More than 300 homologs were found in PanDaTox collection
for query gene Hoch_6613 on replicon NC_013440
Organism: Haliangium ochraceum DSM 14365



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013440  Hoch_6613  selenocysteine-specific translation elongation factor  100 
 
 
648 aa  1269    Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0913819 
 
 
-
 
NC_008554  Sfum_1220  selenocysteine-specific translation elongation factor  43.39 
 
 
642 aa  499  1e-140  Syntrophobacter fumaroxidans MPOB  Bacteria  hitchhiker  0.00584658  normal  0.153868 
 
 
-
 
NC_009943  Dole_0653  selenocysteine-specific translation elongation factor  42.79 
 
 
636 aa  497  1e-139  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.0190681  n/a   
 
 
-
 
NC_002939  GSU0102  selenocysteine-specific translation elongation factor  43.45 
 
 
636 aa  480  1e-134  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_3415  selenocysteine-specific translation elongation factor SelB  43.23 
 
 
636 aa  477  1e-133  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_3567  selenocysteine-specific translation elongation factor  44.01 
 
 
636 aa  472  1e-132  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_0832  selenocysteine-specific translation elongation factor  42.64 
 
 
637 aa  473  1e-132  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_0035  selenocysteine-specific translation elongation factor  43.28 
 
 
636 aa  471  1.0000000000000001e-131  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0034  selenocysteine-specific translation elongation factor  43.28 
 
 
636 aa  471  1.0000000000000001e-131  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011145  AnaeK_0447  selenocysteine-specific translation elongation factor  46 
 
 
649 aa  466  9.999999999999999e-131  Anaeromyxobacter sp. K  Bacteria  normal  0.436923  n/a   
 
 
-
 
NC_009483  Gura_0164  selenocysteine-specific translation elongation factor  42.57 
 
 
636 aa  468  9.999999999999999e-131  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_0762  selenocysteine-specific translation elongation factor  40.16 
 
 
634 aa  464  1e-129  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.97012  normal 
 
 
-
 
NC_007519  Dde_3173  selenocysteine-specific translation elongation factor SelB  42.25 
 
 
644 aa  465  1e-129  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_0448  selenocysteine-specific translation elongation factor  45.69 
 
 
649 aa  464  1e-129  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2019  selenocysteine-specific translation elongation factor  40.16 
 
 
634 aa  459  9.999999999999999e-129  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0284313  n/a   
 
 
-
 
NC_009675  Anae109_4150  selenocysteine-specific translation elongation factor  45.85 
 
 
649 aa  459  9.999999999999999e-129  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  hitchhiker  0.00997007 
 
 
-
 
NC_007760  Adeh_0419  selenocysteine-specific translation elongation factor SelB  45.38 
 
 
649 aa  458  1e-127  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_2441  selenocysteine-specific translation elongation factor  42.24 
 
 
642 aa  452  1.0000000000000001e-126  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_008261  CPF_2372  selenocysteine-specific translation elongation factor  35.94 
 
 
635 aa  446  1.0000000000000001e-124  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_2084  selenocysteine-specific translation elongation factor  36.09 
 
 
635 aa  446  1.0000000000000001e-124  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_2086  selenocysteine-specific translation elongation factor  38.76 
 
 
657 aa  439  9.999999999999999e-123  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.0347898  n/a   
 
 
-
 
NC_011769  DvMF_2506  selenocysteine-specific translation elongation factor  41.16 
 
 
650 aa  436  1e-121  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_013216  Dtox_1647  selenocysteine-specific translation elongation factor  39.72 
 
 
644 aa  432  1e-119  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.00236334  hitchhiker  0.000000010303 
 
 
-
 
NC_009253  Dred_2185  selenocysteine-specific translation elongation factor  37.81 
 
 
635 aa  425  1e-117  Desulfotomaculum reducens MI-1  Bacteria  normal  0.573253  n/a   
 
 
-
 
NC_007644  Moth_2503  selenocysteine-specific translation elongation factor SelB  39.4 
 
 
634 aa  419  1e-116  Moorella thermoacetica ATCC 39073  Bacteria  decreased coverage  0.00650537  normal  0.143065 
 
