More than 300 homologs were found in PanDaTox collection
for query gene Ndas_5374 on replicon NC_014211
Organism: Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_014211  Ndas_5374  two component transcriptional regulator, winged helix family  100 
 
 
218 aa  433  1e-121  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_25330  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  54.63 
 
 
214 aa  224  6e-58  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_1627  two component transcriptional regulator, winged helix family  52.29 
 
 
218 aa  216  2e-55  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.393195 
 
 
-
 
NC_013131  Caci_1032  two component transcriptional regulator, winged helix family  53.92 
 
 
218 aa  214  5.9999999999999996e-55  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.015145 
 
 
-
 
NC_014211  Ndas_4944  two component transcriptional regulator, winged helix family  52.07 
 
 
224 aa  213  2.9999999999999995e-54  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_5939  two component transcriptional regulator, winged helix family  50.46 
 
 
218 aa  212  3.9999999999999995e-54  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_1694  two component transcriptional regulator, winged helix family  51.61 
 
 
217 aa  212  3.9999999999999995e-54  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00296965  n/a   
 
 
-
 
NC_013131  Caci_8629  two component transcriptional regulator, winged helix family  53 
 
 
218 aa  211  4.9999999999999996e-54  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0375098  normal 
 
 
-
 
NC_014165  Tbis_2298  winged helix family two component transcriptional regulator  51.61 
 
 
217 aa  207  9e-53  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.359979 
 
 
-
 
NC_007333  Tfu_1941  response regulator receiver  49.77 
 
 
217 aa  207  1e-52  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0304  response regulator receiver protein  50.92 
 
 
218 aa  205  3e-52  Streptosporangium roseum DSM 43021  Bacteria  normal  0.818258  normal 
 
 
-
 
NC_009921  Franean1_6946  two component transcriptional regulator  48.39 
 
 
219 aa  202  5e-51  Frankia sp. EAN1pec  Bacteria  normal  normal  0.383627 
 
 
-
 
NC_008726  Mvan_3839  two component transcriptional regulator  51.22 
 
 
214 aa  200  9.999999999999999e-51  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_2885  two component transcriptional regulator, winged helix family  48.85 
 
 
217 aa  199  1.9999999999999998e-50  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.56822 
 
 
-
 
NC_014210  Ndas_4784  two component transcriptional regulator, winged helix family  50 
 
 
218 aa  199  3.9999999999999996e-50  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0755771  normal 
 
 
-
 
NC_013595  Sros_0839  response regulator receiver protein  52.53 
 
 
217 aa  197  9e-50  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_6773  response regulator receiver protein  48.84 
 
 
215 aa  196  2.0000000000000003e-49  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_6645  two component transcriptional regulator, winged helix family  50.23 
 
 
217 aa  195  6e-49  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.129361 
 
 
-
 
NC_013739  Cwoe_0520  two component transcriptional regulator, winged helix family  47 
 
 
226 aa  194  6e-49  Conexibacter woesei DSM 14684  Bacteria  normal  0.896215  normal 
 
 
-
 
NC_013947  Snas_0152  two component transcriptional regulator, winged helix family  49.77 
 
 
218 aa  193  2e-48  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.541846 
 
 
-
 
NC_009380  Strop_1496  response regulator receiver  48.85 
 
 
222 aa  192  4e-48  Salinispora tropica CNB-440  Bacteria  normal  0.23196  normal  0.62159 
 
 
-
 
NC_009953  Sare_1458  two component transcriptional regulator  48.39 
 
 
222 aa  191  1e-47  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00630531 
 
 
-
 
NC_009921  Franean1_0082  two component transcriptional regulator  48.17 
 
 
219 aa  190  2e-47  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_3363  two component transcriptional regulator, winged helix family  46.33 
 
 
218 aa  184  8e-46  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.0369165 
 
 
-
 
NC_013521  Sked_26840  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  47.93 
 
 
227 aa  184  1.0000000000000001e-45  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.871857 
 
 
-
 
NC_013947  Snas_4521  two component transcriptional regulator, winged helix family  44.7 
 
 
223 aa  184  1.0000000000000001e-45  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.315032 
 
 
-
 
NC_013595  Sros_5651  response regulator receiver protein  46.48 
 
 
222 aa  180  1e-44  Streptosporangium roseum DSM 43021  Bacteria  normal  0.205762  normal 
 
 
-
 
NC_013530  Xcel_1424  two component transcriptional regulator, winged helix family  48.85 
 
 
227 aa  180  2e-44  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.962771  n/a   
 
