More than 300 homologs were found in PanDaTox collection
for query gene Lcho_3180 on replicon NC_010524
Organism: Leptothrix cholodnii SP-6



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010524  Lcho_3180  methyl-accepting chemotaxis sensory transducer  100 
 
 
522 aa  1021    Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000915947 
 
 
-
 
NC_012791  Vapar_4189  methyl-accepting chemotaxis sensory transducer  47.71 
 
 
559 aa  413  1e-114  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2225  methyl-accepting chemotaxis sensory transducer  45.35 
 
 
583 aa  412  1e-114  Rhodoferax ferrireducens T118  Bacteria  normal  0.220406  n/a   
 
 
-
 
NC_007404  Tbd_1620  methyl-accepting chemotaxis sensory transducer  49.12 
 
 
559 aa  405  1e-111  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.439493  normal  0.532508 
 
 
-
 
NC_007947  Mfla_2154  methyl-accepting chemotaxis sensory transducer  46.63 
 
 
569 aa  404  1e-111  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007974  Rmet_5612  methyl-accepting chemotaxis protein II  45.24 
 
 
513 aa  392  1e-108  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A1697  methyl-accepting chemotaxis protein  46.17 
 
 
541 aa  385  1e-105  Methylibium petroleiphilum PM1  Bacteria  normal  0.796497  normal  0.294844 
 
 
-
 
NC_007908  Rfer_1480  methyl-accepting chemotaxis sensory transducer  45.68 
 
 
537 aa  383  1e-105  Rhodoferax ferrireducens T118  Bacteria  normal  0.201713  n/a   
 
 
-
 
NC_010625  Bphy_6805  methyl-accepting chemotaxis sensory transducer  43.43 
 
 
499 aa  373  1e-102  Burkholderia phymatum STM815  Bacteria  normal  0.923818  normal 
 
 
-
 
NC_008782  Ajs_0160  methyl-accepting chemotaxis sensory transducer  45.83 
 
 
579 aa  369  1e-101  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_0178  methyl-accepting chemotaxis sensory transducer  46.02 
 
 
581 aa  371  1e-101  Acidovorax ebreus TPSY  Bacteria  normal  0.62004  n/a   
 
 
-
 
NC_007348  Reut_B3731  methyl-accepting chemotaxis sensory transducer  44.85 
 
 
513 aa  369  1e-101  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_0925  methyl-accepting chemotaxis sensory transducer  42.77 
 
 
552 aa  369  1e-101  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_0364  methyl-accepting chemotaxis sensory transducer  43.27 
 
 
580 aa  363  5.0000000000000005e-99  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_6319  methyl-accepting chemotaxis sensory transducer  42.39 
 
 
549 aa  362  6e-99  Burkholderia phymatum STM815  Bacteria  normal  0.249944  normal 
 
 
-
 
NC_010002  Daci_3834  methyl-accepting chemotaxis sensory transducer  44.47 
 
 
595 aa  362  9e-99  Delftia acidovorans SPH-1  Bacteria  normal  0.10184  normal  0.0113192 
 
 
-
 
NC_008752  Aave_1405  methyl-accepting chemotaxis sensory transducer  44.81 
 
 
548 aa  362  9e-99  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_0354  methyl-accepting chemotaxis sensory transducer  43.24 
 
 
578 aa  360  3e-98  Acidovorax ebreus TPSY  Bacteria  normal  0.496762  n/a   
 
 
-
 
NC_008825  Mpe_A0750  methyl-accepting chemotaxis sensory transducer  43.97 
 
 
592 aa  358  9e-98  Methylibium petroleiphilum PM1  Bacteria  normal  0.318431  normal  0.0335504 
 
 
-
 
NC_007404  Tbd_0660  chemotaxis sensory transducer  45.37 
 
 
586 aa  355  1e-96  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.756829  normal 
 
 
-
 
NC_007974  Rmet_5306  methyl-accepting chemotaxis sensory transducer  42.47 
 
 
565 aa  354  2e-96  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.00488588  normal  0.0415564 
 
 
-
 
NC_008752  Aave_1343  methyl-accepting chemotaxis sensory transducer  45.45 
 
 
620 aa  352  1e-95  Acidovorax citrulli AAC00-1  Bacteria  normal  0.244601  normal  0.213177 
 
 
-
 
NC_007908  Rfer_0990  methyl-accepting chemotaxis sensory transducer  42.69 
 
 
542 aa  349  6e-95  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2663  methyl-accepting chemotaxis sensory transducer  42.97 
 
 
520 aa  349  8e-95  Methylibium petroleiphilum PM1  Bacteria  normal  0.0198398  normal 
 
