More than 300 homologs were found in PanDaTox collection
for query gene Lferr_0447 on replicon NC_011206
Organism: Acidithiobacillus ferrooxidans ATCC 53993



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011206  Lferr_0447  transcriptional regulator, Crp/Fnr family  100 
 
 
233 aa  478  1e-134  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  hitchhiker  0.000251756 
 
 
-
 
NC_011761  AFE_0270  transcriptional regulator, Crp/Fnr family  100 
 
 
233 aa  478  1e-134  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.479827  n/a   
 
 
-
 
NC_008789  Hhal_0917  CRP/FNR family transcriptional regulator  41.41 
 
 
254 aa  172  3.9999999999999995e-42  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_0631  cyclic nucleotide-binding protein  35.29 
 
 
235 aa  127  2.0000000000000002e-28  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal  0.0164371 
 
 
-
 
NC_010531  Pnec_1040  cyclic nucleotide-binding protein  30.22 
 
 
238 aa  122  3e-27  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.464794 
 
 
-
 
NC_007643  Rru_A1622  Crp/FNR family transcriptional regulator  31.43 
 
 
259 aa  118  9e-26  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.366469  n/a   
 
 
-
 
NC_009379  Pnuc_0796  cyclic nucleotide-binding protein  29.77 
 
 
238 aa  115  3.9999999999999997e-25  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_0422  transcriptional regulator, Crp/Fnr family  30.26 
 
 
246 aa  102  5e-21  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_1557  transcriptional regulator, Crp/Fnr family  30.22 
 
 
250 aa  101  8e-21  Methylobacterium chloromethanicum CM4  Bacteria  decreased coverage  0.00717235  normal 
 
 
-
 
NC_010172  Mext_1357  cyclic nucleotide-binding  29.78 
 
 
250 aa  100  1e-20  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.395788 
 
 
-
 
NC_004578  PSPTO_1666  transcriptional regulator, Crp/Fnr family  29.28 
 
 
250 aa  99  6e-20  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.0506299  n/a   
 
 
-
 
NC_013889  TK90_0787  transcriptional regulator, Crp/Fnr family  28.51 
 
 
243 aa  98.6  7e-20  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_3926  transcriptional regulator, Crp/Fnr family  29.68 
 
 
238 aa  98.6  7e-20  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5030  transcriptional regulator, Crp/Fnr family  29.68 
 
 
238 aa  98.6  7e-20  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_1951  fumarate/nitrate reduction transcriptional regulator  28.19 
 
 
250 aa  96.7  3e-19  Shewanella putrefaciens CN-32  Bacteria  normal  0.80493  n/a   
 
 
-
 
NC_009485  BBta_5746  Crp/FNR family transcriptional regulator  28.84 
 
 
237 aa  96.3  3e-19  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.765257  normal 
 
 
-
 
NC_009901  Spea_2222  fumarate/nitrate reduction transcriptional regulator  27.72 
 
 
250 aa  94.7  1e-18  Shewanella pealeana ATCC 700345  Bacteria  normal  0.0665535  n/a   
 
 
-
 
NC_009831  Ssed_2219  fumarate/nitrate reduction transcriptional regulator  29.61 
 
 
249 aa  94.4  1e-18  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_2233  CRP/FNR family transcriptional regulator  25.85 
 
 
253 aa  94.4  1e-18  Marinomonas sp. MWYL1  Bacteria  normal  0.0375344  normal  0.791743 
 
 
-
 
NC_008700  Sama_1799  fumarate/nitrate reduction transcriptional regulator  28.8 
 
 
250 aa  94.4  1e-18  Shewanella amazonensis SB2B  Bacteria  normal  0.417815  normal  0.180258 
 
 
-
 
NC_011365  Gdia_1984  transcriptional regulator, Crp/Fnr family  28.64 
 
 
250 aa  94  2e-18  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.312779  normal 
 
 
-
 
NC_010511  M446_6132  Crp/FNR family transcriptional regulator  28.51 
 
 
245 aa  94  2e-18  Methylobacterium sp. 4-46  Bacteria  normal  0.0884478  normal 
 
 
-
 
NC_009052  Sbal_2209  fumarate/nitrate reduction transcriptional regulator  27.84 
 
 
250 aa  94  2e-18  Shewanella baltica OS155  Bacteria  hitchhiker  0.00613295  n/a   
 
 
-
 
NC_009997  Sbal195_2212  fumarate/nitrate reduction transcriptional regulator  27.84 
 
 
250 aa  94  2e-18  Shewanella baltica OS195  Bacteria  hitchhiker  0.00299596  normal  0.266977 
 
