51 homologs were found in PanDaTox collection
for query gene Lreu_1156 on replicon NC_009513
Organism: Lactobacillus reuteri DSM 20016



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009513  Lreu_1156  putative DNA-binding protein  100 
 
 
113 aa  228  2e-59  Lactobacillus reuteri DSM 20016  Bacteria  hitchhiker  0.000000235308  n/a   
 
 
-
 
NC_008532  STER_0914  putative DNA-binding protein  61.26 
 
 
110 aa  129  1.0000000000000001e-29  Streptococcus thermophilus LMD-9  Bacteria  hitchhiker  0.00185411  n/a   
 
 
-
 
NC_004116  SAG0983  putative DNA-binding protein  60.36 
 
 
110 aa  124  3e-28  Streptococcus agalactiae 2603V/R  Bacteria  normal  0.584872  n/a   
 
 
-
 
NC_008527  LACR_1522  putative DNA-binding protein  55.75 
 
 
111 aa  124  5e-28  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  0.0239246  n/a   
 
 
-
 
NC_012793  GWCH70_1086  putative helix-turn-helix protein YlxM/p13 family protein  55.05 
 
 
110 aa  122  1e-27  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.000075195  n/a   
 
 
-
 
NC_013411  GYMC61_1977  putative DNA-binding protein  54.13 
 
 
110 aa  116  9.999999999999999e-26  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009674  Bcer98_2498  putative DNA-binding protein  52.29 
 
 
110 aa  110  5e-24  Bacillus cytotoxicus NVH 391-98  Bacteria  hitchhiker  0.00012288  n/a   
 
 
-
 
NC_011773  BCAH820_3860  putative DNA-binding protein  51.38 
 
 
110 aa  109  1.0000000000000001e-23  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  6.54783e-61 
 
 
-
 
NC_011658  BCAH187_A3894  putative DNA-binding protein  51.38 
 
 
110 aa  109  1.0000000000000001e-23  Bacillus cereus AH187  Bacteria  unclonable  0.000000001182  n/a   
 
 
-
 
NC_011725  BCB4264_A3945  putative DNA-binding protein  51.38 
 
 
110 aa  109  1.0000000000000001e-23  Bacillus cereus B4264  Bacteria  hitchhiker  0.000161258  n/a   
 
 
-
 
NC_011772  BCG9842_B1298  putative DNA-binding protein  51.38 
 
 
110 aa  109  1.0000000000000001e-23  Bacillus cereus G9842  Bacteria  hitchhiker  0.00000324783  hitchhiker  8.48184e-23 
 
 
-
 
NC_007530  GBAA_3984  putative DNA-binding protein  51.38 
 
 
110 aa  109  1.0000000000000001e-23  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.0000000102788  n/a   
 
 
-
 
NC_006274  BCZK3605  putative DNA-binding protein  51.38 
 
 
110 aa  109  1.0000000000000001e-23  Bacillus cereus E33L  Bacteria  hitchhiker  0.0000000000422052  n/a   
 
 
-
 
NC_005957  BT9727_3587  putative DNA-binding protein  51.38 
 
 
110 aa  109  1.0000000000000001e-23  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.0000000673817  n/a   
 
 
-
 
NC_005945  BAS3697  putative DNA-binding protein  51.38 
 
 
110 aa  109  1.0000000000000001e-23  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.0000000000192847  n/a   
 
 
-
 
NC_003909  BCE_3888  putative DNA-binding protein  51.38 
 
 
110 aa  109  1.0000000000000001e-23  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.00280663  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3669  putative DNA-binding protein  51.38 
 
 
110 aa  108  2.0000000000000002e-23  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.000000687625  n/a   
 
 
-
 
NC_009632  SaurJH1_1320  putative DNA-binding protein  54.08 
 
 
110 aa  100  9e-21  Staphylococcus aureus subsp. aureus JH1  Bacteria  hitchhiker  0.00000787485  n/a   
 
 
-
 
NC_009487  SaurJH9_1295  putative DNA-binding protein  54.08 
 
 
110 aa  100  9e-21  Staphylococcus aureus subsp. aureus JH9  Bacteria  hitchhiker  0.00000113338  n/a   
 
 
-
 
NC_002976  SERP0802  putative DNA-binding protein  50 
 
 
110 aa  99.8  1e-20  Staphylococcus epidermidis RP62A  Bacteria  normal  0.186415  n/a   
 
 
-
 
NC_008530  LGAS_0784  hypothetical protein  64.79 
 
 
113 aa  93.6  8e-19  Lactobacillus gasseri ATCC 33323  Bacteria  hitchhiker  0.000115289  hitchhiker  3.01315e-25 
 
 
-
 
NC_008531  LEUM_1562  hypothetical protein  49.48 
 
 
114 aa  85.5  2e-16  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_07280  putative helix-turn-helix protein YlxM/p13 family protein  38.39 
 
 
138 aa  80.5  0.000000000000006  Halothermothrix orenii H 168  Bacteria  hitchhiker  4.44175e-17  n/a   
 
 
-
 
NC_009253  Dred_2057  putative DNA-binding protein  52.86 
 
 
117 aa  80.5  0.000000000000007  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.000575566  n/a   
 
 
-
 
NC_013216  Dtox_1195  putative DNA-binding protein  55.41 
 
 
121 aa  79.7  0.00000000000001  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.00566112  normal  0.0879522 
 
 
-
 
NC_013205  Aaci_1350  putative helix-turn-helix protein YlxM/p13 family protein  55.38 
 
