223 homologs were found in PanDaTox collection
for query gene Mext_0109 on replicon NC_010172
Organism: Methylobacterium extorquens PA1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010172  Mext_0109  response regulator receiver  100 
 
 
120 aa  241  1.9999999999999999e-63  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_4798  response regulator receiver protein  94.17 
 
 
120 aa  227  5e-59  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.107601  normal 
 
 
-
 
NC_011894  Mnod_6449  response regulator receiver protein  58.33 
 
 
121 aa  133  9.999999999999999e-31  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010510  Mrad2831_6265  response regulator receiver protein  60.91 
 
 
136 aa  128  3e-29  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_4234  response regulator receiver protein  55 
 
 
121 aa  125  3e-28  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.0312747 
 
 
-
 
NC_011894  Mnod_3759  response regulator receiver protein  58.72 
 
 
127 aa  121  3e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.514361  n/a   
 
 
-
 
NC_010725  Mpop_1920  response regulator receiver protein  55.86 
 
 
126 aa  121  4e-27  Methylobacterium populi BJ001  Bacteria  normal  normal  0.170402 
 
 
-
 
NC_011757  Mchl_2241  response regulator receiver protein  50.83 
 
 
126 aa  120  5e-27  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.926249 
 
 
-
 
NC_010172  Mext_1965  response regulator receiver  50.83 
 
 
126 aa  120  7e-27  Methylobacterium extorquens PA1  Bacteria  normal  0.132523  normal 
 
 
-
 
NC_011004  Rpal_2363  response regulator receiver protein  48.33 
 
 
122 aa  119  1.9999999999999998e-26  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.549917  n/a   
 
 
-
 
NC_011368  Rleg2_5238  response regulator receiver protein  48.18 
 
 
127 aa  103  9e-22  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.516097  normal  0.262734 
 
 
-
 
NC_010511  M446_6401  response regulator receiver protein  47.47 
 
 
126 aa  102  1e-21  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011887  Mnod_7970  response regulator receiver and SARP domain protein  49.53 
 
 
160 aa  102  1e-21  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.304155  n/a   
 
 
-
 
NC_011894  Mnod_5707  response regulator receiver protein  47.47 
 
 
127 aa  101  3e-21  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6261  putative response regulator receiver (CheY-like protein)  42.99 
 
 
121 aa  100  5e-21  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.235266  normal  0.732793 
 
 
-
 
NC_011368  Rleg2_5235  response regulator receiver protein  42.37 
 
 
131 aa  99.8  1e-20  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.0801642 
 
 
-
 
NC_010505  Mrad2831_4846  response regulator receiver protein  47.9 
 
 
126 aa  96.7  1e-19  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.211413  normal 
 
 
-
 
NC_010338  Caul_0470  response regulator receiver protein  44.55 
 
 
133 aa  94.4  4e-19  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0773  response regulator receiver  46.22 
 
 
149 aa  92.8  1e-18  Methylobacterium extorquens PA1  Bacteria  normal  0.863112  normal 
 
 
-
 
NC_011757  Mchl_3092  response regulator receiver protein  48.15 
 
 
124 aa  92  2e-18  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0555687  normal  0.395265 
 
 
-
 
NC_010172  Mext_2866  response regulator receiver  47.22 
 
 
124 aa  90.9  5e-18  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010717  PXO_03021  regulatory protein  38.74 
 
 
126 aa  88.2  3e-17  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_011368  Rleg2_5233  putative transcriptional regulator, Crp/Fnr family  40.57 
 
 
384 aa  86.7  1e-16  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.222219 
 
 
-
 
NC_009720  Xaut_2532  response regulator receiver protein  39.29 
 
 
138 aa  85.9  2e-16  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_2986  response regulator receiver protein  42.57 
 
 
124 aa  85.9  2e-16  Methylobacterium populi BJ001  Bacteria  normal  0.347118  normal 
 
 
-
 
NC_009620  Smed_4933  response regulator receiver protein  38.89 
 
 
121 aa  85.1  3e-16  Sinorhizobium medicae WSM419  Bacteria  normal  0.124626  normal  0.430513 
 
