54 homologs were found in PanDaTox collection
for query gene Mnod_7356 on replicon NC_011894
Organism: Methylobacterium nodulans ORS 2060



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011894  Mnod_7356  XRE family transcriptional regulator  100 
 
 
84 aa  167  4e-41  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.87835  n/a   
 
 
-
 
NC_010505  Mrad2831_2429  XRE family transcriptional regulator  47.37 
 
 
143 aa  60.8  0.000000007  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.214939  normal 
 
 
-
 
NC_010725  Mpop_3762  transcriptional regulator, XRE family  44.16 
 
 
135 aa  56.2  0.0000001  Methylobacterium populi BJ001  Bacteria  normal  0.117326  normal 
 
 
-
 
NC_010725  Mpop_1563  transcriptional regulator, XRE family  44.44 
 
 
135 aa  55.8  0.0000002  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_6290  transcriptional regulator, XRE family  42.86 
 
 
121 aa  55.1  0.0000003  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_0971  transcriptional regulator, XRE family  43.21 
 
 
135 aa  54.3  0.0000006  Methylobacterium populi BJ001  Bacteria  normal  0.508784  normal 
 
 
-
 
NC_010172  Mext_1041  helix-turn-helix domain-containing protein  43.21 
 
 
142 aa  53.5  0.0000009  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.0368815 
 
 
-
 
NC_011757  Mchl_1168  transcriptional regulator, XRE family  46.67 
 
 
142 aa  53.5  0.0000009  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.092853  normal 
 
 
-
 
NC_010172  Mext_0154  helix-turn-helix domain-containing protein  41.25 
 
 
134 aa  53.5  0.000001  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_3125  XRE family transcriptional regulator  50.88 
 
 
162 aa  51.6  0.000004  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.412901  normal 
 
 
-
 
NC_008686  Pden_1388  XRE family transcriptional regulator  40 
 
 
119 aa  51.2  0.000005  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.346177 
 
 
-
 
NC_010505  Mrad2831_0066  XRE family transcriptional regulator  50 
 
 
146 aa  50.8  0.000006  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0319384  normal 
 
 
-
 
NC_009485  BBta_2806  putative transcriptional regulatory protein  42.37 
 
 
131 aa  50.4  0.000008  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_2160  transcriptional regulator, XRE family  46.03 
 
 
134 aa  50.1  0.00001  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.468793  n/a   
 
 
-
 
NC_010725  Mpop_2727  transcriptional regulator, XRE family  44.44 
 
 
133 aa  49.3  0.00002  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_3790  XRE family transcriptional regulator  40 
 
 
129 aa  48.9  0.00002  Caulobacter sp. K31  Bacteria  normal  hitchhiker  0.0000021488 
 
 
-
 
NC_008783  BARBAKC583_1248  DNA-binding protein  31.71 
 
 
137 aa  48.9  0.00002  Bartonella bacilliformis KC583  Bacteria  normal  0.821781  n/a   
 
 
-
 
NC_008254  Meso_3923  XRE family transcriptional regulator  50 
 
 
140 aa  47.8  0.00005  Chelativorans sp. BNC1  Bacteria  normal  0.680179  n/a   
 
 
-
 
NC_007964  Nham_0026  XRE family transcriptional regulator  60 
 
 
139 aa  47.4  0.00006  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_4834  transcriptional regulator, XRE family  42.62 
 
 
135 aa  47.4  0.00007  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.592449  normal 
 
 
-
 
NC_009667  Oant_0753  XRE family transcriptional regulator  43.08 
 
 
135 aa  47.4  0.00007  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.057083  n/a   
 
 
-
 
NC_010511  M446_2456  XRE family transcriptional regulator  44.44 
 
 
134 aa  47.4  0.00007  Methylobacterium sp. 4-46  Bacteria  normal  0.214066  normal  0.20041 
 
 
-
 
NC_009952  Dshi_2775  putative transcriptional regulator  41.77 
 
 
123 aa  47.4  0.00007  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3522  helix-turn-helix domain-containing protein  44.83 
 
 
135 aa  47.4  0.00007  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_0019  XRE family transcriptional regulator  56.41 
 
 
139 aa  47  0.00009  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal  0.0558597 
 
 
-
 
NC_011004  Rpal_0447  transcriptional regulator, XRE family  66.67 
 
 
139 aa  46.2  0.0001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009505  BOV_2071  Cro/CI family transcriptional regulator  37.31 
 