 
-
 
NC_013093  Amir_4514  two component transcriptional regulator, winged helix family  49.77 
 
 
222 aa  179  4e-44  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0331921  n/a   
 
 
-
 
NC_007777  Francci3_2444  two component transcriptional regulator  51.61 
 
 
221 aa  178  7e-44  Frankia sp. CcI3  Bacteria  normal  0.237692  normal 
 
 
-
 
NC_013947  Snas_6028  two component transcriptional regulator, winged helix family  48.39 
 
 
227 aa  177  1e-43  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.497989 
 
 
-
 
NC_014158  Tpau_0520  two component transcriptional regulator, winged helix family  47.47 
 
 
224 aa  176  2e-43  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_5788  two component transcriptional regulator, winged helix family  47.93 
 
 
235 aa  176  3e-43  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.767422  normal 
 
 
-
 
NC_013595  Sros_4756  response regulator receiver protein  47.47 
 
 
231 aa  174  7e-43  Streptosporangium roseum DSM 43021  Bacteria  normal  0.666575  normal  0.223314 
 
 
-
 
NC_009921  Franean1_7133  two component transcriptional regulator  46.54 
 
 
243 aa  173  1.9999999999999998e-42  Frankia sp. EAN1pec  Bacteria  normal  0.0709918  normal 
 
 
-
 
NC_013159  Svir_24140  response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein  48.62 
 
 
231 aa  173  1.9999999999999998e-42  Saccharomonospora viridis DSM 43017  Bacteria  decreased coverage  0.00201668  decreased coverage  0.0036779 
 
 
-
 
NC_013235  Namu_3750  two component transcriptional regulator, winged helix family  47.47 
 
 
220 aa  167  8e-41  Nakamurella multipartita DSM 44233  Bacteria  normal  0.169526  normal  0.108117 
 
 
-
 
NC_013131  Caci_0470  two component transcriptional regulator, winged helix family  50.23 
 
 
234 aa  164  6.9999999999999995e-40  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_2625  two component transcriptional regulator  40.27 
 
 
231 aa  164  1.0000000000000001e-39  Roseiflexus sp. RS-1  Bacteria  normal  0.983258  normal 
 
 
-
 
NC_013739  Cwoe_1412  two component transcriptional regulator, winged helix family  45.85 
 
 
228 aa  162  3e-39  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.789808 
 
 
-
 
NC_013093  Amir_1526  two component transcriptional regulator, winged helix family  49.08 
 
 
225 aa  159  3e-38  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_4628  two component transcriptional regulator, winged helix family  36.2 
 
 
224 aa  142  3e-33  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.000289587 
 
 
-
 
NC_011726  PCC8801_1416  two component transcriptional regulator, winged helix family  37.1 
 
 
225 aa  139  1.9999999999999998e-32  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1445  two component transcriptional regulator, winged helix family  37.1 
 
 
225 aa  139  1.9999999999999998e-32  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_0767  two component transcriptional regulator, winged helix family  36.65 
 
 
229 aa  139  3.9999999999999997e-32  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.870104  normal 
 
 
-
 
NC_007413  Ava_2421  response regulator receiver modulated diguanylate cyclase  38.46 
 
 
684 aa  138  6e-32  Anabaena variabilis ATCC 29413  Bacteria  normal  hitchhiker  0.0000243595 
 
 
-
 
NC_010831  Cphamn1_0990  two component transcriptional regulator, winged helix family  34.86 
 
 
222 aa  138  7e-32  Chlorobium phaeobacteroides BS1  Bacteria  hitchhiker  0.000957791  decreased coverage  0.0000715536 
 
 
-
 
NC_014151  Cfla_0861  two component transcriptional regulator, winged helix family  38.99 
 
 
225 aa  137  1e-31  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.156886  normal 
 
 
-
 
NC_002947  PP_0047  DNA-binding heavy metal response regulator, putative  35.29 
 
 
224 aa  136  2e-31  Pseudomonas putida KT2440  Bacteria  normal  0.116112  hitchhiker  0.00000494979 
 
 
-
 
NC_010501  PputW619_0064  two component heavy metal response transcriptional regulator  35.29 
 
 
224 aa  136  2e-31  Pseudomonas putida W619  Bacteria  normal  hitchhiker  0.000118539 
 
 
-
 
NC_012918  GM21_3720  two component heavy metal response transcriptional regulator, winged helix family  36.82 
 
 
224 aa  136  2e-31  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010322  PputGB1_0061  two component heavy metal response transcriptional regulator  35.29 
 