 
-
 
NC_008577  Shewana3_2115  fumarate/nitrate reduction transcriptional regulator  27.32 
 
 
250 aa  94  2e-18  Shewanella sp. ANA-3  Bacteria  normal  0.508722  normal  0.0650668 
 
 
-
 
NC_008345  Sfri_2018  fumarate/nitrate reduction transcriptional regulator  27.31 
 
 
252 aa  93.6  2e-18  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.831368  n/a   
 
 
-
 
NC_009092  Shew_1993  fumarate/nitrate reduction transcriptional regulator  27.63 
 
 
249 aa  94.4  2e-18  Shewanella loihica PV-4  Bacteria  normal  0.238952  normal 
 
 
-
 
NC_011663  Sbal223_2222  fumarate/nitrate reduction transcriptional regulator  27.84 
 
 
250 aa  94  2e-18  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000942023  normal  0.178468 
 
 
-
 
NC_009035  Sbal_4495  fumarate/nitrate reduction transcriptional regulator  27.84 
 
 
250 aa  94  2e-18  Shewanella baltica OS155  Bacteria  n/a    n/a   
 
 
-
 
NC_009665  Shew185_2162  fumarate/nitrate reduction transcriptional regulator  27.84 
 
 
250 aa  94  2e-18  Shewanella baltica OS185  Bacteria  normal  0.914647  n/a   
 
 
-
 
NC_008321  Shewmr4_2014  fumarate/nitrate reduction transcriptional regulator  27.32 
 
 
250 aa  94  2e-18  Shewanella sp. MR-4  Bacteria  normal  decreased coverage  0.00000000422436 
 
 
-
 
NC_008322  Shewmr7_1961  fumarate/nitrate reduction transcriptional regulator  27.32 
 
 
250 aa  94.4  2e-18  Shewanella sp. MR-7  Bacteria  normal  hitchhiker  0.00754009 
 
 
-
 
NC_002977  MCA2120  Crp/FNR family transcriptional regulator  30.7 
 
 
245 aa  93.2  3e-18  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_1302  transcriptional regulator, Crp/Fnr family  28.84 
 
 
254 aa  92.4  6e-18  Methylobacterium populi BJ001  Bacteria  normal  0.0109091  normal 
 
 
-
 
NC_004347  SO_2356  fumarate/nitrate reduction transcriptional regulator  28.87 
 
 
254 aa  91.7  9e-18  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007912  Sde_1464  transcriptional activator Anr  26.29 
 
 
244 aa  91.7  9e-18  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_2417  fumarate/nitrate reduction transcriptional regulator  28.49 
 
 
249 aa  91.3  1e-17  Shewanella woodyi ATCC 51908  Bacteria  normal  0.0646393  decreased coverage  0.000000159166 
 
 
-
 
NC_007952  Bxe_B0606  Crp/FNR family transcriptional regulator  31.53 
 
 
267 aa  91.3  1e-17  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.149995 
 
 
-
 
NC_007643  Rru_A3322  Crp/FNR family transcriptional regulator  27.03 
 
 
262 aa  90.5  2e-17  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.0702622  n/a   
 
 
-
 
NC_007954  Sden_1843  fumarate/nitrate reduction transcriptional regulator  26.36 
 
 
250 aa  90.1  2e-17  Shewanella denitrificans OS217  Bacteria  normal  0.0177159  n/a   
 
 
-
 
NC_009783  VIBHAR_02295  fumarate/nitrate reduction transcriptional regulator  28.8 
 
 
248 aa  90.1  3e-17  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008528  OEOE_0355  Crp-like transcriptional regulator  27.73 
 
 
221 aa  89.7  3e-17  Oenococcus oeni PSU-1  Bacteria  normal  0.128458  n/a   
 
 
-
 
NC_009484  Acry_1631  CRP/FNR family transcriptional regulator  29.78 
 
 
310 aa  89.4  4e-17  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003475  fumarate and nitrate reduction regulatory protein  28.8 
 
 
248 aa  89.4  4e-17  Vibrio sp. Ex25  Bacteria  normal  0.292896  n/a   
 
 
-
 
NC_009457  VC0395_A1045  fumarate/nitrate reduction transcriptional regulator  28.9 
 
 
250 aa  89.4  4e-17  Vibrio cholerae O395  Bacteria  normal  0.18077  n/a   
 
 
-
 
NC_011071  Smal_1752  transcriptional regulator, Crp/Fnr family  30.32 
 
 
250 aa  89  5e-17  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.103124 
 
 
-
 
NC_007347  Reut_A1147  cyclic nucleotide-binding: regulatory protein, Crp  26.17 
 
 
261 aa  89  6e-17  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007347  Reut_A1217  cyclic nucleotide-binding: regulatory protein, Crp  26.17 
 
