More than 300 homologs were found in PanDaTox collection
for query gene HMPREF0424_0682 on replicon NC_013721
Organism: Gardnerella vaginalis 409-05



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013721  HMPREF0424_0682  HAD hydrolase, family IA, variant 3  100 
 
 
226 aa  469  1.0000000000000001e-131  Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_010816  BLD_0792  beta-phosphoglucomutase  41.51 
 
 
215 aa  166  2.9999999999999998e-40  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_2790  HAD family hydrolase  33.51 
 
 
223 aa  132  3.9999999999999996e-30  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0269  haloacid dehalogenase, IA family protein  33.68 
 
 
217 aa  119  4.9999999999999996e-26  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_0260  haloacid dehalogenase, IA family protein  33.68 
 
 
217 aa  118  6e-26  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_013165  Shel_01320  haloacid dehalogenase superfamily protein, subfamily IA, variant 3 with third motif having DD or ED  29.63 
 
 
219 aa  94  2e-18  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_4825  HAD-superfamily hydrolase, subfamily IA, variant 3  34.57 
 
 
224 aa  89.4  4e-17  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013457  VEA_000391  2-deoxyglucose-6-phosphate hydrolase YniC  28.49 
 
 
218 aa  87.8  1e-16  Vibrio sp. Ex25  Bacteria  normal  0.0106831  n/a   
 
 
-
 
NC_013203  Apar_0889  HAD-superfamily hydrolase, subfamily IA, variant 3  26.88 
 
 
220 aa  88.2  1e-16  Atopobium parvulum DSM 20469  Bacteria  decreased coverage  0.00000345367  normal  0.0902559 
 
 
-
 
NC_009441  Fjoh_2690  HAD family hydrolase  30.21 
 
 
221 aa  86.3  4e-16  Flavobacterium johnsoniae UW101  Bacteria  normal  0.365385  n/a   
 
 
-
 
NC_013510  Tcur_2293  HAD-superfamily hydrolase, subfamily IA, variant 3  28.73 
 
 
218 aa  82.8  0.000000000000004  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.0000494788  n/a   
 
 
-
 
NC_013730  Slin_2846  HAD-superfamily hydrolase, subfamily IA, variant 3  29.74 
 
 
226 aa  79  0.00000000000005  Spirosoma linguale DSM 74  Bacteria  normal  0.281035  normal  0.462582 
 
 
-
 
NC_013093  Amir_2212  HAD-superfamily hydrolase, subfamily IA, variant 3  33.33 
 
 
220 aa  78.6  0.00000000000007  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_05174  phosphoglycolate phosphatase  31.61 
 
 
256 aa  78.6  0.00000000000007  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011661  Dtur_0461  HAD-superfamily hydrolase, subfamily IA, variant 3  27.51 
 
 
217 aa  78.2  0.00000000000009  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_013203  Apar_0864  thiamine pyrophosphokinase  30.73 
 
 
454 aa  77.8  0.0000000000001  Atopobium parvulum DSM 20469  Bacteria  unclonable  0.000000134495  normal  0.492449 
 
 
-
 
NC_013517  Sterm_2266  HAD-superfamily hydrolase, subfamily IA, variant 3  29.67 
 
 
220 aa  76.6  0.0000000000003  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_1550  HAD-superfamily hydrolase, subfamily IA, variant 3  30.61 
 
 
249 aa  76.6  0.0000000000003  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.204001 
 
 
-
 
NC_009953  Sare_4356  HAD family hydrolase  30.46 
 
 
233 aa  76.6  0.0000000000003  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.582602 
 
 
-
 
NC_009380  Strop_3972  HAD family hydrolase  29.31 
 
 
241 aa  75.9  0.0000000000005  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_4498  HAD-superfamily hydrolase subfamily IA, variant 3  28.19 
 
 
223 aa  75.1  0.0000000000007  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.511661  normal  0.0143777 
 
 
-
 
NC_009901  Spea_0424  2-deoxyglucose-6-phosphatase  28.57 
 
 
222 aa  74.3  0.000000000001  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_1517  HAD family hydrolase  27.13 
 
 
216 aa  74.3  0.000000000001  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_1566  HAD family hydrolase  27.13 
 
 
216 aa  74.7  0.000000000001  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_3772  2-deoxyglucose-6-phosphatase  27.6 
 
 
218 aa  74.3  0.000000000001  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1912  2-deoxyglucose-6-phosphatase  27.64 
 
 
223 aa  73.9  0.000000000002  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.0120822  n/a   
 
