More than 300 homologs were found in PanDaTox collection
for query gene M446_1938 on replicon NC_010511
Organism: Methylobacterium sp. 4-46



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010511  M446_1938  3-isopropylmalate dehydratase, large subunit  100 
 
 
468 aa  931    Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_5998  isopropylmalate isomerase large subunit  67.39 
 
 
473 aa  630  1e-179  Bradyrhizobium sp. BTAi1  Bacteria  normal  decreased coverage  0.00498287 
 
 
-
 
NC_007802  Jann_3761  isopropylmalate isomerase large subunit  64.29 
 
 
466 aa  585  1e-166  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_009484  Acry_2149  isopropylmalate isomerase large subunit  61.47 
 
 
466 aa  568  1e-161  Acidiphilium cryptum JF-5  Bacteria  normal  0.754808  n/a   
 
 
-
 
NC_011365  Gdia_3280  isopropylmalate isomerase large subunit  62.2 
 
 
467 aa  566  1e-160  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.215534  normal 
 
 
-
 
NC_009952  Dshi_0695  isopropylmalate isomerase large subunit  61.99 
 
 
464 aa  562  1.0000000000000001e-159  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A1189  isopropylmalate isomerase large subunit  58.41 
 
 
472 aa  559  1e-158  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.672672  n/a   
 
 
-
 
NC_011901  Tgr7_1245  isopropylmalate isomerase large subunit  61.16 
 
 
470 aa  553  1e-156  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.923179  n/a   
 
 
-
 
NC_011757  Mchl_4757  isopropylmalate isomerase large subunit  60.39 
 
 
469 aa  545  1e-154  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0194  3-isopropylmalate dehydratase, large subunit  59.74 
 
 
469 aa  547  1e-154  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010172  Mext_4355  isopropylmalate isomerase large subunit  60.39 
 
 
480 aa  546  1e-154  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_1423  3-isopropylmalate dehydratase, large subunit  56.81 
 
 
473 aa  545  1e-154  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_007794  Saro_1170  isopropylmalate isomerase large subunit  58.99 
 
 
478 aa  540  9.999999999999999e-153  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.910867  n/a   
 
 
-
 
NC_011894  Mnod_2261  3-isopropylmalate dehydratase, large subunit  62.07 
 
 
472 aa  541  9.999999999999999e-153  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_002977  MCA2065  isopropylmalate isomerase large subunit  60.3 
 
 
470 aa  537  1e-151  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_4707  isopropylmalate isomerase large subunit  57.47 
 
 
479 aa  536  1e-151  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.9984 
 
 
-
 
NC_007614  Nmul_A1921  isopropylmalate isomerase large subunit  58.67 
 
 
469 aa  535  1e-151  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.724454  n/a   
 
 
-
 
NC_009355  OSTLU_28677  predicted protein  57.36 
 
 
722 aa  534  1e-150  Ostreococcus lucimarinus CCE9901  Eukaryota  normal  n/a   
 
 
-
 
NC_007404  Tbd_1922  isopropylmalate isomerase large subunit  60 
 
 
467 aa  532  1e-150  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_0240  isopropylmalate isomerase large subunit  58.8 
 
 
469 aa  534  1e-150  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_0764  isopropylmalate isomerase large subunit  58.96 
 
 
470 aa  533  1e-150  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.266094 
 
 
-
 
NC_010725  Mpop_4879  isopropylmalate isomerase large subunit  59.52 
 
 
469 aa  534  1e-150  Methylobacterium populi BJ001  Bacteria  normal  0.29662  normal  0.101077 
 
 
-
 
NC_008048  Sala_2129  isopropylmalate isomerase large subunit  60.97 
 
 
476 aa  532  1e-150  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1416  isopropylmalate isomerase large subunit  59.52 
 
 
470 aa  530  1e-149  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.941586  n/a   
 
 
-
 
NC_011666  Msil_0636  3-isopropylmalate dehydratase, large subunit  59.31 
 
 
468 aa  530  1e-149  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0643204 
 
 
-
 
NC_004310  BR1906  isopropylmalate isomerase large subunit  58.84 
 
 
469 aa  531  1e-149  Brucella suis 1330  Bacteria  normal  0.276241  n/a   
 
 
-
 
NC_007406  Nwi_2785  isopropylmalate isomerase large subunit  58.24 
 
 
468 aa  531  1e-149  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.378068  normal 
 
