241 homologs were found in PanDaTox collection
for query gene Gobs_4652 on replicon NC_013757
Organism: Geodermatophilus obscurus DSM 43160



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013757  Gobs_4652  cell envelope-related transcriptional attenuator  100 
 
 
717 aa  1348    Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1348  Transcriptional regulator-like protein  33.46 
 
 
505 aa  171  3e-41  Streptosporangium roseum DSM 43021  Bacteria  normal  0.958942  normal 
 
 
-
 
NC_007333  Tfu_2526  cell envelope-related transcriptional attenuator  29.11 
 
 
478 aa  155  2.9999999999999998e-36  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_6814  cell envelope-related transcriptional attenuator  27.77 
 
 
1336 aa  154  7e-36  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_5902  cell envelope-related transcriptional attenuator  31.8 
 
 
625 aa  154  7e-36  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_1558  cell envelope-related transcriptional attenuator  32.31 
 
 
545 aa  149  2.0000000000000003e-34  Frankia sp. CcI3  Bacteria  normal  normal  0.931439 
 
 
-
 
NC_013441  Gbro_3920  cell envelope-related function transcriptional attenuator, LytR/CpsA family  28.31 
 
 
734 aa  148  4.0000000000000006e-34  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_0624  cell envelope-related transcriptional attenuator  30.11 
 
 
481 aa  146  2e-33  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_0030  cell envelope-related transcriptional attenuator  32.51 
 
 
506 aa  142  1.9999999999999998e-32  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0770441 
 
 
-
 
NC_013595  Sros_1363  Transcriptional regulator-like protein  28.12 
 
 
530 aa  142  3e-32  Streptosporangium roseum DSM 43021  Bacteria  normal  0.640186  normal 
 
 
-
 
NC_014165  Tbis_0717  cell envelope-related transcriptional attenuator  33.94 
 
 
504 aa  138  3.0000000000000003e-31  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0100935 
 
 
-
 
NC_013235  Namu_4976  cell envelope-related transcriptional attenuator  32.84 
 
 
551 aa  137  7.000000000000001e-31  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_3877  cell envelope-related transcriptional attenuator  29.42 
 
 
497 aa  137  9e-31  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_4114  cell envelope-related transcriptional attenuator  28.63 
 
 
549 aa  135  3e-30  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_1666  cell envelope-related transcriptional attenuator  29.26 
 
 
649 aa  134  9e-30  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_4096  cell envelope-related transcriptional attenuator  28.36 
 
 
468 aa  133  1.0000000000000001e-29  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_0412  cell envelope-related transcriptional attenuator  30.9 
 
 
491 aa  132  2.0000000000000002e-29  Acidothermus cellulolyticus 11B  Bacteria  normal  0.245301  normal 
 
 
-
 
NC_014165  Tbis_3514  cell envelope-related transcriptional attenuator  31.23 
 
 
468 aa  131  4.0000000000000003e-29  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_5087  cell envelope-related transcriptional attenuator  28.11 
 
 
687 aa  128  3e-28  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_0411  cell envelope-related transcriptional attenuator  28.24 
 
 
520 aa  127  7e-28  Acidothermus cellulolyticus 11B  Bacteria  normal  0.118906  normal 
 
 
-
 
NC_007777  Francci3_0712  cell envelope-related transcriptional attenuator  31.68 
 
 
573 aa  127  1e-27  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_6827  cell envelope-related transcriptional attenuator  30.89 
 
 
516 aa  126  1e-27  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_9260  Transcriptional regulator-like protein  28.96 
 
 
481 aa  122  1.9999999999999998e-26  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.969868 
 
 
-
 
NC_013757  Gobs_4335  cell envelope-related transcriptional attenuator  31.22 
 
 
521 aa  122  1.9999999999999998e-26  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.0591559  n/a   
 
 
-
 
NC_009921  Franean1_1307  cell envelope-related transcriptional attenuator  30.25 
 
 
520 aa  122  1.9999999999999998e-26  Frankia sp. EAN1pec  Bacteria  normal  0.386656  normal 
 
 
-
 
NC_008699  Noca_0784  cell envelope-related transcriptional attenuator  29.75 
 
 
400 aa  120  7.999999999999999e-26  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_4896  cell envelope-related transcriptional attenuator  27.77 
 
 
701 aa  119  9.999999999999999e-26  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_4513  cell envelope-related transcriptional attenuator  27.67 
 
 
699 aa  119  1.9999999999999998e-25  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4600  cell envelope-related transcriptional attenuator  27.67 
 
 
699 aa  119  1.9999999999999998e-25  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_10837  hypothetical protein  26.75 
 
 
684 aa  118  3e-25  Mycobacterium tuberculosis F11  Bacteria  normal  hitchhiker  0.000372154 
 
 
-
 
NC_013131  Caci_7541  cell envelope-related transcriptional attenuator  26.9 
 
 
540 aa  116  1.0000000000000001e-24  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.371514 
 