 
-
 
NC_008346  Swol_2560  selenocysteine-specific translation elongation factor  40.69 
 
 
631 aa  419  9.999999999999999e-116  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.475206  n/a   
 
 
-
 
NC_013385  Adeg_0673  selenocysteine-specific translation elongation factor  41.95 
 
 
635 aa  411  1e-113  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1094  selenocysteine-specific translation elongation factor  38.97 
 
 
635 aa  403  1e-111  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_4266  selenocysteine-specific translation elongation factor  37.13 
 
 
634 aa  401  9.999999999999999e-111  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_1693  selenocysteine-specific translation elongation factor  43.07 
 
 
643 aa  397  1e-109  Eggerthella lenta DSM 2243  Bacteria  normal  normal  0.986647 
 
 
-
 
NC_013170  Ccur_11400  selenocysteine-specific elongation factor SelB  39.22 
 
 
657 aa  390  1e-107  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_1385  selenocysteine-specific translation elongation factor  36.53 
 
 
619 aa  376  1e-103  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008009  Acid345_4628  selenocysteine-specific translation elongation factor SelB  39.13 
 
 
628 aa  375  1e-102  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.889697 
 
 
-
 
NC_010718  Nther_1114  selenocysteine-specific translation elongation factor  33.75 
 
 
633 aa  368  1e-100  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.366063 
 
 
-
 
NC_013165  Shel_25300  selenocysteine-specific elongation factor SelB  38.78 
 
 
641 aa  361  3e-98  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal  0.291858 
 
 
-
 
NC_013522  Taci_0769  selenocysteine-specific translation elongation factor  38.06 
 
 
629 aa  340  5e-92  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  0.709604  n/a   
 
 
-
 
NC_008148  Rxyl_1982  selenocysteine-specific translation elongation factor SelB  41.3 
 
 
612 aa  337  2.9999999999999997e-91  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.869997  n/a   
 
 
-
 
NC_010002  Daci_3485  selenocysteine-specific translation elongation factor  37.79 
 
 
643 aa  334  2e-90  Delftia acidovorans SPH-1  Bacteria  normal  0.035122  normal 
 
 
-
 
NC_009668  Oant_2869  selenocysteine-specific translation elongation factor  37.2 
 
 
655 aa  323  6e-87  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0571166  n/a   
 
 
-
 
NC_008686  Pden_2825  selenocysteine-specific translation elongation factor  39.88 
 
 
643 aa  317  5e-85  Paracoccus denitrificans PD1222  Bacteria  normal  0.518854  normal 
 
 
-
 
NC_009972  Haur_1123  selenocysteine-specific translation elongation factor  33.9 
 
 
627 aa  315  9.999999999999999e-85  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_3539  selenocysteine-specific translation elongation factor  38.66 
 
 
641 aa  313  5.999999999999999e-84  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.791284  normal 
 
 
-
 
NC_007952  Bxe_B2548  selenocysteine-specific translation elongation factor SelB  36.81 
 
 
637 aa  313  5.999999999999999e-84  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.88579 
 
 
-
 
NC_008061  Bcen_4377  selenocysteine-specific translation elongation factor  38.66 
 
 
641 aa  313  5.999999999999999e-84  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.574205  n/a   
 
 
-
 
NC_008543  Bcen2424_3989  selenocysteine-specific translation elongation factor  38.66 
 
 
641 aa  313  5.999999999999999e-84  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_6555  selenocysteine-specific translation elongation factor  35.8 
 
 
637 aa  309  1.0000000000000001e-82  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0281066  hitchhiker  0.00125424 
 
 
-
 
NC_007511  Bcep18194_B2095  selenocysteine-specific translation elongation factor SelB  37.33 
 
 
641 aa  307  4.0000000000000004e-82  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_63530  selenocysteine-specific elongation factor  36.24 
 
 
641 aa  307  4.0000000000000004e-82  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.440984  normal 
 
 
-
 
NC_007298  Daro_1810  selenocysteine-specific translation elongation factor SelB  36.27 
 
 
627 aa  307  5.0000000000000004e-82  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.251758 
 
 
-
 
NC_010552  BamMC406_3884  selenocysteine-specific translation elongation factor  37.42 
 