 
224 aa  136  2e-31  Pseudomonas putida GB-1  Bacteria  normal  normal  0.0868462 
 
 
-
 
NC_009512  Pput_0061  two component heavy metal response transcriptional regulator  35.29 
 
 
224 aa  136  2e-31  Pseudomonas putida F1  Bacteria  normal  0.382659  hitchhiker  0.0034413 
 
 
-
 
NC_011369  Rleg2_0704  two component transcriptional regulator, winged helix family  37.1 
 
 
227 aa  136  2e-31  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.205827  normal  0.593451 
 
 
-
 
NC_011729  PCC7424_2752  multi-component transcriptional regulator, winged helix family  34.39 
 
 
799 aa  135  4e-31  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_011661  Dtur_0537  two component transcriptional regulator, winged helix family  32.29 
 
 
224 aa  134  8e-31  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.0716782  n/a   
 
 
-
 
NC_007413  Ava_0238  multi-component transcriptional regulator  35.29 
 
 
1629 aa  133  1.9999999999999998e-30  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_0851  two component transcriptional regulator  33.79 
 
 
222 aa  133  1.9999999999999998e-30  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3615  two component heavy metal response transcriptional regulator, winged helix family  35.91 
 
 
224 aa  133  1.9999999999999998e-30  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_013203  Apar_0090  two component transcriptional regulator, winged helix family  34.4 
 
 
226 aa  133  1.9999999999999998e-30  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_013161  Cyan8802_4261  two component transcriptional regulator, winged helix family  34.84 
 
 
224 aa  132  3e-30  Cyanothece sp. PCC 8802  Bacteria  normal  0.906422  normal  0.0109867 
 
 
-
 
NC_012034  Athe_0280  two component transcriptional regulator, winged helix family  33.18 
 
 
225 aa  132  3.9999999999999996e-30  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_3423  response regulator receiver protein  39.09 
 
 
224 aa  132  3.9999999999999996e-30  Streptosporangium roseum DSM 43021  Bacteria  normal  0.699539  normal  0.107362 
 
 
-
 
NC_013171  Apre_0086  two component transcriptional regulator, winged helix family  32.27 
 
 
223 aa  131  6.999999999999999e-30  Anaerococcus prevotii DSM 20548  Bacteria  hitchhiker  0.00000430601  n/a   
 
 
-
 
NC_011726  PCC8801_4222  two component transcriptional regulator, winged helix family  34.84 
 
 
224 aa  131  6.999999999999999e-30  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011726  PCC8801_3668  two component transcriptional regulator, winged helix family  33.03 
 
 
635 aa  131  7.999999999999999e-30  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011071  Smal_3181  two component transcriptional regulator, winged helix family  37.56 
 
 
225 aa  131  9e-30  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_0029  DNA-binding response regulator CzrR  34.7 
 
 
224 aa  130  1.0000000000000001e-29  Pseudomonas putida KT2440  Bacteria  normal  hitchhiker  0.00000398254 
 
 
-
 
NC_010322  PputGB1_0043  two component heavy metal response transcriptional regulator  34.7 
 
 
224 aa  130  1.0000000000000001e-29  Pseudomonas putida GB-1  Bacteria  normal  0.216902  normal 
 
 
-
 
NC_010717  PXO_02303  two-component system regulatory protein  37.56 
 
 
225 aa  130  1.0000000000000001e-29  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_0046  two component heavy metal response transcriptional regulator  34.7 
 
 
224 aa  130  1.0000000000000001e-29  Pseudomonas putida W619  Bacteria  normal  0.398344  normal  0.151204 
 
 
-
 
NC_009512  Pput_0043  two component heavy metal response transcriptional regulator  34.7 
 
 
224 aa  130  1.0000000000000001e-29  Pseudomonas putida F1  Bacteria  normal  0.955175  hitchhiker  0.00039578 
 
 
-
 
NC_007777  Francci3_2401  two component transcriptional regulator  39.29 
 
 
283 aa  130  1.0000000000000001e-29  Frankia sp. CcI3  Bacteria  normal  0.0476592  normal  0.0197415 
 
 
-
 
NC_010577  XfasM23_2026  two component transcriptional regulator  38.01 
 
 
225 aa  130  1.0000000000000001e-29  Xylella fastidiosa M23  Bacteria  normal  0.117597  n/a   
 
 
-
 
NC_002947  PP_2158  two component heavy metal response transcriptional regulator  35.29 
 
 
226 aa  130  2.0000000000000002e-29  Pseudomonas putida KT2440  Bacteria  normal  0.144347  normal  0.036827 
 
