More than 300 homologs were found in PanDaTox collection
for query gene Mpe_A2603 on replicon NC_008825
Organism: Methylibium petroleiphilum PM1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008825  Mpe_A2603  two component LuxR family transcriptional regulator  100 
 
 
222 aa  434  1e-121  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_3850  two component LuxR family transcriptional regulator  57.21 
 
 
224 aa  220  9.999999999999999e-57  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007347  Reut_A1785  two component LuxR family transcriptional regulator  54.59 
 
 
206 aa  213  1.9999999999999998e-54  Ralstonia eutropha JMP134  Bacteria  normal  0.762084  n/a   
 
 
-
 
NC_007952  Bxe_B2471  two component LuxR family transcriptional regulator  47.93 
 
 
220 aa  176  2e-43  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.55611 
 
 
-
 
NC_007947  Mfla_0815  two component LuxR family transcriptional regulator  46.23 
 
 
213 aa  174  9e-43  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.00000180305  normal 
 
 
-
 
NC_008340  Mlg_2722  two component LuxR family transcriptional regulator  46.98 
 
 
214 aa  167  1e-40  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.378798 
 
 
-
 
NC_010725  Mpop_3828  two component transcriptional regulator, LuxR family  41.71 
 
 
220 aa  166  2e-40  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A0357  two-component response regulator  46.48 
 
 
210 aa  166  2.9999999999999998e-40  Methylibium petroleiphilum PM1  Bacteria  hitchhiker  0.00848176  normal 
 
 
-
 
NC_010505  Mrad2831_0320  two component LuxR family transcriptional regulator  44.39 
 
 
221 aa  164  1.0000000000000001e-39  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.15389  normal 
 
 
-
 
NC_010627  Bphy_7764  two component LuxR family transcriptional regulator  41.71 
 
 
210 aa  162  4.0000000000000004e-39  Burkholderia phymatum STM815  Bacteria  normal  0.527093  normal 
 
 
-
 
NC_009485  BBta_6075  two-component response regulator  44.98 
 
 
216 aa  161  9e-39  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_6558  two component LuxR family transcriptional regulator  41.23 
 
 
210 aa  161  9e-39  Burkholderia phymatum STM815  Bacteria  normal  normal  0.458284 
 
 
-
 
NC_010676  Bphyt_6235  two component transcriptional regulator, LuxR family  40.67 
 
 
210 aa  159  3e-38  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.612124 
 
 
-
 
NC_011666  Msil_2271  two component transcriptional regulator, LuxR family  43.32 
 
 
223 aa  152  2.9999999999999998e-36  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_007298  Daro_1400  two component LuxR family transcriptional regulator  37.74 
 
 
216 aa  152  4e-36  Dechloromonas aromatica RCB  Bacteria  normal  0.973321  normal  0.0605156 
 
 
-
 
NC_012856  Rpic12D_0153  two component transcriptional regulator, LuxR family  41.98 
 
 
210 aa  152  5e-36  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_5330  two component LuxR family transcriptional regulator  42.45 
 
 
215 aa  151  8.999999999999999e-36  Burkholderia ambifaria AMMD  Bacteria  normal  0.858277  normal 
 
 
-
 
NC_003295  RSc0292  response regulator transcription regulator protein  41.04 
 
 
210 aa  150  1e-35  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_0145  two component transcriptional regulator, LuxR family  41.51 
 
 
210 aa  150  1e-35  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_2640  two component LuxR family transcriptional regulator  46.38 
 
 
205 aa  150  1e-35  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.437778  normal 
 
 
-
 
NC_002977  MCA0777  LuxR family DNA binding response regulator  42.86 
 
 
215 aa  149  4e-35  Methylococcus capsulatus str. Bath  Bacteria  normal  0.891731  n/a   
 
 
-
 
NC_010557  BamMC406_6196  two component LuxR family transcriptional regulator  40.57 
 
 
215 aa  148  6e-35  Burkholderia ambifaria MC40-6  Bacteria  normal  0.280791  normal  0.522243 
 
 
-
 
NC_007951  Bxe_A1850  two component LuxR family transcriptional regulator  41.23 
 
 
216 aa  147  8e-35  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_010087  Bmul_5903  two component LuxR family transcriptional regulator  40.09 
 
 
215 aa  148  8e-35  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.68975  normal  0.398777 
 
 
-
 
NC_007347  Reut_A0121  two component LuxR family transcriptional regulator  40.57 
 
 
210 aa  147  1.0000000000000001e-34  Ralstonia eutropha JMP134  Bacteria  normal  0.830531  n/a   
 