 
-
 
NC_010581  Bind_2103  3-isopropylmalate dehydratase, large subunit  58.97 
 
 
470 aa  529  1e-149  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.0775087  normal 
 
 
-
 
NC_013889  TK90_1343  3-isopropylmalate dehydratase, large subunit  58.48 
 
 
470 aa  528  1e-149  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.444862 
 
 
-
 
NC_009505  BOV_1834  isopropylmalate isomerase large subunit  58.84 
 
 
469 aa  531  1e-149  Brucella ovis ATCC 25840  Bacteria  normal  0.538456  n/a   
 
 
-
 
BN001301  ANIA_05886  alpha isopropylmalate isomerase (Eurofung)  55.91 
 
 
772 aa  527  1e-148  Aspergillus nidulans FGSC A4  Eukaryota  decreased coverage  0.00198619  normal  0.994666 
 
 
-
 
NC_008825  Mpe_A2164  isopropylmalate isomerase large subunit  58.33 
 
 
479 aa  525  1e-148  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.170701 
 
 
-
 
NC_011369  Rleg2_3759  isopropylmalate isomerase large subunit  56.99 
 
 
469 aa  527  1e-148  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_0348  isopropylmalate isomerase large subunit  58.44 
 
 
470 aa  527  1e-148  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_4084  isopropylmalate isomerase large subunit  56.99 
 
 
469 aa  527  1e-148  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.774814  normal 
 
 
-
 
NC_007958  RPD_0504  isopropylmalate isomerase large subunit  57.88 
 
 
470 aa  526  1e-148  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_0861  isopropylmalate isomerase large subunit  56.22 
 
 
471 aa  523  1e-147  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007925  RPC_0227  isopropylmalate isomerase large subunit  57.79 
 
 
473 aa  523  1e-147  Rhodopseudomonas palustris BisB18  Bacteria  normal  hitchhiker  0.00400027 
 
 
-
 
NC_008340  Mlg_1228  isopropylmalate isomerase large subunit  58.66 
 
 
469 aa  523  1e-147  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.0896395 
 
 
-
 
NC_008789  Hhal_1812  isopropylmalate isomerase large subunit  59.48 
 
 
466 aa  523  1e-147  Halorhodospira halophila SL1  Bacteria  normal  0.364535  n/a   
 
 
-
 
NC_009636  Smed_3059  isopropylmalate isomerase large subunit  58.06 
 
 
469 aa  522  1e-147  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_1591  isopropylmalate isomerase large subunit  60.57 
 
 
473 aa  522  1e-147  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.777227 
 
 
-
 
NC_010511  M446_0819  isopropylmalate isomerase large subunit  59.09 
 
 
470 aa  525  1e-147  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_008835  BMA10229_1849  isopropylmalate isomerase large subunit  57.17 
 
 
469 aa  519  1e-146  Burkholderia mallei NCTC 10229  Bacteria  normal  0.0604506  n/a   
 
 
-
 
NC_006349  BMAA1729  isopropylmalate isomerase large subunit  57.17 
 
 
469 aa  519  1e-146  Burkholderia mallei ATCC 23344  Bacteria  normal  0.405505  n/a   
 
 
-
 
NC_006670  CNA02270  3-isopropylmalate dehydratase, putative  54.07 
 
 
762 aa  521  1e-146  Cryptococcus neoformans var. neoformans JEC21  Eukaryota  normal  0.0205062  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2316  isopropylmalate isomerase large subunit  57.39 
 
 
469 aa  520  1e-146  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0778  isopropylmalate isomerase large subunit  57.39 
 
 
479 aa  520  1e-146  Burkholderia pseudomallei 1710b  Bacteria  hitchhiker  0.000809283  n/a   
 
 
-
 
NC_009075  BURPS668_A2454  isopropylmalate isomerase large subunit  57.39 
 
 
469 aa  520  1e-146  Burkholderia pseudomallei 668  Bacteria  normal  0.0296584  n/a   
 
 
-
 
NC_007650  BTH_II0672  isopropylmalate isomerase large subunit  56.96 
 
 
469 aa  519  1e-146  Burkholderia thailandensis E264  Bacteria  hitchhiker  0.00206744  n/a   
 
