More than 300 homologs were found in PanDaTox collection
for query gene Mext_2539 on replicon NC_010172
Organism: Methylobacterium extorquens PA1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010172  Mext_2539  short-chain dehydrogenase/reductase SDR  100 
 
 
275 aa  538  9.999999999999999e-153  Methylobacterium extorquens PA1  Bacteria  normal  0.0247795  normal 
 
 
-
 
NC_011757  Mchl_2762  short-chain dehydrogenase/reductase SDR  98.04 
 
 
255 aa  490  1e-137  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.836425  normal  0.228083 
 
 
-
 
NC_010725  Mpop_2467  short-chain dehydrogenase/reductase SDR  93.9 
 
 
255 aa  384  1e-105  Methylobacterium populi BJ001  Bacteria  normal  normal  0.0928322 
 
 
-
 
NC_010505  Mrad2831_0946  short-chain dehydrogenase/reductase SDR  67.84 
 
 
255 aa  335  3.9999999999999995e-91  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.841301 
 
 
-
 
NC_011894  Mnod_1942  short-chain dehydrogenase/reductase SDR  68.25 
 
 
255 aa  263  2e-69  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.678089  n/a   
 
 
-
 
NC_010511  M446_0320  short-chain dehydrogenase/reductase SDR  68.24 
 
 
257 aa  260  2e-68  Methylobacterium sp. 4-46  Bacteria  normal  0.25395  normal 
 
 
-
 
NC_010581  Bind_0286  short-chain dehydrogenase/reductase SDR  45.31 
 
 
267 aa  181  9.000000000000001e-45  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_006348  BMA2291  short chain dehydrogenase/reductase family oxidoreductase  45.45 
 
 
262 aa  173  1.9999999999999998e-42  Burkholderia mallei ATCC 23344  Bacteria  normal  0.448302  n/a   
 
 
-
 
NC_009080  BMA10247_2168  short chain dehydrogenase/reductase family oxidoreductase  45.45 
 
 
262 aa  173  1.9999999999999998e-42  Burkholderia mallei NCTC 10247  Bacteria  normal  0.408948  n/a   
 
 
-
 
NC_007434  BURPS1710b_3288  short chain dehydrogenase/reductase family oxidoreductase  45.45 
 
 
262 aa  173  1.9999999999999998e-42  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3273  short chain dehydrogenase/reductase family oxidoreductase  45.45 
 
 
262 aa  173  1.9999999999999998e-42  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A0537  short chain dehydrogenase/reductase family oxidoreductase  45.45 
 
 
262 aa  173  1.9999999999999998e-42  Burkholderia mallei SAVP1  Bacteria  normal  0.618923  n/a   
 
 
-
 
NC_011666  Msil_1220  short-chain dehydrogenase/reductase SDR  46.5 
 
 
267 aa  174  1.9999999999999998e-42  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0396452 
 
 
-
 
NC_008836  BMA10229_A1063  short chain dehydrogenase/reductase family oxidoreductase  45.45 
 
 
262 aa  173  1.9999999999999998e-42  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3237  short chain dehydrogenase/reductase family oxidoreductase  47.77 
 
 
262 aa  169  5e-41  Burkholderia pseudomallei 668  Bacteria  normal  0.85457  n/a   
 
 
-
 
NC_010682  Rpic_1148  short-chain dehydrogenase/reductase SDR  46.22 
 
 
261 aa  168  7e-41  Ralstonia pickettii 12J  Bacteria  normal  0.0372396  normal 
 
 
-
 
NC_010508  Bcenmc03_0749  short-chain dehydrogenase/reductase SDR  42.69 
 
 
261 aa  162  5.0000000000000005e-39  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008542  Bcen2424_0780  short-chain dehydrogenase/reductase SDR  43.67 
 
 
251 aa  157  1e-37  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_011365  Gdia_3539  short-chain dehydrogenase/reductase SDR  39.85 
 
 
271 aa  155  5.0000000000000005e-37  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_1537  short-chain dehydrogenase/reductase SDR  41.1 
 
 
255 aa  153  2e-36  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A3871  Short-chain dehydrogenase/reductase SDR  41.52 
 
 
263 aa  153  2.9999999999999998e-36  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A0427  Short-chain dehydrogenase/reductase SDR  48.86 
 