 
-
 
NC_009921  Franean1_1248  cell envelope-related transcriptional attenuator  33.1 
 
 
512 aa  117  1.0000000000000001e-24  Frankia sp. EAN1pec  Bacteria  normal  0.375848  normal  0.0192244 
 
 
-
 
NC_007333  Tfu_2542  cell envelope-related transcriptional attenuator  27.55 
 
 
509 aa  114  5e-24  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0728  cell envelope-related transcriptional attenuator  26.6 
 
 
618 aa  114  7.000000000000001e-24  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.0188197 
 
 
-
 
NC_013131  Caci_7619  cell envelope-related transcriptional attenuator  34.73 
 
 
379 aa  112  2.0000000000000002e-23  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_3496  cell envelope-related transcriptional attenuator  33.33 
 
 
486 aa  111  5e-23  Frankia sp. CcI3  Bacteria  normal  0.625789  normal  0.409021 
 
 
-
 
NC_013159  Svir_37600  cell envelope-related function transcriptional attenuator common domain protein  28.17 
 
 
619 aa  106  1e-21  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.760055  normal  0.249296 
 
 
-
 
NC_014210  Ndas_0934  cell envelope-related transcriptional attenuator  25.84 
 
 
480 aa  105  4e-21  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.0202033 
 
 
-
 
NC_007333  Tfu_2956  cell envelope-related transcriptional attenuator  26.92 
 
 
453 aa  103  9e-21  Thermobifida fusca YX  Bacteria  normal  0.482149  n/a   
 
 
-
 
NC_012669  Bcav_1166  cell envelope-related protein transcriptional attenuator  35.25 
 
 
395 aa  100  7e-20  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_3302  cell envelope-related transcriptional attenuator  32.23 
 
 
406 aa  100  9e-20  Nocardioides sp. JS614  Bacteria  normal  0.0160587  n/a   
 
 
-
 
NC_013521  Sked_08570  cell envelope-related function transcriptional attenuator common domain protein  31.27 
 
 
365 aa  98.2  5e-19  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.671315  normal  0.595892 
 
 
-
 
NC_013174  Jden_1864  cell envelope-related transcriptional attenuator  30.64 
 
 
391 aa  97.4  9e-19  Jonesia denitrificans DSM 20603  Bacteria  normal  0.383316  normal  0.036217 
 
 
-
 
NC_012669  Bcav_1167  cell envelope-related protein transcriptional attenuator  29.01 
 
 
417 aa  96.3  2e-18  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_7618  cell envelope-related transcriptional attenuator  27.84 
 
 
643 aa  96.3  2e-18  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_007777  Francci3_0711  cell envelope-related transcriptional attenuator  29.68 
 
 
526 aa  94  9e-18  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_30000  cell envelope-related function transcriptional attenuator common domain  35.23 
 
 
395 aa  93.2  1e-17  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_4745  cell envelope-related transcriptional attenuator  26.27 
 
 
584 aa  94  1e-17  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_4529  cell envelope-related transcriptional attenuator  32.56 
 
 
365 aa  92  3e-17  Nakamurella multipartita DSM 44233  Bacteria  normal  0.25457  normal 
 
 
-
 
NC_011886  Achl_0126  cell envelope-related transcriptional attenuator  27.99 
 
 
499 aa  92  3e-17  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013721  HMPREF0424_0589  putative transcriptional regulator  27.72 
 
 
498 aa  92.4  3e-17  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.581304 
 
 
-
 
NC_013510  Tcur_4461  cell envelope-related transcriptional attenuator  27.43 
 
 
390 aa  92  4e-17  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_6349  cell envelope-related transcriptional attenuator  33.99 
 
 
410 aa  91.3  5e-17  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_2383  cell envelope-related transcriptional attenuator  30.25 
 
 
389 aa  90.9  7e-17  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0868762  hitchhiker  0.00772059 
 
 
-
 
NC_008541  Arth_2228  cell envelope-related transcriptional attenuator  27.94 
 
 
521 aa  87.8  6e-16  Arthrobacter sp. FB24  Bacteria  hitchhiker  0.000756142  n/a   
 
 
-
 
NC_014151  Cfla_3214  cell envelope-related transcriptional attenuator  31.13 
 
 
443 aa  86.3  0.000000000000002  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.00000235319 
 
 
-
 
NC_009953  Sare_5020  cell envelope-related transcriptional attenuator  28.89 
 
 
414 aa  82.4  0.00000000000003  Salinispora arenicola CNS-205  Bacteria  normal  0.417569  hitchhiker  0.000783217 
 
 
-
 
NC_013159  Svir_28900  cell envelope-related function transcriptional attenuator common domain protein  26.14 
 
 
522 aa  81.6  0.00000000000004  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.385343 
 