 
-
 
NC_007404  Tbd_1622  methyl-accepting chemotaxis sensory transducer  59.08 
 
 
572 aa  347  2e-94  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.415216  normal 
 
 
-
 
NC_012791  Vapar_4186  methyl-accepting chemotaxis sensory transducer  44.55 
 
 
577 aa  348  2e-94  Variovorax paradoxus S110  Bacteria  normal  0.494266  n/a   
 
 
-
 
NC_013421  Pecwa_4355  methyl-accepting chemotaxis sensory transducer  43.22 
 
 
540 aa  346  5e-94  Pectobacterium wasabiae WPP163  Bacteria  normal  0.31766  n/a   
 
 
-
 
NC_012917  PC1_1417  methyl-accepting chemotaxis sensory transducer  42.28 
 
 
554 aa  346  5e-94  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.37293  n/a   
 
 
-
 
NC_012917  PC1_2526  methyl-accepting chemotaxis sensory transducer  41.71 
 
 
554 aa  346  6e-94  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4183  methyl-accepting chemotaxis sensory transducer  46.12 
 
 
516 aa  345  1e-93  Variovorax paradoxus S110  Bacteria  normal  0.278563  n/a   
 
 
-
 
NC_013421  Pecwa_1820  methyl-accepting chemotaxis sensory transducer  41.89 
 
 
553 aa  345  1e-93  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_003296  RS04782  methyl-accepting chemotaxis transducer transmembrane protein  41.43 
 
 
543 aa  344  2e-93  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_4071  methyl-accepting chemotaxis sensory transducer  41.83 
 
 
553 aa  344  2e-93  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_2507  methyl-accepting chemotaxis sensory transducer  41.9 
 
 
589 aa  343  5.999999999999999e-93  Rhodoferax ferrireducens T118  Bacteria  normal  0.197123  n/a   
 
 
-
 
NC_008752  Aave_1956  methyl-accepting chemotaxis sensory transducer  45.09 
 
 
598 aa  342  9e-93  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0136938 
 
 
-
 
NC_013421  Pecwa_2831  methyl-accepting chemotaxis sensory transducer  41.65 
 
 
554 aa  341  1e-92  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_4354  methyl-accepting chemotaxis sensory transducer  41.55 
 
 
555 aa  341  2e-92  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_3266  methyl-accepting chemotaxis sensory transducer  49.52 
 
 
650 aa  341  2e-92  Delftia acidovorans SPH-1  Bacteria  normal  0.50478  hitchhiker  0.0000385615 
 
 
-
 
NC_011992  Dtpsy_0931  methyl-accepting chemotaxis sensory transducer  42.42 
 
 
591 aa  341  2e-92  Acidovorax ebreus TPSY  Bacteria  normal  0.269909  n/a   
 
 
-
 
NC_008782  Ajs_1017  methyl-accepting chemotaxis sensory transducer  42.23 
 
 
591 aa  341  2e-92  Acidovorax sp. JS42  Bacteria  normal  0.696887  normal 
 
 
-
 
NC_012917  PC1_4072  methyl-accepting chemotaxis sensory transducer  41.92 
 
 
540 aa  340  2.9999999999999998e-92  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_3772  methyl-accepting chemotaxis sensory transducer  47.68 
 
 
586 aa  340  5e-92  Acidovorax sp. JS42  Bacteria  normal  0.167359  normal 
 
 
-
 
NC_011992  Dtpsy_1752  methyl-accepting chemotaxis sensory transducer  42.2 
 
 
523 aa  339  5.9999999999999996e-92  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2474  methyl-accepting chemotaxis sensory transducer  41.54 
 
 
552 aa  339  7e-92  Dickeya dadantii Ech703  Bacteria  normal  0.356267  n/a   
 
 
-
 
NC_007908  Rfer_3610  methyl-accepting chemotaxis sensory transducer  41.81 
 
 
511 aa  339  7e-92  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_0407  methyl-accepting chemotaxis sensory transducer  43.99 
 
 
525 aa  338  9.999999999999999e-92  Acidovorax citrulli AAC00-1  Bacteria  normal  0.770374  normal 
 
 
-
 
NC_010524  Lcho_3485  methyl-accepting chemotaxis sensory transducer  43.02 
 
 
573 aa  338  1.9999999999999998e-91  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000328178 
 
 
-
 
NC_012880  Dd703_1569  methyl-accepting chemotaxis sensory transducer  41.62 
 
 
554 aa  335  1e-90  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_0727  methyl-accepting chemotaxis sensory transducer  41.14 
 