 
256 aa  150  2e-35  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011761  AFE_3014  oxidoreductase, short-chain dehydrogenase/reductase family  42.08 
 
 
257 aa  147  2.0000000000000003e-34  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.698047  n/a   
 
 
-
 
NC_007651  BTH_I1339  short chain dehydrogenase/reductase family oxidoreductase  43.42 
 
 
261 aa  145  9e-34  Burkholderia thailandensis E264  Bacteria  normal  0.789963  n/a   
 
 
-
 
NC_009512  Pput_3914  short-chain dehydrogenase/reductase SDR  37.66 
 
 
258 aa  142  5e-33  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010084  Bmul_2618  short-chain dehydrogenase/reductase SDR  40.54 
 
 
260 aa  140  1.9999999999999998e-32  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_0297  short-chain dehydrogenase/reductase SDR  41.59 
 
 
236 aa  138  7.999999999999999e-32  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.450899  n/a   
 
 
-
 
NC_011206  Lferr_2621  short-chain dehydrogenase/reductase SDR  38.97 
 
 
223 aa  123  4e-27  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_1619  short-chain dehydrogenase/reductase SDR  35.08 
 
 
277 aa  115  6.9999999999999995e-25  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.44916 
 
 
-
 
NC_011901  Tgr7_1398  short-chain dehydrogenase/reductase SDR  37.22 
 
 
249 aa  114  2.0000000000000002e-24  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.646056  n/a   
 
 
-
 
NC_011666  Msil_0375  short-chain dehydrogenase/reductase SDR  34.17 
 
 
254 aa  113  3e-24  Methylocella silvestris BL2  Bacteria  n/a    normal  0.187579 
 
 
-
 
NC_011369  Rleg2_1440  short-chain dehydrogenase/reductase SDR  34.87 
 
 
277 aa  114  3e-24  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.313918 
 
 
-
 
NC_011365  Gdia_1844  short-chain dehydrogenase/reductase SDR  38.91 
 
 
279 aa  111  1.0000000000000001e-23  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.649512  normal 
 
 
-
 
NC_009436  Ent638_1490  short-chain dehydrogenase/reductase SDR  33.86 
 
 
239 aa  110  3e-23  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_007575  Suden_1903  Short-chain dehydrogenase/reductase SDR  32.38 
 
 
242 aa  110  3e-23  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_3863  short chain dehydrogenase  34.14 
 
 
260 aa  109  5e-23  Dechloromonas aromatica RCB  Bacteria  normal  0.331172  normal 
 
 
-
 
NC_009636  Smed_1362  short-chain dehydrogenase/reductase SDR  35.17 
 
 
282 aa  107  3e-22  Sinorhizobium medicae WSM419  Bacteria  normal  0.390824  normal 
 
 
-
 
NC_007951  Bxe_A4248  short chain dehydrogenase  35.86 
 
 
259 aa  107  3e-22  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.215124 
 
 
-
 
NC_007947  Mfla_2676  short chain dehydrogenase  35.42 
 
 
264 aa  106  4e-22  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.989358 
 
 
-
 
NC_007954  Sden_3371  short-chain dehydrogenase/reductase SDR  33.06 
 
 
239 aa  104  2e-21  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_0470  short chain dehydrogenase  34.18 
 
 
259 aa  103  3e-21  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.382263 
 
 
-
 
NC_007412  Ava_C0112  NAD-dependent epimerase/dehydratase  32.46 
 
 
244 aa  102  1e-20  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_009484  Acry_1727  short-chain dehydrogenase/reductase SDR  35.51 
 
 
265 aa  101  1e-20  Acidiphilium cryptum JF-5  Bacteria  normal  0.218017  n/a   
 
 
-
 
NC_009439  Pmen_2896  short-chain dehydrogenase/reductase SDR  33.33 
 
 
240 aa  100  2e-20  Pseudomonas mendocina ymp  Bacteria  normal  0.148916  normal 
 
 
-
 
NC_007614  Nmul_A2453  short chain dehydrogenase  33.2 
 
 
261 aa  100  2e-20  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A0729  Short-chain dehydrogenase/reductase SDR  34.53 
 
 
259 aa  101  2e-20  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.503076  n/a   
 