 
-
 
NC_010172  Mext_4542  PAS sensor protein  43.56 
 
 
1096 aa  84  6e-16  Methylobacterium extorquens PA1  Bacteria  normal  0.220973  normal  0.0899725 
 
 
-
 
NC_011071  Smal_2183  response regulator receiver protein  41.41 
 
 
134 aa  83.2  0.000000000000001  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0019  response regulator receiver protein  38.18 
 
 
129 aa  82  0.000000000000002  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0611118 
 
 
-
 
NC_007493  RSP_1784  response regulator receiver domain-containing protein  45.54 
 
 
124 aa  81.6  0.000000000000003  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.474362  n/a   
 
 
-
 
NC_009049  Rsph17029_0431  response regulator receiver protein  45.54 
 
 
124 aa  82  0.000000000000003  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0769354  normal 
 
 
-
 
NC_009620  Smed_4279  response regulator receiver protein  42.73 
 
 
120 aa  81.6  0.000000000000003  Sinorhizobium medicae WSM419  Bacteria  normal  0.718019  normal 
 
 
-
 
NC_011894  Mnod_0022  response regulator receiver and SARP domain protein  38.18 
 
 
142 aa  81.6  0.000000000000004  Methylobacterium nodulans ORS 2060  Bacteria  hitchhiker  0.000346597  n/a   
 
 
-
 
NC_010725  Mpop_0475  response regulator receiver protein  37.07 
 
 
129 aa  81.3  0.000000000000004  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_5002  signal transduction histidine kinase  44.55 
 
 
1096 aa  80.5  0.000000000000007  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_007493  RSP_6064  response regulator receiver domain-containing protein  39.8 
 
 
126 aa  79  0.00000000000002  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_5055  signal transduction histidine kinase  42.57 
 
 
1111 aa  79.3  0.00000000000002  Methylobacterium populi BJ001  Bacteria  normal  0.372822  normal 
 
 
-
 
NC_008254  Meso_0621  response regulator receiver protein  35.4 
 
 
120 aa  78.2  0.00000000000004  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010338  Caul_0079  signal transduction histidine kinase  45.87 
 
 
639 aa  77.8  0.00000000000005  Caulobacter sp. K31  Bacteria  normal  normal  0.464916 
 
 
-
 
NC_010505  Mrad2831_2937  response regulator receiver protein  37.27 
 
 
129 aa  77.8  0.00000000000005  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.972944  normal 
 
 
-
 
NC_010581  Bind_0708  response regulator receiver protein  37.61 
 
 
123 aa  77.4  0.00000000000006  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.795364  normal  0.880104 
 
 
-
 
NC_010172  Mext_0407  response regulator receiver  36.21 
 
 
130 aa  77.4  0.00000000000007  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.459485 
 
 
-
 
NC_011757  Mchl_0440  response regulator receiver protein  36.21 
 
 
130 aa  77.4  0.00000000000007  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0544928  normal  0.588008 
 
 
-
 
NC_009049  Rsph17029_1334  response regulator receiver protein  40.21 
 
 
126 aa  77  0.00000000000007  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.395948 
 
 
-
 
NC_010501  PputW619_2574  response regulator receiver modulated GAF sensor protein  42.72 
 
 
844 aa  76.3  0.0000000000001  Pseudomonas putida W619  Bacteria  normal  normal  0.969915 
 
 
-
 
NC_009507  Swit_5270  signal transduction histidine kinase  39.05 
 
 
559 aa  76.6  0.0000000000001  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.909185 
 
 
-
 
NC_012850  Rleg_2608  response regulator receiver protein  42.31 
 
 
114 aa  75.5  0.0000000000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.186263  normal 
 
 
-
 
NC_007493  RSP_1262  response regulator receiver protein  37.17 
 
 
195 aa  75.9  0.0000000000002  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_3626  signal transduction histidine kinase  41.82 
 
 
792 aa  76.3  0.0000000000002  Methylobacterium sp. 4-46  Bacteria  normal  0.0746201  normal  0.0102319 
 
 
-
 
NC_011004  Rpal_1182  response regulator receiver modulated GAF sensor protein  44.04 
 
 
846 aa  75.9  0.0000000000002  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.75997  n/a   
 
 
-
 
NC_009049  Rsph17029_2922  response regulator receiver/SARP domain-containing protein  37.17 
 