 
-
 
NC_010676  Bphyt_6314  two component transcriptional regulator, LuxR family  40.76 
 
 
216 aa  146  3e-34  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1987  two component LuxR family transcriptional regulator  39.63 
 
 
215 aa  145  4.0000000000000006e-34  Methylobacillus flagellatus KT  Bacteria  normal  0.0949899  normal 
 
 
-
 
NC_010515  Bcenmc03_3925  two component LuxR family transcriptional regulator  42.45 
 
 
215 aa  145  5e-34  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007435  BURPS1710b_A0127  LuxR family DNA-binding response regulator  40.28 
 
 
215 aa  145  6e-34  Burkholderia pseudomallei 1710b  Bacteria  normal  0.914848  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1551  LuxR family DNA-binding response regulator  40.28 
 
 
215 aa  145  6e-34  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A1634  LuxR family DNA-binding response regulator  40.28 
 
 
215 aa  145  6e-34  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_0154  two component transcriptional regulator, LuxR family  41.36 
 
 
244 aa  144  7.0000000000000006e-34  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II1247  LuxR family DNA-binding response regulator  39.81 
 
 
215 aa  144  1e-33  Burkholderia thailandensis E264  Bacteria  normal  0.32702  n/a   
 
 
-
 
NC_013421  Pecwa_1775  two component transcriptional regulator, LuxR family  40.95 
 
 
209 aa  144  1e-33  Pectobacterium wasabiae WPP163  Bacteria  normal  0.814588  n/a   
 
 
-
 
NC_007973  Rmet_0090  two component LuxR family transcriptional regulator  39.62 
 
 
210 aa  144  1e-33  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_008543  Bcen2424_3595  two component LuxR family transcriptional regulator  41.98 
 
 
215 aa  144  1e-33  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_010524  Lcho_1402  two component LuxR family transcriptional regulator  43.81 
 
 
211 aa  143  2e-33  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009656  PSPA7_0745  putative two-component response regulator  38.21 
 
 
210 aa  142  3e-33  Pseudomonas aeruginosa PA7  Bacteria  normal  0.536324  n/a   
 
 
-
 
NC_010676  Bphyt_5584  two component transcriptional regulator, LuxR family  39.91 
 
 
215 aa  142  3e-33  Burkholderia phytofirmans PsJN  Bacteria  normal  0.282667  normal 
 
 
-
 
NC_007511  Bcep18194_B2520  two component LuxR family transcriptional regulator  41.2 
 
 
214 aa  143  3e-33  Burkholderia sp. 383  Bacteria  normal  0.943169  normal  0.310419 
 
 
-
 
NC_012917  PC1_1369  two component transcriptional regulator, LuxR family  41.43 
 
 
218 aa  143  3e-33  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.380225  n/a   
 
 
-
 
NC_008463  PA14_07840  putative two-component response regulator  37.74 
 
 
210 aa  142  4e-33  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.0171986 
 
 
-
 
NC_011891  A2cp1_2172  two component transcriptional regulator, LuxR family  41.94 
 
 
210 aa  142  5e-33  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011992  Dtpsy_2832  two component transcriptional regulator, LuxR family  36.79 
 
 
210 aa  140  9.999999999999999e-33  Acidovorax ebreus TPSY  Bacteria  normal  0.988429  n/a   
 
 
-
 
NC_009456  VC0395_0622  transcriptional regulator UhpA  35.85 
 
 
208 aa  141  9.999999999999999e-33  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_3597  two component LuxR family transcriptional regulator  41.9 
 
 
214 aa  140  9.999999999999999e-33  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_3509  two component LuxR family transcriptional regulator  36.79 
 
 
239 aa  140  9.999999999999999e-33  Acidovorax sp. JS42  Bacteria  normal  0.325902  normal 
 
 
-
 
NC_010552  BamMC406_4248  two component LuxR family transcriptional regulator  39.62 
 
 
215 aa  140  1.9999999999999998e-32  Burkholderia ambifaria MC40-6  Bacteria  normal  0.206342  normal 
 
 
-
 
NC_008391  Bamb_3774  two component LuxR family transcriptional regulator  39.62 
 
 
215 aa  140  1.9999999999999998e-32  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.329832 
 
 
-
 
NC_011830  Dhaf_1194  two component transcriptional regulator, LuxR family  37.22 
 
 
217 aa  139  3e-32  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.272513  n/a   
 
 
-
 
NC_010086  Bmul_4256  two component LuxR family transcriptional regulator  39.62 
 
 
215 aa  139  3e-32  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.282152  normal 
 