 
-
 
NC_009485  BBta_0363  isopropylmalate isomerase large subunit  58.44 
 
 
468 aa  521  1e-146  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.271446  normal  0.532793 
 
 
-
 
NC_007964  Nham_3584  isopropylmalate isomerase large subunit  58.1 
 
 
468 aa  518  1e-146  Nitrobacter hamburgensis X14  Bacteria  normal  0.931395  n/a   
 
 
-
 
NC_009079  BMA10247_A0520  isopropylmalate isomerase large subunit  57.17 
 
 
469 aa  519  1e-146  Burkholderia mallei NCTC 10247  Bacteria  normal  0.643053  n/a   
 
 
-
 
NC_009667  Oant_0947  isopropylmalate isomerase large subunit  57.2 
 
 
469 aa  521  1e-146  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1641  isopropylmalate isomerase large subunit  57.17 
 
 
469 aa  519  1e-146  Burkholderia mallei SAVP1  Bacteria  normal  0.159625  n/a   
 
 
-
 
NC_008576  Mmc1_1779  3-isopropylmalate dehydratase, large subunit  57.67 
 
 
467 aa  521  1e-146  Magnetococcus sp. MC-1  Bacteria  normal  hitchhiker  0.00189563 
 
 
-
 
NC_010086  Bmul_4630  isopropylmalate isomerase large subunit  56.39 
 
 
477 aa  518  1e-146  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_010552  BamMC406_3844  isopropylmalate isomerase large subunit  56.75 
 
 
469 aa  514  1.0000000000000001e-145  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.777096 
 
 
-
 
NC_011206  Lferr_0775  isopropylmalate isomerase large subunit  58.19 
 
 
470 aa  516  1.0000000000000001e-145  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_010159  YpAngola_A2938  isopropylmalate isomerase large subunit  56.34 
 
 
476 aa  515  1.0000000000000001e-145  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B2133  isopropylmalate isomerase large subunit  56.53 
 
 
469 aa  516  1.0000000000000001e-145  Burkholderia sp. 383  Bacteria  normal  normal  0.0241304 
 
 
-
 
NC_009708  YpsIP31758_3407  isopropylmalate isomerase large subunit  56.34 
 
 
476 aa  515  1.0000000000000001e-145  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_3463  3-isopropylmalate dehydratase, large subunit  60 
 
 
465 aa  516  1.0000000000000001e-145  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0762821  n/a   
 
 
-
 
NC_011761  AFE_0624  isopropylmalate isomerase large subunit  58.19 
 
 
470 aa  516  1.0000000000000001e-145  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_3537  isopropylmalate isomerase large subunit  56.34 
 
 
476 aa  515  1.0000000000000001e-145  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_3340  isopropylmalate isomerase large subunit  56.75 
 
 
469 aa  514  1.0000000000000001e-145  Burkholderia ambifaria AMMD  Bacteria  normal  0.184073  normal  0.862322 
 
 
-
 
NC_011989  Avi_4223  isopropylmalate isomerase large subunit  56.68 
 
 
469 aa  516  1.0000000000000001e-145  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008740  Maqu_1565  isopropylmalate isomerase large subunit  57.91 
 
 
472 aa  516  1.0000000000000001e-145  Marinobacter aquaeolei VT8  Bacteria  normal  0.046679  n/a   
 
 
-
 
NC_010676  Bphyt_6850  isopropylmalate isomerase large subunit  56.32 
 
 
469 aa  513  1e-144  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.670748 
 
 
-
 
NC_010623  Bphy_4367  isopropylmalate isomerase large subunit  56.53 
 
 
469 aa  513  1e-144  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_1980  isopropylmalate isomerase large subunit  58.21 
 
 
480 aa  512  1e-144  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_3579  isopropylmalate isomerase large subunit  56.32 
 
 
469 aa  514  1e-144  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.482085  normal  0.399315 
 
 
-
 
NC_007952  Bxe_B2889  isopropylmalate isomerase large subunit  56.32 
 
 
469 aa  512  1e-144  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_009511  Swit_2316  3-isopropylmalate dehydratase, large subunit  59.79 
 