 
559 aa  335  1e-90  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_2167  methyl-accepting chemotaxis sensory transducer  57.49 
 
 
585 aa  335  1e-90  Geobacter uraniireducens Rf4  Bacteria  normal  0.38945  n/a   
 
 
-
 
NC_010552  BamMC406_4332  methyl-accepting chemotaxis sensory transducer  42.08 
 
 
545 aa  334  2e-90  Burkholderia ambifaria MC40-6  Bacteria  normal  0.167851  normal 
 
 
-
 
NC_007511  Bcep18194_B1523  methyl-accepting chemotaxis sensory transducer  41.88 
 
 
539 aa  333  5e-90  Burkholderia sp. 383  Bacteria  normal  normal  0.377846 
 
 
-
 
NC_008752  Aave_0227  methyl-accepting chemotaxis sensory transducer  46.21 
 
 
592 aa  333  7.000000000000001e-90  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_010682  Rpic_2095  methyl-accepting chemotaxis sensory transducer  41.86 
 
 
520 aa  332  8e-90  Ralstonia pickettii 12J  Bacteria  normal  0.649492  normal  0.265934 
 
 
-
 
NC_012912  Dd1591_0695  methyl-accepting chemotaxis sensory transducer  40.87 
 
 
561 aa  332  9e-90  Dickeya zeae Ech1591  Bacteria  normal  0.305861  n/a   
 
 
-
 
NC_012917  PC1_0111  methyl-accepting chemotaxis sensory transducer  40.65 
 
 
556 aa  332  1e-89  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_4184  methyl-accepting chemotaxis sensory transducer  49.75 
 
 
493 aa  331  2e-89  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_3926  methyl-accepting chemotaxis sensory transducer  43.05 
 
 
539 aa  331  2e-89  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.279293  n/a   
 
 
-
 
NC_008543  Bcen2424_4440  methyl-accepting chemotaxis sensory transducer  43.05 
 
 
539 aa  331  2e-89  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_4446  methyl-accepting chemotaxis sensory transducer  44.05 
 
 
605 aa  331  2e-89  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0260008  normal  0.622584 
 
 
-
 
NC_010002  Daci_4297  methyl-accepting chemotaxis sensory transducer  58.5 
 
 
471 aa  330  4e-89  Delftia acidovorans SPH-1  Bacteria  decreased coverage  0.00689697  normal 
 
 
-
 
NC_012917  PC1_3464  methyl-accepting chemotaxis sensory transducer  40.42 
 
 
551 aa  329  7e-89  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_6699  methyl-accepting chemotaxis sensory transducer  44.55 
 
 
575 aa  329  7e-89  Burkholderia phymatum STM815  Bacteria  normal  0.198234  normal 
 
 
-
 
NC_008782  Ajs_1951  methyl-accepting chemotaxis sensory transducer  43.39 
 
 
508 aa  329  8e-89  Acidovorax sp. JS42  Bacteria  normal  normal  0.747742 
 
 
-
 
NC_010515  Bcenmc03_5865  methyl-accepting chemotaxis sensory transducer  42.86 
 
 
539 aa  329  8e-89  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.439663  normal 
 
 
-
 
NC_012856  Rpic12D_1771  methyl-accepting chemotaxis sensory transducer  41.67 
 
 
520 aa  328  2.0000000000000001e-88  Ralstonia pickettii 12D  Bacteria  normal  normal  0.841752 
 
 
-
 
NC_010676  Bphyt_6336  methyl-accepting chemotaxis sensory transducer  42.06 
 
 
581 aa  327  3e-88  Burkholderia phytofirmans PsJN  Bacteria  normal  0.794546  normal 
 
 
-
 
NC_012912  Dd1591_1602  methyl-accepting chemotaxis sensory transducer  39.92 
 
 
554 aa  327  4.0000000000000003e-88  Dickeya zeae Ech1591  Bacteria  normal  0.33331  n/a   
 
 
-
 
NC_008752  Aave_4495  methyl-accepting chemotaxis sensory transducer  43.64 
 
 
605 aa  327  4.0000000000000003e-88  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0928828 
 
 
-
 
NC_012880  Dd703_3862  methyl-accepting chemotaxis sensory transducer  38.84 
 
 
555 aa  325  1e-87  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1078  methyl-accepting chemotaxis sensory transducer  56.63 
 
 
587 aa  325  1e-87  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00101669 
 
 
-
 
NC_010681  Bphyt_0409  methyl-accepting chemotaxis sensory transducer  40.61 
 
 
585 aa  325  1e-87  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_0428  methyl-accepting chemotaxis sensory transducer  42.19 
 
