More than 300 homologs were found in PanDaTox collection
for query gene Mchl_1259 on replicon NC_011757
Organism: Methylobacterium chloromethanicum CM4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011757  Mchl_1259  transcriptional regulator, LysR family  100 
 
 
300 aa  589  1e-167  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_4570  LysR family transcriptional regulator  83.89 
 
 
298 aa  498  1e-140  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_0395  LysR family transcriptional regulator  75.67 
 
 
315 aa  434  1e-120  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.662274 
 
 
-
 
NC_008709  Ping_2416  transcriptional regulator, substrate-binding of LysR family protein  43.62 
 
 
297 aa  241  1e-62  Psychromonas ingrahamii 37  Bacteria  decreased coverage  0.0000387203  decreased coverage  0.000000509864 
 
 
-
 
NC_011761  AFE_0761  transcriptional regulator, LysR family  43.43 
 
 
316 aa  232  6e-60  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.211674  n/a   
 
 
-
 
NC_011206  Lferr_0907  transcriptional regulator, LysR family  43.43 
 
 
302 aa  232  7.000000000000001e-60  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_2041  transcriptional regulator, LysR family  40.87 
 
 
301 aa  161  1e-38  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.416222 
 
 
-
 
NC_010725  Mpop_1092  transcriptional regulator, LysR family  40.43 
 
 
301 aa  159  7e-38  Methylobacterium populi BJ001  Bacteria  normal  0.0509948  normal  0.0429857 
 
 
-
 
NC_010172  Mext_1722  LysR substrate-binding  40 
 
 
301 aa  156  5.0000000000000005e-37  Methylobacterium extorquens PA1  Bacteria  normal  0.0793479  normal 
 
 
-
 
NC_009485  BBta_1272  LysR family transcriptional regulator  33.99 
 
 
295 aa  150  2e-35  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011988  Avi_5409  LysR family protein  37.34 
 
 
300 aa  144  2e-33  Agrobacterium vitis S4  Bacteria  normal  0.152867  n/a   
 
 
-
 
NC_012850  Rleg_4492  transcriptional regulator, LysR family  34.91 
 
 
306 aa  139  7.999999999999999e-32  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.957194 
 
 
-
 
NC_010623  Bphy_3176  LysR family transcriptional regulator  31.51 
 
 
304 aa  138  1e-31  Burkholderia phymatum STM815  Bacteria  normal  0.594001  normal 
 
 
-
 
NC_008463  PA14_02870  putative transcriptional regulator  35.94 
 
 
313 aa  137  2e-31  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.00238694 
 
 
-
 
NC_009656  PSPA7_0319  putative transcriptional regulator  36.3 
 
 
313 aa  136  5e-31  Pseudomonas aeruginosa PA7  Bacteria  normal  0.404994  n/a   
 
 
-
 
NC_010002  Daci_0548  LysR family transcriptional regulator  32.64 
 
 
316 aa  135  7.000000000000001e-31  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007509  Bcep18194_C6622  LysR family transcriptional regulator  33.05 
 
 
318 aa  134  9.999999999999999e-31  Burkholderia sp. 383  Bacteria  normal  0.536281  normal  0.255489 
 
 
-
 
NC_009654  Mmwyl1_3825  LysR family transcriptional regulator  29.87 
 
 
306 aa  134  1.9999999999999998e-30  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.363475 
 
 
-
 
NC_012880  Dd703_3236  transcriptional regulator, LysR family  31.93 
 
 
307 aa  134  1.9999999999999998e-30  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010512  Bcenmc03_6694  LysR family transcriptional regulator  32.22 
 
 
321 aa  131  1.0000000000000001e-29  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.32621 
 
 
-
 
NC_007973  Rmet_1185  LysR family transcriptional regulator  34.21 
 
 
310 aa  131  1.0000000000000001e-29  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.00000000537468  normal 
 
 
-
 
NC_010002  Daci_1590  LysR family transcriptional regulator  32.64 
 
 
302 aa  130  3e-29  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008544  Bcen2424_6218  LysR family transcriptional regulator  31.8 
 
 
321 aa  130  4.0000000000000003e-29  Burkholderia cenocepacia HI2424  Bacteria  normal  decreased coverage  0.00215178 
 
 
-
 
NC_007435  BURPS1710b_A2518  LysR family regulatory protein  30.74 
 
 
311 aa  130  4.0000000000000003e-29  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008062  Bcen_5851  LysR family transcriptional regulator  31.8 
 