 
261 aa  89  6e-17  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_2634  CRP/FNR family transcriptional regulator  28.78 
 
 
249 aa  88.6  7e-17  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_1853  fumarate/nitrate reduction transcriptional regulator  27.6 
 
 
250 aa  88.2  9e-17  Enterobacter sp. 638  Bacteria  normal  normal  0.755428 
 
 
-
 
NC_007947  Mfla_1734  Crp/FNR family transcriptional regulator  27.93 
 
 
241 aa  88.2  9e-17  Methylobacillus flagellatus KT  Bacteria  normal  0.79675  hitchhiker  0.000773544 
 
 
-
 
NC_010676  Bphyt_6315  transcriptional regulator, Crp/Fnr family  27.03 
 
 
403 aa  87.8  1e-16  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C1845  fumarate/nitrate reduction transcriptional regulator  27.66 
 
 
250 aa  87.8  1e-16  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.918423  normal 
 
 
-
 
NC_011080  SNSL254_A1783  fumarate/nitrate reduction transcriptional regulator  27.66 
 
 
250 aa  87.8  1e-16  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.251439 
 
 
-
 
NC_011149  SeAg_B1491  fumarate/nitrate reduction transcriptional regulator  27.66 
 
 
250 aa  87.8  1e-16  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0202312  n/a   
 
 
-
 
NC_011205  SeD_A1673  fumarate/nitrate reduction transcriptional regulator  27.66 
 
 
250 aa  87.8  1e-16  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.349784  normal  0.0983377 
 
 
-
 
NC_008496  LEUM_A06  Crp-like transcriptional regulator  24.78 
 
 
230 aa  87.8  1e-16  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_1981  fumarate/nitrate reduction transcriptional regulator  27.66 
 
 
250 aa  88.2  1e-16  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.320226 
 
 
-
 
NC_010465  YPK_1944  fumarate/nitrate reduction transcriptional regulator  27.66 
 
 
250 aa  87.8  1e-16  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.755264  n/a   
 
 
-
 
NC_009832  Spro_2582  fumarate/nitrate reduction transcriptional regulator  27.32 
 
 
254 aa  88.2  1e-16  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_009079  BMA10247_A0190  Crp/FNR family transcriptional regulator  28.18 
 
 
242 aa  87.8  1e-16  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_1833  fumarate/nitrate reduction transcriptional regulator  27.66 
 
 
250 aa  87.8  1e-16  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1334  Crp/FNR family transcriptional regulator  28.18 
 
 
242 aa  87.8  1e-16  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A1785  fumarate/nitrate reduction transcriptional regulator  27.66 
 
 
250 aa  87.8  1e-16  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.377507  normal  0.141635 
 
 
-
 
CP001637  EcDH1_2311  transcriptional regulator, Crp/Fnr family  27.66 
 
 
250 aa  87.4  2e-16  Escherichia coli DH1  Bacteria  normal  0.144598  n/a   
 
 
-
 
NC_010498  EcSMS35_1788  fumarate/nitrate reduction transcriptional regulator  27.66 
 
 
250 aa  87.4  2e-16  Escherichia coli SMS-3-5  Bacteria  normal  0.765276  normal 
 
 
-
 
NC_006349  BMAA0164  Crp/FNR family transcriptional regulator  28.18 
 
 
260 aa  87.4  2e-16  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2604  Crp/Fnr family transcriptional regulator  28.18 
 
 
260 aa  87.4  2e-16  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1016  Crp/FNR family transcriptional regulator  28.18 
 
 
260 aa  87.4  2e-16  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_1811  Crp/FNR family transcriptional regulator  27.66 
 
 
244 aa  87  2e-16  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E1575  fumarate/nitrate reduction transcriptional regulator  27.66 
 
 
250 aa  87.4  2e-16  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_010531  Pnec_1356  transcriptional regulator, Crp/Fnr family  25.11 
 
 
256 aa  87.4  2e-16  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  normal  0.0588975 
 
 
-
 
NC_010159  YpAngola_A2293  fumarate/nitrate reduction transcriptional regulator  27.66 
 
 
250 aa  87.4  2e-16  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_1546  fumarate/nitrate reduction transcriptional regulator  27.66 
 
 
250 aa  87.4  2e-16  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009379  Pnuc_0460  CRP/FNR family transcriptional regulator  24.56 
 