 
480 aa  514  1e-144  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.0965913 
 
 
-
 
NC_008061  Bcen_4418  isopropylmalate isomerase large subunit  56.32 
 
 
469 aa  514  1e-144  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_0158  isopropylmalate isomerase large subunit  56.62 
 
 
472 aa  512  1e-144  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_3448  isopropylmalate isomerase large subunit  57.45 
 
 
469 aa  512  1e-144  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_2225  3-isopropylmalate dehydratase, large subunit  58.96 
 
 
471 aa  511  1e-144  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.918253  n/a   
 
 
-
 
NC_008543  Bcen2424_3949  isopropylmalate isomerase large subunit  56.32 
 
 
469 aa  514  1e-144  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.373197 
 
 
-
 
NC_010531  Pnec_1057  isopropylmalate isomerase large subunit  54.94 
 
 
469 aa  512  1e-144  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  0.960077  normal  0.219462 
 
 
-
 
NC_009767  Rcas_1549  isopropylmalate isomerase large subunit  57.87 
 
 
472 aa  512  1e-144  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.269438  normal  0.14031 
 
 
-
 
NC_009379  Pnuc_0764  isopropylmalate isomerase large subunit  55.15 
 
 
469 aa  510  1e-143  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_007484  Noc_2935  isopropylmalate isomerase large subunit  56.13 
 
 
469 aa  509  1e-143  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1898  isopropylmalate isomerase large subunit  58.03 
 
 
480 aa  511  1e-143  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_3621  isopropylmalate isomerase large subunit  61.22 
 
 
465 aa  510  1e-143  Frankia sp. CcI3  Bacteria  normal  normal  0.766514 
 
 
-
 
NC_007947  Mfla_1705  isopropylmalate isomerase large subunit  56.01 
 
 
468 aa  511  1e-143  Methylobacillus flagellatus KT  Bacteria  normal  0.0785429  hitchhiker  0.00273209 
 
 
-
 
NC_011891  A2cp1_1983  isopropylmalate isomerase large subunit  58.03 
 
 
480 aa  510  1e-143  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_1821  isopropylmalate isomerase large subunit  56.22 
 
 
469 aa  511  1e-143  Ralstonia pickettii 12D  Bacteria  normal  0.626663  normal  0.539563 
 
 
-
 
NC_007973  Rmet_2475  isopropylmalate isomerase large subunit  54.82 
 
 
469 aa  511  1e-143  Cupriavidus metallidurans CH34  Bacteria  normal  0.891959  normal  0.311686 
 
 
-
 
NC_008009  Acid345_2916  isopropylmalate isomerase large subunit  57.02 
 
 
470 aa  510  1e-143  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_013412  GYMC61_3567  isopropylmalate isomerase large subunit  55.48 
 
 
477 aa  511  1e-143  Geobacillus sp. Y412MC61  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_4053  3-isopropylmalate dehydratase, large subunit  59.52 
 
 
474 aa  510  1e-143  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc1990  isopropylmalate isomerase large subunit  56.32 
 
 
469 aa  507  9.999999999999999e-143  Ralstonia solanacearum GMI1000  Bacteria  normal  0.508129  normal  0.146532 
 
 
-
 
NC_011205  SeD_A0120  isopropylmalate isomerase large subunit  56.16 
 
 
466 aa  506  9.999999999999999e-143  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A2314  isopropylmalate isomerase large subunit  55.46 
 
 
469 aa  506  9.999999999999999e-143  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2523  isopropylmalate isomerase large subunit  56.65 
 
 
475 aa  507  9.999999999999999e-143  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.520601  normal 
 
 
-
 
NC_010682  Rpic_2145  isopropylmalate isomerase large subunit  55.79 
 
 
469 aa  507  9.999999999999999e-143  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A0123  isopropylmalate isomerase large subunit  56.16 
 
 
466 aa  505  9.999999999999999e-143  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.610682  normal  0.713431 
 
 
-
 
NC_011149  SeAg_B0127  isopropylmalate isomerase large subunit  56.16 
 
 
466 aa  506  9.999999999999999e-143  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C0122  isopropylmalate isomerase large subunit  56.16 
 
 
466 aa  505  9.999999999999999e-143  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.924094  normal  0.160243 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>