 
597 aa  325  1e-87  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_008825  Mpe_A0586  methyl-accepting chemotaxis sensory transducer  41.68 
 
 
584 aa  324  2e-87  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_0105  methyl-accepting chemotaxis sensory transducer  41.09 
 
 
556 aa  325  2e-87  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0104  methyl-accepting chemotaxis sensory transducer  41.46 
 
 
548 aa  325  2e-87  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012857  Rpic12D_4162  methyl-accepting chemotaxis sensory transducer  60 
 
 
615 aa  323  4e-87  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_1600  methyl-accepting chemotaxis sensory transducer  45.21 
 
 
535 aa  323  4e-87  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4050  methyl-accepting chemotaxis sensory transducer  60 
 
 
615 aa  323  4e-87  Ralstonia pickettii 12J  Bacteria  normal  0.996584  normal 
 
 
-
 
NC_007348  Reut_B5868  methyl-accepting chemotaxis sensory transducer  42.94 
 
 
541 aa  321  1.9999999999999998e-86  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_5852  methyl-accepting chemotaxis sensory transducer  40.07 
 
 
618 aa  321  1.9999999999999998e-86  Delftia acidovorans SPH-1  Bacteria  normal  0.217953  normal 
 
 
-
 
NC_012918  GM21_3217  methyl-accepting chemotaxis sensory transducer with Cache sensor  56.1 
 
 
584 aa  320  3e-86  Geobacter sp. M21  Bacteria  n/a    normal  0.480757 
 
 
-
 
NC_011992  Dtpsy_3407  methyl-accepting chemotaxis sensory transducer  56.21 
 
 
653 aa  320  3.9999999999999996e-86  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_4062  methyl-accepting chemotaxis sensory transducer  56.21 
 
 
653 aa  320  5e-86  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3609  methyl-accepting chemotaxis sensory transducer  53.35 
 
 
596 aa  320  5e-86  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0110  methyl-accepting chemotaxis sensory transducer  41.51 
 
 
548 aa  320  5e-86  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.975087  n/a   
 
 
-
 
NC_011146  Gbem_1044  methyl-accepting chemotaxis sensory transducer  56.1 
 
 
584 aa  319  9e-86  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A2764  methyl-accepting chemotaxis protein  42.13 
 
 
562 aa  318  1e-85  Burkholderia pseudomallei 668  Bacteria  normal  0.627836  n/a   
 
 
-
 
NC_008752  Aave_0104  methyl-accepting chemotaxis sensory transducer  43.06 
 
 
622 aa  318  1e-85  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_006349  BMAA0152  methyl-accepting chemotaxis protein  41.94 
 
 
565 aa  318  2e-85  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0176  methyl-accepting chemotaxis protein  41.94 
 
 
565 aa  318  2e-85  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008784  BMASAVP1_1321  methyl-accepting chemotaxis protein  41.94 
 
 
565 aa  318  2e-85  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2620  methyl-accepting chemotaxis protein  41.94 
 
 
562 aa  318  2e-85  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_2284  methyl-accepting chemotaxis sensory transducer  41.78 
 
 
547 aa  318  2e-85  Acidovorax citrulli AAC00-1  Bacteria  normal  0.206976  hitchhiker  0.0000952985 
 
 
-
 
NC_007348  Reut_B4001  histidine kinase, HAMP region: chemotaxis sensory transducer  52.38 
 
 
585 aa  317  3e-85  Ralstonia eutropha JMP134  Bacteria  normal  0.0946714  n/a   
 
 
-
 
NC_007435  BURPS1710b_A1029  methyl-accepting chemotaxis protein  41.94 
 
 
562 aa  317  4e-85  Burkholderia pseudomallei 1710b  Bacteria  normal  0.815966  n/a   
 
 
-
 
NC_007908  Rfer_3137  methyl-accepting chemotaxis sensory transducer  39.96 
 
 
532 aa  317  4e-85  Rhodoferax ferrireducens T118  Bacteria  normal  0.310324  n/a   
 
 
-
 
NC_013421  Pecwa_3618  methyl-accepting chemotaxis sensory transducer  40.08 
 
 
551 aa  317  4e-85  Pectobacterium wasabiae WPP163  Bacteria  normal  0.453306  n/a   
 
 
-
 
NC_012917  PC1_0112  methyl-accepting chemotaxis sensory transducer  40.45 
 
 
556 aa  316  5e-85  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_3087  methyl-accepting chemotaxis sensory transducer  50.84 
 
 
527 aa  316  8e-85  Acidovorax sp. JS42  Bacteria  normal  normal  0.823637 
 
 
-
 
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