More than 300 homologs were found in PanDaTox collection
for query gene Mext_1895 on replicon NC_010172
Organism: Methylobacterium extorquens PA1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010172  Mext_1895  response regulator receiver  100 
 
 
126 aa  254  3e-67  Methylobacterium extorquens PA1  Bacteria  normal  0.208302  normal 
 
 
-
 
NC_010172  Mext_3363  response regulator receiver  80.16 
 
 
126 aa  204  4e-52  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_6418  response regulator receiver protein  74.8 
 
 
126 aa  183  6e-46  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_4214  response regulator receiver protein  66.67 
 
 
130 aa  157  4e-38  Methylobacterium sp. 4-46  Bacteria  normal  0.843954  normal  0.213428 
 
 
-
 
NC_010172  Mext_0144  hypothetical protein  75.82 
 
 
118 aa  148  3e-35  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_1475  response regulator receiver protein  61.95 
 
 
124 aa  141  2e-33  Methylobacterium populi BJ001  Bacteria  normal  0.292646  normal  0.101486 
 
 
-
 
NC_011757  Mchl_0516  response regulator receiver protein  60.71 
 
 
124 aa  134  6.0000000000000005e-31  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.131947  normal 
 
 
-
 
NC_010725  Mpop_4593  response regulator receiver protein  61.34 
 
 
129 aa  133  8e-31  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_4480  response regulator receiver protein  61.06 
 
 
128 aa  125  2.0000000000000002e-28  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.361856  normal 
 
 
-
 
NC_007778  RPB_4041  response regulator receiver domain-containing protein  58.42 
 
 
124 aa  125  2.0000000000000002e-28  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0979956  normal 
 
 
-
 
NC_010172  Mext_4112  response regulator receiver  61.06 
 
 
128 aa  125  2.0000000000000002e-28  Methylobacterium extorquens PA1  Bacteria  normal  0.576276  normal  0.834365 
 
 
-
 
NC_010725  Mpop_0095  response regulator receiver protein  55.36 
 
 
123 aa  122  1e-27  Methylobacterium populi BJ001  Bacteria  normal  0.898425  normal 
 
 
-
 
NC_007958  RPD_3796  response regulator receiver  54.72 
 
 
124 aa  122  2e-27  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.787937 
 
 
-
 
NC_011004  Rpal_1668  response regulator receiver protein  54.87 
 
 
131 aa  119  9e-27  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_1228  response regulator receiver domain-containing protein  55.56 
 
 
124 aa  117  4.9999999999999996e-26  Rhodopseudomonas palustris BisB18  Bacteria  normal  hitchhiker  0.0000969205 
 
 
-
 
NC_011666  Msil_0850  response regulator receiver protein  51.28 
 
 
131 aa  115  1.9999999999999998e-25  Methylocella silvestris BL2  Bacteria  n/a    normal  0.886181 
 
 
-
 
NC_011666  Msil_3741  response regulator receiver protein  54.81 
 
 
127 aa  114  5e-25  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_011369  Rleg2_2670  response regulator receiver protein  46.02 
 
 
122 aa  111  3e-24  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.313891  normal 
 
 
-
 
NC_012850  Rleg_2931  response regulator receiver protein  46.02 
 
 
122 aa  110  5e-24  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.139057  normal 
 
 
-
 
NC_010505  Mrad2831_0691  response regulator receiver protein  53.92 
 
 
128 aa  110  9e-24  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.852187  normal  0.378672 
 
 
-
 
NC_011004  Rpal_4537  response regulator receiver protein  50.45 
 
 
125 aa  107  4.0000000000000004e-23  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_0328  response regulator receiver  47.22 
 
 
147 aa  104  4e-22  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0634669  normal 
 
 
-
 
NC_009511  Swit_4398  response regulator receiver protein  51 
 
 
127 aa  103  8e-22  Sphingomonas wittichii RW1  Bacteria  normal  0.481257  normal 
 
 
-
 
NC_010725  Mpop_4814  response regulator receiver protein  44.44 
 
 
127 aa  103  8e-22  Methylobacterium populi BJ001  Bacteria  normal  0.24379  normal  0.163877 
 
