060  Ppha_2447  XRE family plasmid maintenance system antidote protein  39.47 
 
 
128 aa  61.6  0.000000003  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.56382  n/a   
 
 
-
 
NC_009675  Anae109_1543  XRE family plasmid maintenance system antidote protein  42.35 
 
 
118 aa  61.6  0.000000003  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.167279 
 
 
-
 
NC_008639  Cpha266_1951  XRE family plasmid maintenance system antidote protein  41.25 
 
 
368 aa  60.8  0.000000006  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_3935  XRE family plasmid maintenance system antidote protein  37.65 
 
 
123 aa  60.8  0.000000006  Methylobacterium populi BJ001  Bacteria  normal  normal  0.155055 
 
 
-
 
NC_011761  AFE_0089  DNA-binding protein, putative  36.9 
 
 
105 aa  60.5  0.000000007  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.993479  n/a   
 
 
-
 
NC_011206  Lferr_0091  XRE family plasmid maintenance system antidote protein  36.9 
 
 
105 aa  60.5  0.000000007  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_4087  XRE family plasmid maintenance system antidote protein  43.53 
 
 
99 aa  60.5  0.000000008  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_0902  hypothetical protein  31.87 
 
 
199 aa  60.5  0.000000008  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008346  Swol_0483  XRE family plasmid maintenance system antidote protein  36.71 
 
 
350 aa  59.7  0.00000001  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_1982  XRE family plasmid maintenance system antidote protein  42.5 
 
 
116 aa  59.7  0.00000001  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.610111  n/a   
 
 
-
 
NC_011757  Mchl_1125  XRE family plasmid maintenance system antidote protein  34.38 
 
 
119 aa  60.1  0.00000001  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.19415 
 
 
-
 
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