 
-
 
NC_008740  Maqu_1484  short-chain dehydrogenase/reductase SDR  33.87 
 
 
260 aa  101  2e-20  Marinobacter aquaeolei VT8  Bacteria  normal  0.591298  n/a   
 
 
-
 
NC_008148  Rxyl_2452  short chain dehydrogenase  36.57 
 
 
250 aa  100  3e-20  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_1222  short-chain dehydrogenase/reductase SDR  35.17 
 
 
258 aa  100  3e-20  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.461582  normal 
 
 
-
 
NC_008700  Sama_0813  short chain dehydrogenase/reductase family oxidoreductase  37.22 
 
 
253 aa  99  7e-20  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009727  CBUD_1145  short chain dehydrogenase  31.08 
 
 
321 aa  98.6  9e-20  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_010117  COXBURSA331_A1015  short chain dehydrogenase/reductase family oxidoreductase  30.91 
 
 
263 aa  98.6  1e-19  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_2775  short-chain dehydrogenase/reductase SDR  31.88 
 
 
238 aa  97.8  1e-19  Shewanella woodyi ATCC 51908  Bacteria  normal  0.88847  normal  0.739494 
 
 
-
 
NC_010622  Bphy_0185  short chain dehydrogenase  32.31 
 
 
256 aa  97.8  2e-19  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I0352  short chain dehydrogenase  34.03 
 
 
259 aa  97.4  2e-19  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_0407  short chain dehydrogenase  34.73 
 
 
259 aa  96.7  4e-19  Burkholderia pseudomallei 668  Bacteria  normal  0.317505  n/a   
 
 
-
 
NC_008577  Shewana3_1168  short-chain dehydrogenase/reductase SDR  32.41 
 
 
266 aa  96.3  4e-19  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_013501  Rmar_0194  short-chain dehydrogenase/reductase SDR  37.97 
 
 
233 aa  95.9  6e-19  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA0087  short chain dehydrogenase  34.31 
 
 
259 aa  95.9  6e-19  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0589  short chain dehydrogenase  34.31 
 
 
259 aa  95.9  6e-19  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_2288  short chain dehydrogenase  34.31 
 
 
259 aa  95.9  6e-19  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2000  short chain dehydrogenase  34.31 
 
 
259 aa  95.9  6e-19  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_013161  Cyan8802_0501  short-chain dehydrogenase/reductase SDR  33.5 
 
 
244 aa  95.9  6e-19  Cyanothece sp. PCC 8802  Bacteria  normal  hitchhiker  0.00365065 
 
 
-
 
NC_011726  PCC8801_0488  short-chain dehydrogenase/reductase SDR  33.5 
 
 
244 aa  95.9  6e-19  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008785  BMASAVP1_A3096  short chain dehydrogenase  34.31 
 
 
259 aa  95.9  6e-19  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_2712  short-chain dehydrogenase/reductase SDR  32.4 
 
 
275 aa  95.5  9e-19  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_13470  short chain dehydrogenase  31.48 
 
 
251 aa  95.1  1e-18  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_1178  short-chain dehydrogenase/reductase SDR  31.72 
 
 
239 aa  94.4  2e-18  Dickeya zeae Ech1591  Bacteria  normal  0.300792  n/a   
 
 
-
 
NC_009076  BURPS1106A_0427  short chain dehydrogenase  33.89 
 
 
259 aa  94.4  2e-18  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1167  short-chain dehydrogenase/reductase SDR  32.02 
 
 
266 aa  94  2e-18  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1238  short-chain dehydrogenase/reductase SDR  32.41 
 
 
266 aa  94.4  2e-18  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_1330  short-chain dehydrogenase/reductase SDR  36.13 
 
 
247 aa  94  2e-18  Gordonia bronchialis DSM 43247  Bacteria  normal  0.425796  n/a   
 
 
-
 
NC_004578  PSPTO_0601  oxidoreductase, short chain dehydrogenase/reductase family  34.25 
 
 
258 aa  92.8  6e-18  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_2888  Short-chain dehydrogenase/reductase SDR  36.41 
 
 
257 aa  92.8  6e-18  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.0119499 
 