 
-
 
NC_010725  Mpop_3346  response regulator receiver protein  46.02 
 
 
128 aa  102  2e-21  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3150  response regulator receiver  45.13 
 
 
128 aa  102  2e-21  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_3474  response regulator receiver protein  45.13 
 
 
128 aa  102  2e-21  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.212338  normal 
 
 
-
 
NC_011894  Mnod_4811  response regulator receiver protein  45.61 
 
 
140 aa  102  2e-21  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_2634  response regulator receiver protein  46.55 
 
 
135 aa  102  2e-21  Methylobacterium sp. 4-46  Bacteria  normal  0.873964  normal  0.0480327 
 
 
-
 
NC_011757  Mchl_4665  response regulator receiver protein  42.06 
 
 
127 aa  101  3e-21  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.191751 
 
 
-
 
NC_007778  RPB_0497  response regulator receiver domain-containing protein  48.15 
 
 
125 aa  99.4  2e-20  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0614776  normal 
 
 
-
 
NC_010505  Mrad2831_2499  response regulator receiver protein  51.46 
 
 
136 aa  98.6  3e-20  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.353166  normal 
 
 
-
 
NC_007778  RPB_2945  response regulator receiver domain-containing protein  44.12 
 
 
124 aa  98.6  3e-20  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.161273  normal  0.393497 
 
 
-
 
NC_011984  Avi_9028  two component sensor kinase/response regulator hybrid  44.04 
 
 
123 aa  98.2  4e-20  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_1195  Two component sensor kinase/response regulator hybrid protein  44.55 
 
 
130 aa  97.8  5e-20  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_4296  response regulator receiver  41.23 
 
 
115 aa  95.9  2e-19  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_2794  response regulator receiver protein  45.45 
 
 
125 aa  94.4  5e-19  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_012850  Rleg_0771  response regulator receiver protein  44.12 
 
 
130 aa  93.6  9e-19  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_012853  Rleg_5645  response regulator receiver protein  45.79 
 
 
182 aa  93.6  9e-19  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.633042  normal 
 
 
-
 
NC_011894  Mnod_3607  response regulator receiver protein  42.73 
 
 
135 aa  90.1  9e-18  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.621989  n/a   
 
 
-
 
NC_009485  BBta_7425  putative response regulator receiver (CheY-like protein)  46 
 
 
133 aa  89.7  1e-17  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0404716 
 
 
-
 
NC_007958  RPD_2510  response regulator receiver  39.22 
 
 
124 aa  89  2e-17  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.294916 
 
 
-
 
NC_010511  M446_3963  response regulator receiver protein  42.73 
 
 
133 aa  89.4  2e-17  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.150847 
 
 
-
 
NC_010172  Mext_0851  response regulator receiver  37.39 
 
 
132 aa  88.2  4e-17  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.234035 
 
 
-
 
NC_010505  Mrad2831_2732  response regulator receiver protein  39.47 
 
 
151 aa  88.2  4e-17  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.169998 
 
 
-
 
NC_011757  Mchl_0810  response regulator receiver protein  37.39 
 
 
132 aa  88.2  4e-17  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.316292 
 
 
-
 
NC_012858  Rleg_6937  response regulator receiver protein  46.67 
 
 
133 aa  87.8  5e-17  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0671376  normal 
 
 
-
 
NC_010725  Mpop_0775  response regulator receiver protein  35.65 
 
 
132 aa  86.3  1e-16  Methylobacterium populi BJ001  Bacteria  normal  normal  0.0313977 
 
 
-
 
NC_010505  Mrad2831_0864  response regulator receiver protein  39.25 
 
 
129 aa  85.9  2e-16  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  hitchhiker  0.00632773 
 
 
-
 
NC_009507  Swit_5396  response regulator receiver protein  41.82 
 
 
132 aa  85.9  2e-16  Sphingomonas wittichii RW1  Bacteria  normal  0.476573  normal 
 
 
-
 
NC_010725  Mpop_2071  response regulator receiver protein  40.87 
 
 
124 aa  83.2  0.000000000000001  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_5033  response regulator receiver protein  38.6 
 
 
134 aa  83.2  0.000000000000001  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.649741  normal  0.0493927 
 