 
321 aa  130  4.0000000000000003e-29  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.121988  n/a   
 
 
-
 
NC_009075  BURPS668_A1340  LysR family transcriptional regulator  30.61 
 
 
317 aa  129  5.0000000000000004e-29  Burkholderia pseudomallei 668  Bacteria  normal  0.875316  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1264  LysR family transcriptional regulator  30.61 
 
 
317 aa  129  6e-29  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A1293  LysR family transcriptional regulator  31.05 
 
 
320 aa  128  1.0000000000000001e-28  Ralstonia eutropha JMP134  Bacteria  decreased coverage  0.00171024  n/a   
 
 
-
 
NC_007511  Bcep18194_B1472  LysR family transcriptional regulator  29.8 
 
 
300 aa  127  2.0000000000000002e-28  Burkholderia sp. 383  Bacteria  normal  0.166956  normal  0.322339 
 
 
-
 
NC_011369  Rleg2_4202  transcriptional regulator, LysR family  32.33 
 
 
302 aa  127  2.0000000000000002e-28  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B4144  LysR family transcriptional regulator  31.74 
 
 
307 aa  127  3e-28  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1817  LysR family transcriptional regulator  32.03 
 
 
310 aa  127  3e-28  Polaromonas sp. JS666  Bacteria  normal  0.330978  hitchhiker  0.00360584 
 
 
-
 
NC_011369  Rleg2_1679  transcriptional regulator, LysR family  33.48 
 
 
316 aa  126  4.0000000000000003e-28  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.409194  normal  0.896834 
 
 
-
 
NC_007778  RPB_0140  LysR family transcriptional regulator  32.99 
 
 
300 aa  126  4.0000000000000003e-28  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.273009  normal 
 
 
-
 
NC_008786  Veis_0178  LysR family transcriptional regulator  34.24 
 
 
303 aa  126  5e-28  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.758946 
 
 
-
 
NC_011365  Gdia_0223  transcriptional regulator, LysR family  34.63 
 
 
308 aa  124  2e-27  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal  0.0239924 
 
 
-
 
NC_007005  Psyr_2268  regulatory protein, LysR:LysR, substrate-binding  30.31 
 
 
302 aa  124  2e-27  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.170931  normal  0.112201 
 
 
-
 
NC_011989  Avi_3548  transcriptional regulator LysR family  32.62 
 
 
318 aa  124  2e-27  Agrobacterium vitis S4  Bacteria  normal  0.280114  n/a   
 
 
-
 
NC_010505  Mrad2831_4382  LysR family transcriptional regulator  32.38 
 
 
300 aa  124  2e-27  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_2826  LysR family transcriptional regulator  32.87 
 
 
302 aa  124  2e-27  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.123766 
 
 
-
 
NC_010678  Rpic_3921  transcriptional regulator, LysR family  31 
 
 
305 aa  123  3e-27  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_4035  transcriptional regulator, LysR family  31 
 
 
305 aa  123  3e-27  Ralstonia pickettii 12D  Bacteria  normal  0.176512  normal 
 
 
-
 
NC_004578  PSPTO_2577  transcriptional regulator, LysR family  30.31 
 
 
297 aa  123  4e-27  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.216536  n/a   
 
 
-
 
NC_011894  Mnod_5497  transcriptional regulator, LysR family  28.57 
 
 
316 aa  122  5e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.315237  n/a   
 
 
-
 
NC_012791  Vapar_1674  transcriptional regulator, LysR family  33.77 
 
 
312 aa  122  5e-27  Variovorax paradoxus S110  Bacteria  normal  0.247325  n/a   
 
 
-
 
NC_010552  BamMC406_3790  LysR family transcriptional regulator  32.35 
 
 
307 aa  122  9.999999999999999e-27  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.98544 
 
 
-
 
NC_008391  Bamb_3263  LysR family transcriptional regulator  32.35 
 
 
307 aa  121  9.999999999999999e-27  Burkholderia ambifaria AMMD  Bacteria  normal  0.266954  normal  0.470905 
 
 
-
 
NC_012848  Rleg_4662  transcriptional regulator, LysR family  33.62 
 
 
329 aa  120  1.9999999999999998e-26  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011988  Avi_5640  transcriptional regulator LysR family  32.37 
 
