6 homologs were found in PanDaTox collection
for query gene Msed_R0025 on replicon NC_009440
Organism: Metallosphaera sedula DSM 5348



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009440  Msed_R0025  tRNA-Leu  100 
 
 
96 bp  190  4e-47  Metallosphaera sedula DSM 5348  Archaea  normal  normal 
 
 
-
 
NC_009954  Cmaq_R0009  tRNA-Leu  92.68 
 
 
88 bp  50.1  0.0001  Caldivirga maquilingensis IC-167  Archaea  normal  0.0342668  normal 
 
 
-
 
CP001800  Ssol_R0034  tRNA-Leu  83.33 
 
 
100 bp  48.1  0.0004  Sulfolobus solfataricus 98/2  Archaea  normal  n/a   
 
 
-
 
NC_009440  Msed_R0006  tRNA-Leu  84.85 
 
 
97 bp  44.1  0.006  Metallosphaera sedula DSM 5348  Archaea  normal  normal  0.16425 
 
 
-
 
NC_013595  Sros_R0005  tRNA-Ser  100 
 
 
90 bp  44.1  0.006  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_R0058  tRNA-Ser  100 
 
 
89 bp  44.1  0.006  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
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