 
-
 
NC_010725  Mpop_5091  response regulator receiver protein  38.6 
 
 
134 aa  82.8  0.000000000000001  Methylobacterium populi BJ001  Bacteria  normal  0.947919  normal 
 
 
-
 
NC_010172  Mext_4573  response regulator receiver  38.6 
 
 
134 aa  83.2  0.000000000000001  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.546072 
 
 
-
 
NC_010172  Mext_1882  response regulator receiver  45.26 
 
 
108 aa  82.4  0.000000000000002  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_5228  response regulator receiver protein  34.23 
 
 
135 aa  82.8  0.000000000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0214459  normal  0.509013 
 
 
-
 
NC_010511  M446_6212  response regulator receiver protein  39.2 
 
 
177 aa  81.6  0.000000000000003  Methylobacterium sp. 4-46  Bacteria  normal  0.0392664  normal  0.598992 
 
 
-
 
NC_002947  PP_3969  response regulator  35.96 
 
 
120 aa  80.9  0.000000000000006  Pseudomonas putida KT2440  Bacteria  normal  normal  0.13044 
 
 
-
 
NC_012850  Rleg_1290  histidine kinase  43.52 
 
 
573 aa  79.3  0.00000000000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.163396  normal 
 
 
-
 
NC_010505  Mrad2831_5535  response regulator receiver protein  42.86 
 
 
130 aa  79.7  0.00000000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.591914  decreased coverage  0.00892468 
 
 
-
 
NC_011894  Mnod_7092  response regulator receiver protein  40.16 
 
 
196 aa  80.1  0.00000000000001  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.08524  n/a   
 
 
-
 
NC_011894  Mnod_7165  response regulator receiver protein  35.09 
 
 
143 aa  79.3  0.00000000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.272897  n/a   
 
 
-
 
NC_011369  Rleg2_1658  PAS/PAC sensor hybrid histidine kinase  40.95 
 
 
1036 aa  79  0.00000000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.705021 
 
 
-
 
NC_011369  Rleg2_1201  integral membrane sensor hybrid histidine kinase  43.52 
 
 
548 aa  79.3  0.00000000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.642458  normal 
 
 
-
 
NC_010725  Mpop_0314  response regulator receiver protein  38.18 
 
 
127 aa  77.8  0.00000000000004  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_6328  response regulator receiver protein  35.09 
 
 
141 aa  77.4  0.00000000000005  Methylobacterium sp. 4-46  Bacteria  normal  hitchhiker  0.00633094 
 
 
-
 
NC_010505  Mrad2831_5605  response regulator receiver protein  40.16 
 
 
198 aa  77.4  0.00000000000006  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.469743  normal 
 
 
-
 
NC_010510  Mrad2831_5790  response regulator receiver protein  41.59 
 
 
122 aa  77.4  0.00000000000006  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0889979  normal  0.112489 
 
 
-
 
NC_011365  Gdia_2320  response regulator receiver protein  42.57 
 
 
127 aa  77  0.00000000000008  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal  0.632565 
 
 
-
 
NC_010511  M446_6442  multi-sensor hybrid histidine kinase  39.64 
 
 
688 aa  77  0.00000000000009  Methylobacterium sp. 4-46  Bacteria  normal  0.381857  normal 
 
 
-
 
NC_007492  Pfl01_3529  response regulator receiver domain-containing protein  39.13 
 
 
137 aa  76.6  0.0000000000001  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.440569  normal  0.421617 
 
 
-
 
NC_011894  Mnod_0143  response regulator receiver protein  37.5 
 
 
130 aa  75.5  0.0000000000002  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.363881  n/a   
 
 
-
 
NC_010725  Mpop_2488  response regulator receiver protein  40.16 
 
 
173 aa  73.9  0.0000000000007  Methylobacterium populi BJ001  Bacteria  normal  0.365206  normal  0.13004 
 
 
-
 
NC_011071  Smal_1735  response regulator receiver protein  37.5 
 
 
119 aa  73.6  0.0000000000009  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.419682 
 
 
-
 
NC_011757  Mchl_2780  response regulator receiver protein  39.17 
 
 
173 aa  72.4  0.000000000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_2024  fused PAS sensor histidine kinase protein and response regulator  34.26 
 