 
300 aa  119  4.9999999999999996e-26  Agrobacterium vitis S4  Bacteria  normal  0.203557  n/a   
 
 
-
 
NC_008709  Ping_0418  transcriptional regulator of LysR family protein  51.75 
 
 
120 aa  119  7e-26  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.0250154 
 
 
-
 
NC_012791  Vapar_0711  transcriptional regulator, LysR family  30.9 
 
 
304 aa  119  7.999999999999999e-26  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_4825  LysR family transcriptional regulator  30.64 
 
 
303 aa  118  9.999999999999999e-26  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.861271  normal  0.185461 
 
 
-
 
NC_010676  Bphyt_4629  transcriptional regulator, LysR family  32.89 
 
 
332 aa  118  9.999999999999999e-26  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.31234 
 
 
-
 
NC_008786  Veis_4735  LysR family transcriptional regulator  30.64 
 
 
305 aa  117  1.9999999999999998e-25  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.52327  normal 
 
 
-
 
NC_007963  Csal_0659  LysR family transcriptional regulator  32.75 
 
 
314 aa  115  6.9999999999999995e-25  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_1338  putative transcriptional regulator  32.75 
 
 
311 aa  115  7.999999999999999e-25  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_15210  LysR family transcriptional regulator  32.75 
 
 
311 aa  115  7.999999999999999e-25  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.017601  hitchhiker  0.00000000286911 
 
 
-
 
NC_011894  Mnod_3652  transcriptional regulator, LysR family  33.04 
 
 
301 aa  115  1.0000000000000001e-24  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0887356  n/a   
 
 
-
 
NC_010002  Daci_0778  LysR family transcriptional regulator  33.1 
 
 
306 aa  113  4.0000000000000004e-24  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_3187  LysR family transcriptional regulator  28.57 
 
 
307 aa  113  4.0000000000000004e-24  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B5121  regulatory protein, LysR:LysR, substrate-binding  30 
 
 
306 aa  112  8.000000000000001e-24  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_1158  LysR family transcriptional regulator  31.94 
 
 
301 aa  112  8.000000000000001e-24  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_2072  transcriptional regulator, LysR family  33.59 
 
 
305 aa  112  8.000000000000001e-24  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.0751025 
 
 
-
 
NC_008786  Veis_3501  LysR family transcriptional regulator  36.7 
 
 
304 aa  112  1.0000000000000001e-23  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.829127  normal  0.0458146 
 
 
-
 
NC_010508  Bcenmc03_1568  LysR family transcriptional regulator  29.33 
 
 
317 aa  111  1.0000000000000001e-23  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.841213  normal  0.890695 
 
 
-
 
NC_008542  Bcen2424_1591  LysR family transcriptional regulator  29.33 
 
 
324 aa  111  1.0000000000000001e-23  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0175342  n/a   
 
 
-
 
NC_008060  Bcen_1111  LysR family transcriptional regulator  29.33 
 
 
317 aa  111  1.0000000000000001e-23  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_6176  transcriptional regulator, LysR family  30.77 
 
 
320 aa  111  1.0000000000000001e-23  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_010084  Bmul_1646  LysR family transcriptional regulator  28.67 
 
 
317 aa  111  2.0000000000000002e-23  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_0419  transcriptional regulators, LysR family protein  35.39 
 
 
177 aa  109  4.0000000000000004e-23  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.0271253 
 
 
-
 
NC_010625  Bphy_6698  LysR family transcriptional regulator  30.43 
 
 
310 aa  109  5e-23  Burkholderia phymatum STM815  Bacteria  normal  0.526973  normal 
 
 
-
 
NC_007347  Reut_A1656  regulatory protein, LysR:LysR, substrate-binding  30.66 
 
 
321 aa  109  6e-23  Ralstonia eutropha JMP134  Bacteria  normal  0.227102  n/a   
 
 
-
 
NC_007005  Psyr_3526  regulatory protein, LysR:LysR, substrate-binding  28.27 
 
 
301 aa  109  7.000000000000001e-23  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.33739  normal  0.82105 
 
 
-
 
NC_007650  BTH_II2256  LysR family transcriptional regulator  29.13 
 
 
333 aa  108  8.000000000000001e-23  Burkholderia thailandensis E264  Bacteria  normal  0.585656  n/a   
 