 
-
 
NC_009436  Ent638_1717  2-deoxyglucose-6-phosphatase  28.57 
 
 
223 aa  73.6  0.000000000003  Enterobacter sp. 638  Bacteria  normal  normal  0.886251 
 
 
-
 
NC_013421  Pecwa_2205  2-deoxyglucose-6-phosphatase  28 
 
 
221 aa  72  0.000000000006  Pectobacterium wasabiae WPP163  Bacteria  normal  0.100097  n/a   
 
 
-
 
NC_009523  RoseRS_0332  HAD family hydrolase  30.18 
 
 
232 aa  72.4  0.000000000006  Roseiflexus sp. RS-1  Bacteria  normal  0.827004  normal  0.0405623 
 
 
-
 
NC_009092  Shew_3425  2-deoxyglucose-6-phosphatase  28.19 
 
 
223 aa  72  0.000000000006  Shewanella loihica PV-4  Bacteria  hitchhiker  0.000919178  normal 
 
 
-
 
NC_003909  BCE_4276  HAD superfamily hydrolase  30.93 
 
 
220 aa  71.6  0.000000000009  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_1853  HAD family hydrolase  28.8 
 
 
235 aa  71.6  0.000000000009  Frankia sp. EAN1pec  Bacteria  normal  0.147437  normal  0.0157174 
 
 
-
 
NC_013457  VEA_001299  CbbY family protein  29.03 
 
 
216 aa  71.6  0.000000000009  Vibrio sp. Ex25  Bacteria  normal  0.916657  n/a   
 
 
-
 
NC_013171  Apre_0101  HAD-superfamily hydrolase, subfamily IA, variant 3  25.4 
 
 
218 aa  71.6  0.000000000009  Anaerococcus prevotii DSM 20548  Bacteria  hitchhiker  0.00251058  n/a   
 
 
-
 
NC_013159  Svir_22200  haloacid dehalogenase superfamily protein, subfamily IA, variant 3 with third motif having DD or ED  31.07 
 
 
217 aa  71.2  0.00000000001  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.172111  normal 
 
 
-
 
NC_006274  BCZK3956  HAD superfamily hydrolase  30.41 
 
 
220 aa  71.2  0.00000000001  Bacillus cereus E33L  Bacteria  normal  0.945579  n/a   
 
 
-
 
NC_013131  Caci_2412  HAD-superfamily hydrolase, subfamily IA, variant 3  27.89 
 
 
222 aa  70.9  0.00000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_0641  HAD family hydrolase  26.34 
 
 
220 aa  71.2  0.00000000001  Marinomonas sp. MWYL1  Bacteria  normal  0.950078  normal  0.0427696 
 
 
-
 
NC_013132  Cpin_6618  HAD-superfamily hydrolase, subfamily IA, variant 3  28.27 
 
 
217 aa  70.9  0.00000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.022243  hitchhiker  0.00896914 
 
 
-
 
NC_010581  Bind_0935  HAD family hydrolase  29.03 
 
 
235 aa  70.9  0.00000000001  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.941543  normal 
 
 
-
 
NC_005957  BT9727_3945  HAD superfamily hydrolase  30.57 
 
 
221 aa  70.9  0.00000000002  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_3074  HAD family hydrolase  28.11 
 
 
222 aa  70.9  0.00000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_1743  HAD-superfamily hydrolase, subfamily IA, variant 3  27.23 
 
 
227 aa  70.5  0.00000000002  Geobacillus sp. WCH70  Bacteria  normal  0.293469  n/a   
 
 
-
 
NC_008577  Shewana3_0432  2-deoxyglucose-6-phosphatase  27.42 
 
 
218 aa  70.9  0.00000000002  Shewanella sp. ANA-3  Bacteria  unclonable  0.00000000498152  normal 
 
 
-
 
NC_011773  BCAH820_4222  hydrolase, haloacid dehalogenase-like family  30.57 
 
 
220 aa  70.9  0.00000000002  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011059  Paes_0473  HAD-superfamily hydrolase, subfamily IA, variant 3  28.57 
 
 
211 aa  70.1  0.00000000003  Prosthecochloris aestuarii DSM 271  Bacteria  hitchhiker  0.0000148872  normal 
 
 
-
 
NC_009438  Sputcn32_3410  2-deoxyglucose-6-phosphatase  28.95 
 
 
217 aa  69.7  0.00000000003  Shewanella putrefaciens CN-32  Bacteria  normal  0.0110715  n/a   
 
 
-
 
NC_008700  Sama_0381  2-deoxyglucose-6-phosphatase  28.12 
 
 
221 aa  69.7  0.00000000003  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.0071153  normal  0.324571 
 