 
-
 
NC_009921  Franean1_3859  two component transcriptional regulator  36.82 
 
 
235 aa  130  2.0000000000000002e-29  Frankia sp. EAN1pec  Bacteria  normal  0.0389848  normal 
 
 
-
 
NC_013525  Tter_1435  two component transcriptional regulator, winged helix family  36.36 
 
 
233 aa  130  2.0000000000000002e-29  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_009565  TBFG_10613  two component system DNA binding transcriptional regulatory protein tcrA  36.82 
 
 
253 aa  130  2.0000000000000002e-29  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.0000000499525  normal  0.750249 
 
 
-
 
NC_004578  PSPTO_0378  DNA-binding heavy metal response regulator  36.49 
 
 
224 aa  129  3e-29  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_1699  two component heavy metal response transcriptional regulator  35.29 
 
 
226 aa  129  3e-29  Pseudomonas putida GB-1  Bacteria  normal  hitchhiker  0.00419772 
 
 
-
 
NC_010581  Bind_2236  two component transcriptional regulator  35.59 
 
 
227 aa  129  3e-29  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.214459  normal 
 
 
-
 
NC_007005  Psyr_4800  heavy metal response regulator  36.49 
 
 
224 aa  129  3e-29  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  hitchhiker  0.00185939 
 
 
-
 
NC_009654  Mmwyl1_0419  two component transcriptional regulator  34.53 
 
 
229 aa  129  4.0000000000000003e-29  Marinomonas sp. MWYL1  Bacteria  normal  0.509677  normal 
 
 
-
 
NC_007298  Daro_2474  heavy metal response regulator  34.86 
 
 
223 aa  129  4.0000000000000003e-29  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_3002  two component transcriptional regulator  37.1 
 
 
230 aa  129  4.0000000000000003e-29  Acidovorax citrulli AAC00-1  Bacteria  normal  0.67465  normal  0.369251 
 
 
-
 
NC_013730  Slin_1849  two component transcriptional regulator, winged helix family  33.93 
 
 
228 aa  128  5.0000000000000004e-29  Spirosoma linguale DSM 74  Bacteria  normal  0.418833  normal 
 
 
-
 
NC_009512  Pput_3584  two component heavy metal response transcriptional regulator  35.29 
 
 
226 aa  129  5.0000000000000004e-29  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_8215  two component transcriptional regulator, winged helix family  36.32 
 
 
226 aa  128  7.000000000000001e-29  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013205  Aaci_2264  two component transcriptional regulator, winged helix family  35.16 
 
 
231 aa  128  8.000000000000001e-29  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  hitchhiker  0.00910741  n/a   
 
 
-
 
NC_007412  Ava_C0163  multi-component transcriptional regulator  34.84 
 
 
725 aa  128  8.000000000000001e-29  Anabaena variabilis ATCC 29413  Bacteria  normal  0.892768  normal 
 
 
-
 
NC_009467  Acry_3106  two component heavy metal response transcriptional regulator  37.95 
 
 
225 aa  128  8.000000000000001e-29  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU2946  DNA-binding heavy metal response regulator  36.36 
 
 
223 aa  127  9.000000000000001e-29  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_3722  two component transcriptional regulator, winged helix family  32.58 
 
 
635 aa  127  1.0000000000000001e-28  Cyanothece sp. PCC 8802  Bacteria  normal  0.940611  normal  0.125775 
 
 
-
 
NC_007298  Daro_2259  two component heavy metal response transcriptional regulator  36.2 
 
 
225 aa  127  1.0000000000000001e-28  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_3740  two component transcriptional regulator  34.98 
 
 
226 aa  127  1.0000000000000001e-28  Marinobacter aquaeolei VT8  Bacteria  normal  0.487084  n/a   
 
 
-
 
NC_010803  Clim_1291  two component transcriptional regulator, winged helix family  33.49 
 
 
222 aa  126  2.0000000000000002e-28  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_007514  Cag_0440  two component transcriptional regulator  34.86 
 
 
225 aa  127  2.0000000000000002e-28  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.747409  n/a   
 
 
-
 
NC_006368  lpp0781  hypothetical protein  34.09 
 
 
223 aa  125  3e-28  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_013411  GYMC61_0785  two component transcriptional regulator, winged helix family  37.61 
 
 
235 aa  125  3e-28  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008699  Noca_1613  response regulator receiver  35.45 
 
 
225 aa  126  3e-28  Nocardioides sp. JS614  Bacteria  normal  0.97266  n/a   
 
 
-
 
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