20 homologs were found in PanDaTox collection
for query gene Lcho_2265 on replicon NC_010524
Organism: Leptothrix cholodnii SP-6



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010524  Lcho_2265  hypothetical protein  100 
 
 
147 aa  293  7e-79  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_008752  Aave_2905  XRE family transcriptional regulator  51.72 
 
 
134 aa  75.1  0.0000000000003  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0131008  normal  0.248064 
 
 
-
 
NC_010086  Bmul_4866  XRE family transcriptional regulator  33.1 
 
 
179 aa  64.7  0.0000000004  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.894538  normal  0.194277 
 
 
-
 
NC_013422  Hneap_1627  transcriptional regulator, XRE family  36 
 
 
135 aa  56.2  0.0000001  Halothiobacillus neapolitanus c2  Bacteria  hitchhiker  0.00124147  n/a   
 
 
-
 
NC_010465  YPK_2310  XRE family transcriptional regulator  32.8 
 
 
130 aa  53.5  0.0000009  Yersinia pseudotuberculosis YPIII  Bacteria  hitchhiker  0.0000103087  n/a   
 
 
-
 
NC_003295  RSc1907  putative DNA-binding repressor transcription regulator protein  31.78 
 
 
173 aa  51.6  0.000003  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0629084  normal 
 
 
-
 
NC_008061  Bcen_4829  XRE family transcriptional regulator  40.7 
 
 
123 aa  50.4  0.000007  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.584136  n/a   
 
 
-
 
NC_008543  Bcen2424_3337  XRE family transcriptional regulator  40.7 
 
 
123 aa  50.4  0.000007  Burkholderia cenocepacia HI2424  Bacteria  normal  0.98805  normal 
 
 
-
 
NC_010515  Bcenmc03_4178  helix-turn-helix domain-containing protein  40.7 
 
 
130 aa  50.8  0.000007  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.886419  normal 
 
 
-
 
NC_010717  PXO_01337  phage-related protei  32 
 
 
143 aa  45.8  0.0002  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.317958  n/a   
 
 
-
 
NC_008060  Bcen_0314  XRE family transcriptional regulator  39.68 
 
 
116 aa  45.8  0.0002  Burkholderia cenocepacia AU 1054  Bacteria  decreased coverage  0.0000214612  n/a   
 
 
-
 
NC_008542  Bcen2424_0797  XRE family transcriptional regulator  39.68 
 
 
116 aa  45.8  0.0002  Burkholderia cenocepacia HI2424  Bacteria  decreased coverage  0.0000538753  n/a   
 
 
-
 
NC_004578  PSPTO_3025  DNA-binding protein, putative  34.95 
 
 
120 aa  45.1  0.0003  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.111076  n/a   
 
 
-
 
NC_012917  PC1_2626  transcriptional regulator, XRE family  37.68 
 
 
137 aa  43.9  0.0007  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0239529  n/a   
 
 
-
 
NC_010508  Bcenmc03_0766  Cro/CI family transcriptional regulator  36.51 
 
 
106 aa  42.7  0.001  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.047378  normal 
 
 
-
 
NC_010002  Daci_2619  XRE family transcriptional regulator  38.75 
 
 
110 aa  43.1  0.001  Delftia acidovorans SPH-1  Bacteria  hitchhiker  0.000698613  hitchhiker  0.000000000219561 
 
 
-
 
NC_010002  Daci_2585  XRE family transcriptional regulator  38.75 
 
 
110 aa  43.1  0.001  Delftia acidovorans SPH-1  Bacteria  hitchhiker  0.00026111  hitchhiker  0.00000611184 
 
 
-
 
NC_007005  Psyr_2898  helix-hairpin-helix DNA-binding motif-containing protein  39.44 
 
 
120 aa  43.1  0.001  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.270535  normal  0.294834 
 
 
-
 
NC_007947  Mfla_2710  XRE family transcriptional regulator  41.07 
 
 
116 aa  42.4  0.002  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.00207223  normal 
 
 
-
 
NC_010322  PputGB1_3673  XRE family transcriptional regulator  35 
 
 
129 aa  42  0.003  Pseudomonas putida GB-1  Bacteria  normal  0.151534  hitchhiker  0.000000782403 
 
 
-
 
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