 
-
 
NC_009767  Rcas_3908  short-chain dehydrogenase/reductase SDR  34.27 
 
 
272 aa  92  9e-18  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.106718  normal  0.186536 
 
 
-
 
NC_008554  Sfum_0522  short-chain dehydrogenase/reductase SDR  32.45 
 
 
278 aa  92  9e-18  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_2785  short chain dehydrogenase  36.09 
 
 
254 aa  91.7  1e-17  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.73728  normal  0.939169 
 
 
-
 
NC_011729  PCC7424_0301  short-chain dehydrogenase/reductase SDR  35.21 
 
 
305 aa  91.7  1e-17  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0783167 
 
 
-
 
NC_007493  RSP_0610  putative 3-oxoacyl-(acyl-carrier-protein) reductase  35.87 
 
 
268 aa  91.3  1e-17  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_014158  Tpau_2974  short-chain dehydrogenase/reductase SDR  39.09 
 
 
309 aa  91.7  1e-17  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0016  short-chain dehydrogenase/reductase SDR  33.92 
 
 
260 aa  92  1e-17  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_3034  short-chain dehydrogenase/reductase SDR  32.23 
 
 
249 aa  91.7  1e-17  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.377805  n/a   
 
 
-
 
NC_008639  Cpha266_0762  short-chain dehydrogenase/reductase SDR  29.85 
 
 
280 aa  91.3  1e-17  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_2904  short chain dehydrogenase  33.92 
 
 
261 aa  90.9  2e-17  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  hitchhiker  0.000166666  decreased coverage  0.000436169 
 
 
-
 
NC_011761  AFE_3307  short chain dehydrogenase  33.92 
 
 
261 aa  90.9  2e-17  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.0864591  n/a   
 
 
-
 
NC_007604  Synpcc7942_1596  short chain dehydrogenase  37.37 
 
 
245 aa  90.9  2e-17  Synechococcus elongatus PCC 7942  Bacteria  normal  normal  0.184756 
 
 
-
 
NC_008312  Tery_0205  short-chain dehydrogenase/reductase SDR  32.63 
 
 
257 aa  90.9  2e-17  Trichodesmium erythraeum IMS101  Bacteria  normal  0.76225  normal  0.242071 
 
 
-
 
NC_008726  Mvan_0852  short-chain dehydrogenase/reductase SDR  33.33 
 
 
286 aa  90.1  3e-17  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.068211 
 
 
-
 
NC_011884  Cyan7425_1650  short-chain dehydrogenase/reductase SDR  36.6 
 
 
254 aa  90.5  3e-17  Cyanothece sp. PCC 7425  Bacteria  normal  0.206138  normal 
 
 
-
 
NC_011726  PCC8801_0911  short chain dehydrogenase  34 
 
 
242 aa  90.5  3e-17  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_011989  Avi_0085  gluconate 5-dehydrogenase  31.67 
 
 
256 aa  90.1  4e-17  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_6048  short chain dehydrogenase  31.37 
 
 
266 aa  90.1  4e-17  Delftia acidovorans SPH-1  Bacteria  normal  0.549002  normal 
 
 
-
 
NC_014158  Tpau_3342  short-chain dehydrogenase/reductase SDR  33.48 
 
 
245 aa  89.4  6e-17  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.468783  n/a   
 
 
-
 
NC_007492  Pfl01_2470  Short-chain dehydrogenase/reductase SDR  31.58 
 
 
244 aa  89.4  6e-17  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_0799  short chain dehydrogenase/reductase family oxidoreductase  33.06 
 
 
266 aa  89.4  6e-17  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_2186  short-chain dehydrogenase/reductase SDR  33.33 
 
 
248 aa  89.4  6e-17  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.0361624 
 
 
-
 
NC_010552  BamMC406_3907  short-chain dehydrogenase/reductase SDR  33.04 
 
 
246 aa  89.4  6e-17  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.267776 
 
 
-
 
NC_013161  Cyan8802_0938  short chain dehydrogenase  33.5 
 
 
242 aa  89.4  7e-17  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_1329  short-chain dehydrogenase/reductase SDR  28.22 
 
 
238 aa  89  7e-17  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.371699  n/a   
 
 
-
 
NC_007973  Rmet_0099  short chain dehydrogenase  32.39 
 
 
265 aa  89  9e-17  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
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