 
-
 
NC_009997  Sbal195_4047  2-deoxyglucose-6-phosphatase  28.04 
 
 
219 aa  69.3  0.00000000004  Shewanella baltica OS195  Bacteria  hitchhiker  0.0000965281  normal  0.234971 
 
 
-
 
NC_005945  BAS4107  HAD superfamily hydrolase  30.05 
 
 
221 aa  68.9  0.00000000006  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0397  beta-phosphoglucomutase family hydrolase  28.27 
 
 
223 aa  68.9  0.00000000006  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_4427  HAD superfamily hydrolase  30.05 
 
 
221 aa  68.9  0.00000000006  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0284  2-deoxyglucose-6-phosphatase  25.13 
 
 
221 aa  68.6  0.00000000007  Shewanella woodyi ATCC 51908  Bacteria  normal  hitchhiker  0.00458991 
 
 
-
 
NC_010184  BcerKBAB4_4056  HAD family hydrolase  28.87 
 
 
215 aa  68.9  0.00000000007  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_2523  HAD family hydrolase  25.82 
 
 
219 aa  68.6  0.00000000009  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  hitchhiker  0.000000000119514  n/a   
 
 
-
 
NC_008321  Shewmr4_0436  2-deoxyglucose-6-phosphatase  27.42 
 
 
218 aa  68.2  0.0000000001  Shewanella sp. MR-4  Bacteria  unclonable  0.0000000024214  normal 
 
 
-
 
NC_013517  Sterm_2267  HAD-superfamily hydrolase, subfamily IA, variant 3  25.26 
 
 
219 aa  67.8  0.0000000001  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_008322  Shewmr7_3593  2-deoxyglucose-6-phosphatase  26.88 
 
 
218 aa  68.2  0.0000000001  Shewanella sp. MR-7  Bacteria  unclonable  0.0000011766  normal  0.672534 
 
 
-
 
NC_013947  Snas_4073  HAD-superfamily hydrolase subfamily IA, variant 3  24.32 
 
 
219 aa  67.4  0.0000000002  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.358464  normal 
 
 
-
 
NC_011898  Ccel_3242  beta-phosphoglucomutase  27.08 
 
 
219 aa  67  0.0000000002  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_008309  HS_0674  phosphatase  27.75 
 
 
215 aa  67  0.0000000002  Haemophilus somnus 129PT  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_0780  HAD family hydrolase  27.66 
 
 
227 aa  67.4  0.0000000002  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A1419  2-deoxyglucose-6-phosphatase  26.6 
 
 
222 aa  66.6  0.0000000003  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.744627  hitchhiker  0.00259415 
 
 
-
 
NC_009767  Rcas_0853  HAD family hydrolase  28.99 
 
 
221 aa  66.6  0.0000000003  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.0114666 
 
 
-
 
NC_010320  Teth514_1040  HAD family hydrolase  26.29 
 
 
226 aa  66.6  0.0000000003  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.00000171478  n/a   
 
 
-
 
NC_009665  Shew185_3926  2-deoxyglucose-6-phosphatase  26.98 
 
 
219 aa  66.2  0.0000000004  Shewanella baltica OS185  Bacteria  hitchhiker  0.00000000238408  n/a   
 
 
-
 
NC_011080  SNSL254_A1436  2-deoxyglucose-6-phosphatase  26.6 
 
 
222 aa  66.2  0.0000000004  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.905236  normal 
 
 
-
 
NC_011083  SeHA_C1451  2-deoxyglucose-6-phosphatase  26.6 
 
 
222 aa  66.2  0.0000000004  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.913842  normal 
 
 
-
 
NC_007954  Sden_3378  2-deoxyglucose-6-phosphatase  27.46 
 
 
225 aa  66.2  0.0000000004  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B1849  2-deoxyglucose-6-phosphatase  26.6 
 
 
222 aa  66.2  0.0000000004  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  hitchhiker  0.0029739  n/a   
 
 
-
 
NC_011772  BCG9842_B0922  hydrolase, haloacid dehalogenase-like family  29.47 
 
 
235 aa  66.2  0.0000000004  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A2022  2-deoxyglucose-6-phosphatase  26.6 
 
 
222 aa  66.2  0.0000000004  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_3906  2-deoxyglucose-6-phosphatase  26.98 
 
 
219 aa  66.2  0.0000000004  Shewanella baltica OS155  Bacteria  unclonable  0.000000000443869  n/a   
 
 
-
 
NC_004347  SO_0431  2-deoxyglucose-6-phosphatase  28.28 
 
 
217 aa  65.9  0.0000000005  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009338  Mflv_3054  HAD family hydrolase  26.15 
 