 
256 aa  87.4  2e-16  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_0870  transcriptional regulator FixK  28.82 
 
 
227 aa  87  2e-16  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A1450  fumarate/nitrate reduction transcriptional regulator  27.66 
 
 
250 aa  87.4  2e-16  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_007973  Rmet_2037  Crp/FNR family transcriptional regulator  25 
 
 
232 aa  87.4  2e-16  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.441781 
 
 
-
 
NC_010468  EcolC_2291  fumarate/nitrate reduction transcriptional regulator  27.66 
 
 
250 aa  87.4  2e-16  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_011898  Ccel_1678  transcriptional regulator, Crp/Fnr family  24.38 
 
 
234 aa  87  2e-16  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I1571  fumarate/nitrate reduction transcriptional regulator  28.26 
 
 
250 aa  87  2e-16  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.75505  n/a   
 
 
-
 
NC_009075  BURPS668_A2747  Crp/Fnr family transcriptional regulator  28.18 
 
 
260 aa  87.4  2e-16  Burkholderia pseudomallei 668  Bacteria  normal  0.225266  n/a   
 
 
-
 
NC_012912  Dd1591_2081  fumarate/nitrate reduction transcriptional regulator  27.14 
 
 
250 aa  87  2e-16  Dickeya zeae Ech1591  Bacteria  normal  0.0488524  n/a   
 
 
-
 
NC_007650  BTH_II0460  Crp/FNR family transcriptional regulator  27.73 
 
 
260 aa  86.7  3e-16  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_5811  Crp/FNR family transcriptional regulator  27.68 
 
 
266 aa  86.3  3e-16  Burkholderia phymatum STM815  Bacteria  normal  normal  0.118405 
 
 
-
 
NC_008262  CPR_0754  Crp/FNR family transcriptional regulator  25.75 
 
 
236 aa  86.7  3e-16  Clostridium perfringens SM101  Bacteria  decreased coverage  0.0000212493  n/a   
 
 
-
 
NC_004310  BR0654  Crp/FNR family transcriptional regulator  25.99 
 
 
248 aa  85.9  4e-16  Brucella suis 1330  Bacteria  normal  0.48838  n/a   
 
 
-
 
NC_009505  BOV_0647  nitrogen fixation regulation protein fixk  25.99 
 
 
251 aa  86.3  4e-16  Brucella ovis ATCC 25840  Bacteria  normal  0.774151  n/a   
 
 
-
 
NC_011138  MADE_02063  transcriptional regulator of aerobic, anaerobic respiration, osmotic balance (CAMP-binding family) protein  25.95 
 
 
222 aa  86.3  4e-16  Alteromonas macleodii 'Deep ecotype'  Bacteria  hitchhiker  0.00714534  n/a   
 
 
-
 
NC_010623  Bphy_4433  Crp/FNR family transcriptional regulator  28.72 
 
 
224 aa  85.9  5e-16  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007614  Nmul_A1773  Crp/FNR family transcriptional regulator  25.95 
 
 
263 aa  85.5  7e-16  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_1138  Crp/FNR family transcriptional regulator  26.82 
 
 
260 aa  85.1  8e-16  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_19910  Fnr-like negative transcriptional regulator of CydAB  25.22 
 
 
244 aa  85.1  8e-16  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1377  Crp/FNR family transcriptional regulator  28.38 
 
 
239 aa  85.1  8e-16  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4713  transcriptional regulator, Crp/Fnr family  28.38 
 
 
239 aa  85.1  9e-16  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.557049  n/a   
 
 
-
 
NC_012880  Dd703_1864  fumarate/nitrate reduction transcriptional regulator  27.14 
 
 
250 aa  85.1  9e-16  Dickeya dadantii Ech703  Bacteria  normal  0.856056  n/a   
 
 
-
 
NC_009656  PSPA7_3788  transcriptional regulator Anr  27.13 
 
 
244 aa  84.7  0.000000000000001  Pseudomonas aeruginosa PA7  Bacteria  normal  0.620164  n/a   
 
 
-
 
NC_012917  PC1_2105  fumarate/nitrate reduction transcriptional regulator  27.84 
 
 
248 aa  84.7  0.000000000000001  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0944449  n/a   
 
 
-
 
NC_008463  PA14_44490  transcriptional regulator Anr  27.13 
 
 
244 aa  84.7  0.000000000000001  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.793348 
 
 
-
 
NC_008261  CPF_0778  Crp/FNR family transcriptional regulator  25.75 
 
 
236 aa  84.3  0.000000000000001  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000312841  n/a   
 
 
-
 
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