 
137 aa  45.8  0.0002  Brucella ovis ATCC 25840  Bacteria  normal  0.0247654  n/a   
 
 
-
 
NC_007925  RPC_0473  XRE family transcriptional regulator  63.33 
 
 
138 aa  45.8  0.0002  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.54052 
 
 
-
 
NC_007958  RPD_0237  XRE family transcriptional regulator  63.33 
 
 
139 aa  45.8  0.0002  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR2159  Cro/CI family transcriptional regulator  37.31 
 
 
137 aa  45.8  0.0002  Brucella suis 1330  Bacteria  unclonable  0.00000314405  n/a   
 
 
-
 
NC_007778  RPB_0595  XRE family transcriptional regulator  63.33 
 
 
139 aa  45.4  0.0003  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.958783  normal 
 
 
-
 
NC_009485  BBta_0051  XRE family transcriptional regulator  60 
 
 
138 aa  45.1  0.0003  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_1232  XRE family transcriptional regulator  37.04 
 
 
126 aa  44.7  0.0004  Jannaschia sp. CCS1  Bacteria  normal  0.236768  normal  0.265611 
 
 
-
 
NC_010338  Caul_1149  XRE family transcriptional regulator  38.96 
 
 
120 aa  43.9  0.0008  Caulobacter sp. K31  Bacteria  normal  0.016899  hitchhiker  0.00000234075 
 
 
-
 
NC_010172  Mext_0155  helix-turn-helix domain-containing protein  48.28 
 
 
135 aa  43.9  0.0008  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_0014  transcriptional regulator, XRE family  64.29 
 
 
139 aa  43.5  0.001  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.881591  normal  0.120221 
 
 
-
 
NC_011989  Avi_0443  transcriptional regulator  55 
 
 
140 aa  43.1  0.001  Agrobacterium vitis S4  Bacteria  unclonable  0.0000554716  n/a   
 
 
-
 
NC_012850  Rleg_0016  transcriptional regulator, XRE family  64.29 
 
 
138 aa  43.1  0.001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  hitchhiker  0.000711578 
 
 
-
 
NC_010338  Caul_0329  XRE family transcriptional regulator  32.58 
 
 
171 aa  43.1  0.001  Caulobacter sp. K31  Bacteria  normal  0.846996  normal 
 
 
-
 
NC_009636  Smed_0045  XRE family transcriptional regulator  64.29 
 
 
139 aa  42.7  0.002  Sinorhizobium medicae WSM419  Bacteria  decreased coverage  0.00000742068  hitchhiker  0.0000000000614145 
 
 
-
 
NC_012850  Rleg_3208  transcriptional regulator, XRE family  34.62 
 
 
141 aa  42.4  0.002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_2959  transcriptional regulator, XRE family  35.9 
 
 
141 aa  42  0.003  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.676432  normal  0.753241 
 
 
-
 
NC_010338  Caul_0834  XRE family transcriptional regulator  35.9 
 
 
145 aa  41.6  0.004  Caulobacter sp. K31  Bacteria  normal  0.211274  normal  0.760334 
 
 
-
 
NC_011757  Mchl_4795  transcriptional regulator, XRE family  43.86 
 
 
134 aa  41.2  0.005  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0939257  normal 
 
 
-
 
NC_007643  Rru_A0278  XRE family transcriptional regulator  48.57 
 
 
145 aa  41.2  0.005  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0675  XRE family transcriptional regulator  35.53 
 
 
120 aa  40.8  0.006  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  decreased coverage  0.00325967 
 
 
-
 
NC_009049  Rsph17029_0540  XRE family transcriptional regulator  35.53 
 
 
120 aa  40.8  0.006  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_1892  XRE family transcriptional regulator  35.53 
 
 
120 aa  40.8  0.006  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_0230  transcriptional regulator, XRE family  60 
 
 
137 aa  40.4  0.008  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.737224  n/a   
 
 
-
 
NC_011894  Mnod_6970  hypothetical protein  36.23 
 
 
108 aa  40.4  0.008  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_3177  XRE family transcriptional regulator  60 
 
 
142 aa  40.4  0.009  Methylobacterium sp. 4-46  Bacteria  normal  0.0647326  normal  0.0138701 
 
 
-
 
NC_008044  TM1040_1909  XRE family transcriptional regulator  32.91 
 
 
123 aa  40  0.009  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009720  Xaut_1815  XRE family transcriptional regulator  56.67 
 
 
137 aa  40  0.01  Xanthobacter autotrophicus Py2  Bacteria  normal  0.0843474  normal  0.166838 
 
 
-
 
NC_009620  Smed_4530  XRE family transcriptional regulator  34.85 
 
 
152 aa  40  0.01  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
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