 
195 aa  75.9  0.0000000000002  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_0604  response regulator receiver protein  41.58 
 
 
147 aa  75.9  0.0000000000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_2399  response regulator receiver protein  41.35 
 
 
128 aa  75.5  0.0000000000002  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.0186457 
 
 
-
 
NC_009719  Plav_0358  signal transduction histidine kinase  41.9 
 
 
602 aa  75.9  0.0000000000002  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_009428  Rsph17025_1215  response regulator receiver protein  39.8 
 
 
124 aa  75.1  0.0000000000003  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.0588681  normal  0.159144 
 
 
-
 
NC_009669  Oant_4458  putative GAF sensor protein  39.82 
 
 
844 aa  75.1  0.0000000000003  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_3180  response regulator receiver protein  37.27 
 
 
124 aa  74.3  0.0000000000005  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0167969  n/a   
 
 
-
 
NC_010505  Mrad2831_2089  response regulator receiver protein  44.55 
 
 
152 aa  73.9  0.0000000000006  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.775144 
 
 
-
 
NC_010581  Bind_1267  response regulator receiver/SARP domain-containing protein  33.96 
 
 
134 aa  73.9  0.0000000000006  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  decreased coverage  0.00862788 
 
 
-
 
NC_010725  Mpop_1296  response regulator receiver protein  41.28 
 
 
136 aa  73.9  0.0000000000007  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_1774  response regulator receiver  35.85 
 
 
126 aa  72.8  0.000000000001  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0498529  decreased coverage  0.00379005 
 
 
-
 
NC_010510  Mrad2831_6244  response regulator receiver modulated GAF sensor protein  41.82 
 
 
849 aa  73.2  0.000000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007959  Nham_4155  response regulator receiver domain-containing protein  32.71 
 
 
123 aa  73.2  0.000000000001  Nitrobacter hamburgensis X14  Bacteria  normal  0.918011  n/a   
 
 
-
 
NC_010581  Bind_3363  response regulator receiver protein  36.45 
 
 
133 aa  73.2  0.000000000001  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.387857 
 
 
-
 
NC_007958  RPD_2783  response regulator receiver  36.28 
 
 
123 aa  72.8  0.000000000002  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.636371 
 
 
-
 
NC_010338  Caul_1241  signal transduction histidine kinase  46.99 
 
 
631 aa  71.6  0.000000000003  Caulobacter sp. K31  Bacteria  normal  normal  0.0246477 
 
 
-
 
NC_009429  Rsph17025_3337  hypothetical protein  35.77 
 
 
130 aa  71.2  0.000000000004  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.244169  normal  0.34569 
 
 
-
 
NC_007925  RPC_2520  response regulator receiver domain-containing protein  35.85 
 
 
125 aa  70.9  0.000000000005  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.113297  normal  0.478353 
 
 
-
 
NC_009511  Swit_3435  response regulator receiver protein  40.19 
 
 
121 aa  71.2  0.000000000005  Sphingomonas wittichii RW1  Bacteria  normal  0.465011  normal  0.396609 
 
 
-
 
NC_007964  Nham_1793  response regulator receiver domain-containing protein  35.85 
 
 
126 aa  70.5  0.000000000007  Nitrobacter hamburgensis X14  Bacteria  normal  0.244756  n/a   
 
 
-
 
NC_009485  BBta_0251  hypothetical protein  38.89 
 
 
124 aa  70.5  0.000000000007  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_4411  putative response regulator receiver (CheY-like protein)  34.91 
 
 
131 aa  70.5  0.000000000007  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.514484 
 
 
-
 
NC_007778  RPB_2738  response regulator receiver domain-containing protein  34.91 
 
 
123 aa  70.1  0.000000000009  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.886685 
 
 
-
 
NC_009485  BBta_0677  putative two component-response regulator receiver (CheY-like protein)  39.8 
 
 
104 aa  69.7  0.00000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.339833 
 
 
-
 
NC_012850  Rleg_3289  putative PAS/PAC sensor protein  43.14 
 
 
855 aa  70.1  0.00000000001  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.363327  normal  0.145052 
 