 
-
 
NC_012880  Dd703_3501  transcriptional regulator, LysR family  31.39 
 
 
310 aa  108  9.000000000000001e-23  Dickeya dadantii Ech703  Bacteria  normal  0.7374  n/a   
 
 
-
 
NC_010511  M446_2975  LysR family transcriptional regulator  30.93 
 
 
297 aa  108  1e-22  Methylobacterium sp. 4-46  Bacteria  normal  0.819316  normal  0.0269268 
 
 
-
 
NC_010681  Bphyt_1765  transcriptional regulator, LysR family  28.29 
 
 
320 aa  108  1e-22  Burkholderia phytofirmans PsJN  Bacteria  normal  0.348978  normal 
 
 
-
 
NC_012880  Dd703_2928  transcriptional regulator, LysR family  30.49 
 
 
309 aa  108  1e-22  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_008390  Bamb_1487  LysR family transcriptional regulator  27.67 
 
 
317 aa  108  1e-22  Burkholderia ambifaria AMMD  Bacteria  normal  0.235813  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1297  LysR family transcriptional regulator  29.13 
 
 
318 aa  107  2e-22  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2943  LysR family transcriptional regulator  29.13 
 
 
326 aa  107  2e-22  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A4729  LysR family transcriptional regulator  28.33 
 
 
317 aa  107  2e-22  Burkholderia sp. 383  Bacteria  normal  0.417319  normal  0.651457 
 
 
-
 
NC_009075  BURPS668_A3069  LysR family transcriptional regulator  29.13 
 
 
318 aa  107  2e-22  Burkholderia pseudomallei 668  Bacteria  normal  0.227283  n/a   
 
 
-
 
NC_009485  BBta_5126  LysR family transcriptional regulator  28.28 
 
 
319 aa  106  5e-22  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.255501  normal  0.155944 
 
 
-
 
NC_010551  BamMC406_1507  LysR family transcriptional regulator  27.67 
 
 
317 aa  105  6e-22  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_3756  LysR family transcriptional regulator  28.01 
 
 
301 aa  105  7e-22  Jannaschia sp. CCS1  Bacteria  normal  0.231956  normal 
 
 
-
 
NC_007948  Bpro_1720  LysR family transcriptional regulator  29.57 
 
 
304 aa  105  1e-21  Polaromonas sp. JS666  Bacteria  normal  normal  0.501523 
 
 
-
 
NC_012912  Dd1591_3118  transcriptional regulator, LysR family  29.46 
 
 
313 aa  105  1e-21  Dickeya zeae Ech1591  Bacteria  normal  0.752623  n/a   
 
 
-
 
NC_008044  TM1040_0513  LysR family transcriptional regulator  33.19 
 
 
302 aa  104  2e-21  Ruegeria sp. TM1040  Bacteria  normal  0.810346  normal  0.24806 
 
 
-
 
NC_004578  PSPTO_1879  transcriptional regulator, LysR family  27.43 
 
 
283 aa  103  3e-21  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0397318  n/a   
 
 
-
 
NC_008752  Aave_3122  LysR family transcriptional regulator  30 
 
 
315 aa  103  3e-21  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_5122  transcriptional regulator, LysR family  29.69 
 
 
298 aa  101  1e-20  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007336  Reut_C6370  LysR family transcriptional regulator  25.44 
 
 
309 aa  100  2e-20  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B5280  LysR family transcriptional regulator  24.39 
 
 
318 aa  101  2e-20  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_1239  transcriptional regulator, LysR family  37.81 
 
 
307 aa  101  2e-20  Methylobacterium populi BJ001  Bacteria  normal  0.138802  normal  0.188644 
 
 
-
 
NC_012912  Dd1591_3624  transcriptional regulator, LysR family  32.81 
 
 
310 aa  101  2e-20  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_4630  LysR family transcriptional regulator  26.55 
 
 
302 aa  100  3e-20  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_1704  LysR family transcriptional regulator  29.2 
 
 
307 aa  100  4e-20  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.407381  n/a   
 
 
-
 
NC_013093  Amir_3128  transcriptional regulator, LysR family  32.64 
 
 
309 aa  99.4  6e-20  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_010335  Caul_5289  LysR family transcriptional regulator  28.08 
 
 
302 aa  99  9e-20  Caulobacter sp. K31  Bacteria  normal  0.127771  normal  0.048203 
 
 
-
 
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