 
1005 aa  72.8  0.000000000002  Psychromonas ingrahamii 37  Bacteria  decreased coverage  0.00627468  normal  0.216163 
 
 
-
 
NC_008783  BARBAKC583_0853  sensor histidine kinase/reponse regulator  39.02 
 
 
845 aa  72  0.000000000002  Bartonella bacilliformis KC583  Bacteria  decreased coverage  0.00134282  n/a   
 
 
-
 
NC_009485  BBta_7844  sensor histidine kinase  37.19 
 
 
529 aa  72.4  0.000000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.651552 
 
 
-
 
NC_010511  M446_4711  PAS/PAC sensor hybrid histidine kinase  40.87 
 
 
683 aa  72.4  0.000000000002  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_4092  response regulator receiver protein  39 
 
 
161 aa  72.4  0.000000000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011368  Rleg2_4740  response regulator receiver protein  38 
 
 
126 aa  72  0.000000000003  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_2989  response regulator receiver protein  33.33 
 
 
120 aa  72  0.000000000003  Pseudomonas putida GB-1  Bacteria  normal  normal  0.319214 
 
 
-
 
NC_010172  Mext_2557  response regulator receiver  38.33 
 
 
194 aa  71.6  0.000000000003  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_0073  response regulator receiver protein  37.61 
 
 
128 aa  71.2  0.000000000004  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_3778  response regulator receiver  37.39 
 
 
129 aa  71.2  0.000000000004  Methylobacterium extorquens PA1  Bacteria  normal  0.0998176  normal 
 
 
-
 
NC_010172  Mext_4170  response regulator receiver  38.53 
 
 
120 aa  71.2  0.000000000004  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_4539  response regulator receiver protein  38.53 
 
 
120 aa  71.2  0.000000000004  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.866024  normal 
 
 
-
 
NC_011757  Mchl_4072  response regulator receiver protein  37.39 
 
 
129 aa  71.2  0.000000000004  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_6162  PAS/PAC sensor hybrid histidine kinase  43.81 
 
 
673 aa  71.2  0.000000000005  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.30079  n/a   
 
 
-
 
NC_011894  Mnod_3507  PAS/PAC sensor hybrid histidine kinase  35.34 
 
 
662 aa  71.2  0.000000000005  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_4260  sensor histidine kinase/response regulator  32.74 
 
 
669 aa  70.9  0.000000000006  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_0366  GAF sensor hybrid histidine kinase  37.86 
 
 
618 aa  70.9  0.000000000006  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.425505  normal 
 
 
-
 
NC_010172  Mext_1672  PAS sensor protein  36.04 
 
 
695 aa  70.5  0.000000000007  Methylobacterium extorquens PA1  Bacteria  normal  0.487392  normal 
 
 
-
 
NC_011757  Mchl_1990  multi-sensor hybrid histidine kinase  36.04 
 
 
695 aa  70.5  0.000000000008  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_5841  PAS/PAC sensor hybrid histidine kinase  40.54 
 
 
887 aa  70.5  0.000000000008  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.111175 
 
 
-
 
NC_010505  Mrad2831_3211  PAS/PAC sensor hybrid histidine kinase  38.89 
 
 
696 aa  70.5  0.000000000008  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.7085  normal 
 
 
-
 
NC_010552  BamMC406_5047  PAS/PAC sensor hybrid histidine kinase  38.74 
 
 
589 aa  70.1  0.000000000009  Burkholderia ambifaria MC40-6  Bacteria  normal  0.153925  normal 
 
 
-
 
NC_010322  PputGB1_2991  response regulator receiver protein  39 
 
 
138 aa  69.7  0.00000000001  Pseudomonas putida GB-1  Bacteria  normal  normal  0.430733 
 
 
-
 
NC_009720  Xaut_2569  response regulator receiver protein  38 
 
 
132 aa  70.1  0.00000000001  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.929319 
 
 
-
 
NC_008391  Bamb_4524  PAS/PAC sensor hybrid histidine kinase  37.84 
 
 
589 aa  68.9  0.00000000002  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
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