 
224 aa  65.5  0.0000000006  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.751068  normal  0.223571 
 
 
-
 
NC_013595  Sros_5916  HAD family hydrolase  25.82 
 
 
218 aa  65.5  0.0000000006  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0345843  normal  0.0351614 
 
 
-
 
NC_010003  Pmob_0452  HAD family hydrolase  25.76 
 
 
221 aa  65.5  0.0000000007  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_004116  SAG0181  HAD superfamily hydrolase  24.76 
 
 
214 aa  65.1  0.0000000008  Streptococcus agalactiae 2603V/R  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A4313  hydrolase, haloacid dehalogenase-like family  28.88 
 
 
235 aa  65.1  0.0000000008  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_0437  2-deoxyglucose-6-phosphatase  26.21 
 
 
221 aa  65.1  0.0000000008  Shewanella sediminis HAW-EB3  Bacteria  hitchhiker  0.000647119  hitchhiker  0.00000756317 
 
 
-
 
NC_010338  Caul_3346  HAD family hydrolase  28.28 
 
 
221 aa  65.1  0.0000000008  Caulobacter sp. K31  Bacteria  normal  0.363754  normal 
 
 
-
 
NC_009664  Krad_1843  HAD-superfamily hydrolase, subfamily IA, variant 3  29.26 
 
 
241 aa  65.1  0.0000000009  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.101722  normal 
 
 
-
 
NC_011663  Sbal223_3849  2-deoxyglucose-6-phosphatase  26.98 
 
 
219 aa  65.1  0.000000001  Shewanella baltica OS223  Bacteria  normal  0.184484  hitchhiker  0.000000000456944 
 
 
-
 
NC_009456  VC0395_0037  haloacid dehalogenase/epoxide hydrolase family protein  26.88 
 
 
219 aa  64.7  0.000000001  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_3160  HAD family hydrolase  30.98 
 
 
228 aa  64.7  0.000000001  Mycobacterium sp. JLS  Bacteria  normal  0.0720917  normal  0.533727 
 
 
-
 
NC_008146  Mmcs_3148  HAD family hydrolase  30.98 
 
 
228 aa  64.7  0.000000001  Mycobacterium sp. MCS  Bacteria  normal  0.0274068  n/a   
 
 
-
 
NC_013093  Amir_7029  HAD-superfamily hydrolase, subfamily IA, variant 3  26.97 
 
 
213 aa  64.3  0.000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_3210  HAD family hydrolase  30.98 
 
 
228 aa  64.7  0.000000001  Mycobacterium sp. KMS  Bacteria  normal  0.742759  normal  0.278604 
 
 
-
 
NC_010172  Mext_0990  HAD family hydrolase  25.91 
 
 
253 aa  63.9  0.000000002  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.480228 
 
 
-
 
NC_011369  Rleg2_0846  HAD-superfamily hydrolase, subfamily IA, variant 3  25.96 
 
 
231 aa  63.9  0.000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.814852 
 
 
-
 
NC_007005  Psyr_5006  HAD family hydrolase  26.5 
 
 
229 aa  63.9  0.000000002  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_1286  HAD family hydrolase  27.44 
 
 
229 aa  63.5  0.000000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_39300  haloacid dehalogenase superfamily protein, subfamily IA, variant 3 with third motif having DD or ED  26.74 
 
 
218 aa  63.9  0.000000002  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_0953  HAD-superfamily hydrolase, subfamily IA, variant 3  25.91 
 
 
253 aa  63.9  0.000000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_3528  HAD family hydrolase  27.75 
 
 
222 aa  63.5  0.000000002  Psychromonas ingrahamii 37  Bacteria  normal  0.894258  hitchhiker  0.00350401 
 
 
-
 
NC_008726  Mvan_3473  HAD family hydrolase  28.87 
 
 
243 aa  63.9  0.000000002  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_3073  HAD family hydrolase  24.19 
 
 
223 aa  63.5  0.000000002  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.00582956  n/a   
 
 
-
 
NC_009800  EcHS_A1808  2-deoxyglucose-6-phosphatase  25 
 
 
222 aa  63.2  0.000000003  Escherichia coli HS  Bacteria  normal  0.305682  n/a   
 
 
-
 
NC_009801  EcE24377A_1947  2-deoxyglucose-6-phosphatase  25 
 
 
222 aa  63.2  0.000000003  Escherichia coli E24377A  Bacteria  normal  0.504113  n/a   
 
 
-
 
NC_007958  RPD_3933  HAD family hydrolase  27.62 
 
 
271 aa  63.2  0.000000003  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
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