 
-
 
NC_009507  Swit_5346  response regulator receiver protein  41.67 
 
 
118 aa  69.3  0.00000000001  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_0073  response regulator receiver protein  38.68 
 
 
144 aa  69.7  0.00000000001  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_2394  putative GAF sensor protein  38.24 
 
 
847 aa  69.3  0.00000000001  Pseudomonas putida F1  Bacteria  normal  0.25898  normal 
 
 
-
 
NC_009667  Oant_0114  response regulator receiver protein  39.81 
 
 
127 aa  70.1  0.00000000001  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.273159  n/a   
 
 
-
 
NC_004310  BR0102  response regulator, putative  37.04 
 
 
125 aa  68.9  0.00000000002  Brucella suis 1330  Bacteria  normal  0.248594  n/a   
 
 
-
 
NC_009485  BBta_6551  putative response regulator receiver (CheY-like protein)  30.43 
 
 
129 aa  68.9  0.00000000002  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.582154 
 
 
-
 
NC_009505  BOV_0099  putative response regulator  37.04 
 
 
124 aa  68.9  0.00000000002  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_2323  response regulator receiver protein  34.58 
 
 
121 aa  68.9  0.00000000002  Methylocella silvestris BL2  Bacteria  n/a    normal  0.03657 
 
 
-
 
NC_011984  Avi_9083  bacteriophytochrome protein  39.09 
 
 
856 aa  68.2  0.00000000003  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_2032  response regulator receiver protein  31.93 
 
 
125 aa  68.6  0.00000000003  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_3364  response regulator  37.25 
 
 
847 aa  67.8  0.00000000004  Pseudomonas putida KT2440  Bacteria  normal  normal  0.427552 
 
 
-
 
NC_010322  PputGB1_2586  response regulator receiver modulated GAF sensor protein  37.86 
 
 
847 aa  67.8  0.00000000005  Pseudomonas putida GB-1  Bacteria  normal  normal  0.251983 
 
 
-
 
NC_008048  Sala_1726  response regulator receiver protein  40.19 
 
 
115 aa  67.8  0.00000000005  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_3034  putative PAS/PAC sensor protein  42.16 
 
 
856 aa  67.8  0.00000000005  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0858916  normal 
 
 
-
 
NC_011369  Rleg2_1001  response regulator receiver protein  37.96 
 
 
120 aa  67.8  0.00000000005  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.283402  normal  0.269242 
 
 
-
 
NC_009719  Plav_2023  response regulator receiver protein  38.39 
 
 
159 aa  67.8  0.00000000005  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.0939204  normal  0.968357 
 
 
-
 
NC_011004  Rpal_5004  response regulator receiver protein  40.19 
 
 
118 aa  67.4  0.00000000006  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.325761  n/a   
 
 
-
 
NC_007794  Saro_1396  response regulator receiver domain-containing protein  39.39 
 
 
117 aa  67  0.00000000009  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.230809  n/a   
 
 
-
 
NC_007493  RSP_1629  response regulator receiver domain-containing protein  37.84 
 
 
129 aa  66.2  0.0000000001  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.324074  n/a   
 
 
-
 
NC_007406  Nwi_0556  response regulator receiver  36.89 
 
 
140 aa  65.5  0.0000000002  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.032469  normal 
 
 
-
 
NC_010338  Caul_4110  response regulator receiver protein  37.17 
 
 
127 aa  65.9  0.0000000002  Caulobacter sp. K31  Bacteria  hitchhiker  0.00730632  normal  0.59438 
 
 
-
 
NC_012850  Rleg_1154  response regulator receiver protein  36.11 
 
 
161 aa  65.5  0.0000000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_3299  response regulator receiver protein  37.11 
 
 
123 aa  65.5  0.0000000003  Methylocella silvestris BL2  Bacteria  n/a    hitchhiker  0.00414312 
 
 
-
 
NC_007964  Nham_0646  response regulator receiver domain-containing protein  38.83 
 
 
139 aa  65.1  0.0000000003  Nitrobacter hamburgensis X14  Bacteria  normal  0.452757  n/a   
 
 
-
 
NC_011369  Rleg2_1200  response regulator receiver protein  35.34 
 
 
126 aa  64.3  0.0000000006  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
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