 
-
 
NC_008781  Pnap_0790  two component LuxR family transcriptional regulator  36.28 
 
 
214 aa  139  3e-32  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.870503  normal  0.997505 
 
 
-
 
NC_010524  Lcho_1400  two component LuxR family transcriptional regulator  41.9 
 
 
205 aa  139  3.9999999999999997e-32  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007492  Pfl01_5126  two component LuxR family transcriptional regulator  37.26 
 
 
209 aa  139  4.999999999999999e-32  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.135043  normal  0.384971 
 
 
-
 
NC_007614  Nmul_A1336  two component LuxR family transcriptional regulator  37.26 
 
 
208 aa  138  4.999999999999999e-32  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1762  two component LuxR family transcriptional regulator  42.06 
 
 
210 aa  139  4.999999999999999e-32  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B1652  two component LuxR family transcriptional regulator  40.09 
 
 
215 aa  138  7e-32  Burkholderia sp. 383  Bacteria  normal  0.187578  normal  0.308689 
 
 
-
 
NC_010515  Bcenmc03_5989  two component LuxR family transcriptional regulator  40.09 
 
 
215 aa  137  1e-31  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_1298  two component transcriptional regulator, LuxR family  41.63 
 
 
228 aa  137  1e-31  Conexibacter woesei DSM 14684  Bacteria  normal  0.70055  normal 
 
 
-
 
NC_007650  BTH_II1570  LuxR family DNA-binding response regulator  38.21 
 
 
215 aa  137  1e-31  Burkholderia thailandensis E264  Bacteria  normal  0.17909  n/a   
 
 
-
 
NC_008061  Bcen_4002  two component LuxR family transcriptional regulator  40.09 
 
 
215 aa  137  1e-31  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A1228  LuxR family DNA-binding response regulator  38.21 
 
 
215 aa  137  1e-31  Burkholderia pseudomallei 668  Bacteria  normal  0.0904383  n/a   
 
 
-
 
NC_008543  Bcen2424_4365  two component LuxR family transcriptional regulator  40.09 
 
 
215 aa  137  1e-31  Burkholderia cenocepacia HI2424  Bacteria  normal  0.902614  normal 
 
 
-
 
NC_007347  Reut_A1216  two component LuxR family transcriptional regulator  40.76 
 
 
215 aa  136  2e-31  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A2427  LuxR family DNA-binding response regulator  37.27 
 
 
282 aa  136  2e-31  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A0478  two-component response regulator  41.71 
 
 
215 aa  136  2e-31  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.0760202 
 
 
-
 
NC_009439  Pmen_1951  two component LuxR family transcriptional regulator  40.65 
 
 
216 aa  136  2e-31  Pseudomonas mendocina ymp  Bacteria  normal  0.142543  normal  0.70584 
 
 
-
 
NC_007005  Psyr_4618  LuxR response regulator receiver  36.79 
 
 
209 aa  136  3.0000000000000003e-31  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.601025 
 
 
-
 
NC_007954  Sden_1436  response regulator  38.46 
 
 
214 aa  135  3.0000000000000003e-31  Shewanella denitrificans OS217  Bacteria  normal  0.794512  n/a   
 
 
-
 
NC_009831  Ssed_2455  response regulator  36.23 
 
 
214 aa  135  3.0000000000000003e-31  Shewanella sediminis HAW-EB3  Bacteria  normal  0.140183  normal  0.431169 
 
 
-
 
NC_011312  VSAL_I2141  response regulator  34.91 
 
 
214 aa  135  4e-31  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.126922  n/a   
 
 
-
 
NC_004578  PSPTO_0560  DNA-binding response regulator, LuxR family  36.79 
 
 
209 aa  135  4e-31  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA0703  LuxR family DNA-binding response regulator  37.74 
 
 
215 aa  135  4e-31  Burkholderia mallei ATCC 23344  Bacteria  normal  0.533722  n/a   
 
 
-
 
NC_009438  Sputcn32_1639  response regulator  35.75 
 
 
226 aa  135  4e-31  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00137195  n/a   
 
 
-
 
NC_009079  BMA10247_A1725  LuxR family DNA-binding response regulator  37.74 
 
 
215 aa  135  4e-31  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_1848  response regulator  36.79 
 
 
218 aa  135  4e-31  Serratia proteamaculans 568  Bacteria  normal  0.0524957  normal 
 
 
-
 
NC_008835  BMA10229_0760  LuxR family DNA-binding response regulator  37.74 
 
 
215 aa  135  4e-31  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1154  LuxR family DNA-binding response regulator  37.74 
 
 
215 aa  135  4e-31  Burkholderia pseudomallei 1106a  Bacteria  normal  0.324728  n/a   
 