 
641 aa  304  4.0000000000000003e-81  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0882754  normal 
 
 
-
 
NC_009656  PSPA7_5526  selenocysteine-specific elongation factor  35.78 
 
 
641 aa  298  2e-79  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_3266  selenocysteine-specific translation elongation factor  36.52 
 
 
643 aa  296  7e-79  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.901802  normal 
 
 
-
 
NC_010623  Bphy_4523  selenocysteine-specific translation elongation factor  36.36 
 
 
646 aa  295  1e-78  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_4592  selenocysteine-specific translation elongation factor  36.25 
 
 
641 aa  295  2e-78  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.251602  normal 
 
 
-
 
NC_008391  Bamb_3382  selenocysteine-specific translation elongation factor  36.49 
 
 
641 aa  294  3e-78  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_007650  BTH_II0712  selenocysteine-specific translation elongation factor  36.07 
 
 
641 aa  292  1e-77  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA1678  selenocysteine-specific translation elongation factor  37.2 
 
 
641 aa  283  6.000000000000001e-75  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1904  translation elongation factor, selenocysteine-specific  37.2 
 
 
651 aa  283  7.000000000000001e-75  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0725  selenocysteine-specific translation elongation factor  37.2 
 
 
641 aa  283  7.000000000000001e-75  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A2391  translation elongation factor, selenocysteine-specific  37.2 
 
 
651 aa  283  7.000000000000001e-75  Burkholderia pseudomallei 668  Bacteria  normal  0.451398  n/a   
 
 
-
 
NC_008784  BMASAVP1_1697  translation elongation factor, selenocysteine-specific  37.2 
 
 
651 aa  283  7.000000000000001e-75  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0576  translation elongation factor, selenocysteine-specific  37.2 
 
 
651 aa  283  7.000000000000001e-75  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2254  translation elongation factor, selenocysteine-specific  37.2 
 
 
651 aa  283  9e-75  Burkholderia pseudomallei 1106a  Bacteria  normal  0.0142669  n/a   
 
 
-
 
NC_011666  Msil_3332  selenocysteine-specific translation elongation factor  36.54 
 
 
691 aa  282  1e-74  Methylocella silvestris BL2  Bacteria  n/a    normal  0.665581 
 
 
-
 
NC_007492  Pfl01_2707  selenocysteine-specific translation elongation factor SelB  34.14 
 
 
636 aa  275  1.0000000000000001e-72  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.285696 
 
 
-
 
NC_010322  PputGB1_0537  selenocysteine-specific translation elongation factor  34.25 
 
 
640 aa  275  2.0000000000000002e-72  Pseudomonas putida GB-1  Bacteria  normal  0.82907  normal 
 
 
-
 
NC_002947  PP_0494  selenocysteine-specific translation elongation factor  34.7 
 
 
640 aa  274  4.0000000000000004e-72  Pseudomonas putida KT2440  Bacteria  normal  0.190998  normal 
 
 
-
 
NC_009512  Pput_0528  selenocysteine-specific translation elongation factor  34.7 
 
 
640 aa  273  9e-72  Pseudomonas putida F1  Bacteria  normal  normal  0.465523 
 
 
-
 
NC_010501  PputW619_0549  selenocysteine-specific translation elongation factor  33.94 
 
 
640 aa  269  1e-70  Pseudomonas putida W619  Bacteria  normal  normal  0.177696 
 
 
-
 
NC_010511  M446_2923  selenocysteine-specific translation elongation factor  37.94 
 
 
650 aa  266  1e-69  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_007575  Suden_0832  translation elongation factor, selenocysteine-specific  27.41 
 
 
611 aa  246  9.999999999999999e-64  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.5118  n/a   
 
 
-
 
NC_011353  ECH74115_4961  selenocysteinyl-tRNA-specific translation factor  31.69 
 
 
614 aa  239  1e-61  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.503297  normal 
 
 
-
 
NC_008577  Shewana3_0107  selenocysteine-specific translation elongation factor SelB  30.51 
 
 
673 aa  237  6e-61  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
CP001509  ECD_03445  selenocysteinyl-tRNA-specific translation factor  32.16 
 