 
138 aa  79  0.00000000000002  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  hitchhiker  0.000485447  n/a   
 
 
-
 
NC_008346  Swol_1499  hypothetical protein  54.05 
 
 
114 aa  78.6  0.00000000000003  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.0744431  n/a   
 
 
-
 
NC_010718  Nther_1367  putative helix-turn-helix protein YlxM/p13 family protein  38.53 
 
 
115 aa  77.8  0.00000000000005  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  decreased coverage  0.0000000000121359  normal  0.130704 
 
 
-
 
NC_007644  Moth_0965  putative helix-turn-helix protein, YlxM/p13-like  44.9 
 
 
122 aa  75.5  0.0000000000002  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.00000337599  normal 
 
 
-
 
NC_009012  Cthe_0771  putative helix-turn-helix protein, YlxM/p13-like protein  44.94 
 
 
117 aa  75.5  0.0000000000002  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.00000112996  n/a   
 
 
-
 
NC_010424  Daud_0654  putative DNA-binding protein  59.38 
 
 
122 aa  74.7  0.0000000000004  Candidatus Desulforudis audaxviator MP104C  Bacteria  hitchhiker  0.00000927978  n/a   
 
 
-
 
NC_010320  Teth514_1714  putative DNA-binding protein  46.34 
 
 
117 aa  73.6  0.0000000000009  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.0000280165  n/a   
 
 
-
 
NC_013517  Sterm_1861  putative helix-turn-helix protein YlxM/p13 family protein  56.25 
 
 
109 aa  72.4  0.000000000002  Sebaldella termitidis ATCC 33386  Bacteria  unclonable  0.0000000000519848  n/a   
 
 
-
 
NC_007633  MCAP_0480  putative DNA-binding protein  48.57 
 
 
113 aa  70.9  0.000000000006  Mycoplasma capricolum subsp. capricolum ATCC 27343  Bacteria  normal  0.0438504  n/a   
 
 
-
 
NC_011830  Dhaf_3762  putative helix-turn-helix protein YlxM/p13 family protein  43.33 
 
 
122 aa  69.3  0.00000000002  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.000000407263  n/a   
 
 
-
 
NC_011898  Ccel_0708  putative helix-turn-helix protein YlxM/p13 family protein  41.67 
 
 
118 aa  66.2  0.0000000001  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.0000000725888  n/a   
 
 
-
 
NC_008528  OEOE_0456  hypothetical protein  39.08 
 
 
104 aa  62.4  0.000000002  Oenococcus oeni PSU-1  Bacteria  decreased coverage  0.00302471  n/a   
 
 
-
 
NC_008262  CPR_1686  putative DNA-binding protein  44.16 
 
 
112 aa  61.6  0.000000003  Clostridium perfringens SM101  Bacteria  decreased coverage  0.000000027159  n/a   
 
 
-
 
NC_008261  CPF_1968  putative DNA-binding protein  44.16 
 
 
112 aa  61.2  0.000000004  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_013515  Smon_1451  putative helix-turn-helix protein YlxM/p13 family protein  49.3 
 
 
108 aa  60.8  0.000000006  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_012034  Athe_0966  putative helix-turn-helix protein YlxM/p13 family protein  29.91 
 
 
116 aa  60.8  0.000000006  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.000131133  n/a   
 
 
-
 
NC_010001  Cphy_2410  putative helix-turn-helix protein YlxM/p13 family protein  39.29 
 
 
126 aa  59.3  0.00000002  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.000000167585  n/a   
 
 
-
 
NC_013171  Apre_1305  putative helix-turn-helix protein YlxM/p13 family protein  44.29 
 
 
107 aa  59.3  0.00000002  Anaerococcus prevotii DSM 20548  Bacteria  unclonable  0.000000000161782  n/a   
 
 
-
 
NC_006055  Mfl238  putative DNA-binding protein  40.28 
 
 
108 aa  55.5  0.0000002  Mesoplasma florum L1  Bacteria  normal  n/a   
 
 
-
 
NC_011374  UUR10_0158  putative DNA-binding protein  38.16 
 
 
99 aa  49.7  0.00001  Ureaplasma urealyticum serovar 10 str. ATCC 33699  Bacteria  normal  0.123109  n/a   
 
 
-
 
NC_013522  Taci_1419  putative helix-turn-helix protein YlxM/p13 family protein  36.84 
 
 
116 aa  43.9  0.0008  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  unclonable  0.00000000082912  n/a   
 
 
-
 
NC_008146  Mmcs_4573  TetR family transcriptional regulator  34.15 
 
 
197 aa  42.7  0.002  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4661  TetR family transcriptional regulator  34.15 
 
 
197 aa  42.7  0.002  Mycobacterium sp. KMS  Bacteria  normal  0.227652  normal 
 
 
-
 
NC_009077  Mjls_4956  TetR family transcriptional regulator  34.15 
 
 
197 aa  41.6  0.003  Mycobacterium sp. JLS  Bacteria  normal  normal  0.0932682 
 
 
-
 
NC_013235  Namu_3655  Resolvase domain protein  34.55 
 
 
212 aa  40.4  0.008  Nakamurella multipartita DSM 44233  Bacteria  normal  0.0554731  normal  0.301287 
 
 
-
 
NC_013235  Namu_3572  Resolvase domain protein  34.55 
 
 
213 aa  40.4  0.008  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000252709  hitchhiker  0.00189094 
 
 
-
 
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