 
-
 
NC_011758  Mchl_5446  two component transcriptional regulator, LuxR family  43.6 
 
 
218 aa  135  5e-31  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.26634  normal 
 
 
-
 
NC_009665  Shew185_2600  response regulator  35.75 
 
 
214 aa  135  5e-31  Shewanella baltica OS185  Bacteria  hitchhiker  0.000388579  n/a   
 
 
-
 
NC_011145  AnaeK_2078  two component transcriptional regulator, LuxR family  41.12 
 
 
210 aa  135  5e-31  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_0242  two component LuxR family transcriptional regulator  43.46 
 
 
211 aa  135  5e-31  Leptothrix cholodnii SP-6  Bacteria  n/a    decreased coverage  0.000159114 
 
 
-
 
NC_009997  Sbal195_2677  response regulator  35.75 
 
 
214 aa  135  5e-31  Shewanella baltica OS195  Bacteria  normal  0.0738952  normal  0.957867 
 
 
-
 
NC_009052  Sbal_2562  response regulator  35.75 
 
 
214 aa  135  5e-31  Shewanella baltica OS155  Bacteria  normal  0.0171044  n/a   
 
 
-
 
NC_011663  Sbal223_1782  response regulator  35.75 
 
 
214 aa  135  5e-31  Shewanella baltica OS223  Bacteria  normal  0.0381154  hitchhiker  0.0000000750596 
 
 
-
 
NC_008825  Mpe_A2902  two component LuxR family transcriptional regulator  36.15 
 
 
212 aa  135  5e-31  Methylibium petroleiphilum PM1  Bacteria  normal  0.255362  normal 
 
 
-
 
NC_008321  Shewmr4_1547  response regulator  35.75 
 
 
214 aa  135  6.0000000000000005e-31  Shewanella sp. MR-4  Bacteria  hitchhiker  0.0000288339  normal 
 
 
-
 
NC_008577  Shewana3_1608  response regulator  35.75 
 
 
214 aa  135  6.0000000000000005e-31  Shewanella sp. ANA-3  Bacteria  unclonable  0.00000000660452  normal  0.150334 
 
 
-
 
NC_013204  Elen_1743  two component transcriptional regulator, LuxR family  38.6 
 
 
214 aa  135  7.000000000000001e-31  Eggerthella lenta DSM 2243  Bacteria  normal  0.370009  normal  0.039988 
 
 
-
 
NC_008752  Aave_3862  two component LuxR family transcriptional regulator  34.91 
 
 
210 aa  135  7.000000000000001e-31  Acidovorax citrulli AAC00-1  Bacteria  normal  0.734244  normal 
 
 
-
 
NC_010468  EcolC_1725  response regulator  36.62 
 
 
218 aa  134  8e-31  Escherichia coli ATCC 8739  Bacteria  hitchhiker  0.000351159  normal 
 
 
-
 
NC_009708  YpsIP31758_2402  LuxR family DNA-binding response regulator  37.32 
 
 
209 aa  134  8e-31  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  0.0000000000000137953  n/a   
 
 
-
 
NC_010465  YPK_2499  two component LuxR family transcriptional regulator  37.32 
 
 
209 aa  134  8e-31  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.449467  n/a   
 
 
-
 
NC_008322  Shewmr7_1614  response regulator  35.75 
 
 
214 aa  134  8e-31  Shewanella sp. MR-7  Bacteria  unclonable  0.000000746753  normal  0.505035 
 
 
-
 
NC_010159  YpAngola_A1688  LuxR family DNA-binding response regulator  37.32 
 
 
209 aa  134  8e-31  Yersinia pestis Angola  Bacteria  hitchhiker  0.000000202542  normal  0.0533619 
 
 
-
 
NC_010501  PputW619_4792  two component LuxR family transcriptional regulator  40.47 
 
 
209 aa  134  9.999999999999999e-31  Pseudomonas putida W619  Bacteria  normal  normal  0.951072 
 
 
-
 
NC_008345  Sfri_2649  response regulator  37.09 
 
 
214 aa  134  9.999999999999999e-31  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_1137  two component LuxR family transcriptional regulator  36.79 
 
 
214 aa  134  9.999999999999999e-31  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_1607  response regulator  35.65 
 
 
214 aa  134  9.999999999999999e-31  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.00000106395  normal 
 
 
-
 
NC_008825  Mpe_A3494  two component LuxR family transcriptional regulator  35.94 
 
 
226 aa  133  1.9999999999999998e-30  Methylibium petroleiphilum PM1  Bacteria  normal  0.514045  normal 
 
 
-
 
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