 
614 aa  236  9e-61  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_03396  hypothetical protein  32.16 
 
 
614 aa  236  9e-61  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_0118  selenocysteine-specific translation elongation factor  31.91 
 
 
614 aa  236  1.0000000000000001e-60  Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_0110  selenocysteine-specific translation elongation factor  30.85 
 
 
681 aa  236  1.0000000000000001e-60  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A3795  selenocysteinyl-tRNA-specific translation factor  31.91 
 
 
614 aa  236  1.0000000000000001e-60  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_4088  selenocysteinyl-tRNA-specific translation factor  32.32 
 
 
614 aa  235  2.0000000000000002e-60  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E4005  selenocysteinyl-tRNA-specific translation factor  31.8 
 
 
614 aa  235  2.0000000000000002e-60  Shigella boydii CDC 3083-94  Bacteria  normal  0.799296  n/a   
 
 
-
 
NC_009714  CHAB381_0766  selenocysteine-specific translation elongation factor  26.81 
 
 
605 aa  235  2.0000000000000002e-60  Campylobacter hominis ATCC BAA-381  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_0443  selenocysteine-specific translation elongation factor  29.92 
 
 
635 aa  235  2.0000000000000002e-60  Shewanella pealeana ATCC 700345  Bacteria  normal  0.363793  n/a   
 
 
-
 
NC_008322  Shewmr7_0102  selenocysteine-specific translation elongation factor SelB  30.35 
 
 
673 aa  235  2.0000000000000002e-60  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_009436  Ent638_0141  selenocysteinyl-tRNA-specific translation factor  31.33 
 
 
621 aa  234  3e-60  Enterobacter sp. 638  Bacteria  normal  0.645753  normal  0.973594 
 
 
-
 
NC_010498  EcSMS35_3918  selenocysteinyl-tRNA-specific translation factor  32.16 
 
 
614 aa  234  3e-60  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.696319 
 
 
-
 
NC_011663  Sbal223_0109  selenocysteine-specific translation elongation factor  30.95 
 
 
681 aa  234  4.0000000000000004e-60  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_0107  selenocysteine-specific translation elongation factor SelB  30.51 
 
 
673 aa  233  6e-60  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_3075  selenocysteine-specific translation elongation factor  33.94 
 
 
657 aa  233  7.000000000000001e-60  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A4067  selenocysteinyl-tRNA-specific translation factor  31.66 
 
 
616 aa  233  8.000000000000001e-60  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_013512  Sdel_2083  selenocysteine-specific translation elongation factor  28.53 
 
 
611 aa  233  8.000000000000001e-60  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_0106  selenocysteine-specific translation elongation factor  30.43 
 
 
673 aa  233  1e-59  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011149  SeAg_B3896  selenocysteinyl-tRNA-specific translation factor  31.66 
 
 
616 aa  232  1e-59  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_0123  selenocysteinyl-tRNA-specific translation factor  31.6 
 
 
614 aa  233  1e-59  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A3882  selenocysteinyl-tRNA-specific translation factor  31.5 
 
 
616 aa  231  2e-59  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A3960  selenocysteinyl-tRNA-specific translation factor  31.65 
 
 
616 aa  232  2e-59  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.293877  normal  0.449434 
 
 
-
 
NC_011083  SeHA_C4005  selenocysteinyl-tRNA-specific translation factor  31.66 
 
 
616 aa  231  3e-59  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.187255 
 
 
-
 
NC_009665  Shew185_0105  selenocysteine-specific translation elongation factor  30.53 
 
 
681 aa  231  4e-59  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009802  CCC13826_0756  selenocysteine-specific translation elongation factor  45.17 
 
 
606 aa  228  2e-58  Campylobacter concisus 13826  Bacteria  normal  n/a   
 
 
-
 
NC_009715  CCV52592_0541  selenocysteine-specific translation elongation factor  46.74 
 
 
605 aa  223  8e-57  Campylobacter curvus 525.92  Bacteria  hitchhiker  0.00149249  n/a   
 
 
-
 
NC_008599  CFF8240_1547  selenocysteine-specific translation elongation factor  27.05 
 
 
601 aa  221  3e-56  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
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