 
-
 
NC_009338  Mflv_1142  cell envelope-related transcriptional attenuator  29.19 
 
 
409 aa  81.6  0.00000000000005  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.671395  normal  0.110733 
 
 
-
 
NC_009565  TBFG_13519  hypothetical protein  26.6 
 
 
512 aa  81.3  0.00000000000005  Mycobacterium tuberculosis F11  Bacteria  normal  normal  0.100718 
 
 
-
 
NC_013441  Gbro_0172  cell envelope-related function transcriptional attenuator, LytR/CpsA family  28.89 
 
 
307 aa  81.3  0.00000000000006  Gordonia bronchialis DSM 43247  Bacteria  normal  0.954157  n/a   
 
 
-
 
NC_013521  Sked_08580  cell envelope-related function transcriptional attenuator common domain protein  33.51 
 
 
396 aa  81.3  0.00000000000007  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.783991  normal  0.393457 
 
 
-
 
NC_014210  Ndas_0935  cell envelope-related transcriptional attenuator  26.12 
 
 
465 aa  80.9  0.00000000000007  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.0761113 
 
 
-
 
NC_013203  Apar_0187  cell envelope-related transcriptional attenuator  25.79 
 
 
563 aa  80.9  0.00000000000008  Atopobium parvulum DSM 20469  Bacteria  normal  normal  0.234515 
 
 
-
 
NC_013530  Xcel_2594  cell envelope-related transcriptional attenuator  30.19 
 
 
442 aa  80.5  0.00000000000009  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0120  Transcriptional regulator-like protein  26.69 
 
 
326 aa  80.5  0.00000000000009  Streptosporangium roseum DSM 43021  Bacteria  normal  0.224299  normal 
 
 
-
 
NC_009921  Franean1_5205  cell envelope-related transcriptional attenuator  25.59 
 
 
560 aa  80.1  0.0000000000001  Frankia sp. EAN1pec  Bacteria  normal  0.0714783  normal 
 
 
-
 
NC_011886  Achl_1965  cell envelope-related transcriptional attenuator  30.52 
 
 
487 aa  79.7  0.0000000000002  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.0000000312518 
 
 
-
 
NC_009380  Strop_4510  transcription attenuator LytR  27.56 
 
 
420 aa  77.8  0.0000000000006  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_0136  cell envelope-related transcriptional attenuator  28.37 
 
 
466 aa  77.4  0.0000000000008  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_007333  Tfu_2567  cell envelope-related transcriptional attenuator  27.6 
 
 
404 aa  76.6  0.000000000001  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_08920  cell envelope-related function transcriptional attenuator common domain protein  28.62 
 
 
381 aa  77  0.000000000001  Micrococcus luteus NCTC 2665  Bacteria  normal  0.667016  n/a   
 
 
-
 
NC_014165  Tbis_0046  cell envelope-related transcriptional attenuator  26.71 
 
 
320 aa  76.3  0.000000000002  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_1865  cell envelope-related transcriptional attenuator  26.74 
 
 
434 aa  75.1  0.000000000004  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.0368682 
 
 
-
 
NC_013093  Amir_1037  cell envelope-related transcriptional attenuator  25.06 
 
 
732 aa  75.1  0.000000000004  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_1591  cell envelope-related transcriptional attenuator  29.15 
 
 
336 aa  75.1  0.000000000004  Actinosynnema mirum DSM 43827  Bacteria  normal  0.230007  n/a   
 
 
-
 
NC_014210  Ndas_3959  cell envelope-related transcriptional attenuator  28.16 
 
 
463 aa  74.7  0.000000000006  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_1025  cell envelope-related transcriptional attenuator  29.33 
 
 
434 aa  74.7  0.000000000006  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.11457  n/a   
 
 
-
 
NC_012669  Bcav_3844  cell envelope-related protein transcriptional attenuator  38.46 
 
 
373 aa  74.3  0.000000000007  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_3034  cell envelope-related transcriptional attenuator  27.65 
 
 
379 aa  73.9  0.00000000001  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.63975 
 
 
-
 
NC_013131  Caci_8771  cell envelope-related transcriptional attenuator  27.86 
 
 
547 aa  72.8  0.00000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.359858 
 
 
-
 
NC_013093  Amir_6348  cell envelope-related transcriptional attenuator  26.14 
 
 
517 aa  72  0.00000000004  Actinosynnema mirum DSM 43827  Bacteria  normal  0.352796  n/a   
 
 
-
 
NC_010816  BLD_0762  transcriptional regulator  25.15 
 
 
489 aa  72  0.00000000004  Bifidobacterium longum DJO10A  Bacteria  normal  0.245721  n/a   
 
 
-
 
NC_013172  Bfae_09330  cell envelope-related function transcriptional attenuator common domain  28.83 
 
 
349 aa  71.2  0.00000000006  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_5903  cell envelope-related transcriptional attenuator  28.91 
 
 
508 aa  70.1  0.0000000001  Frankia sp. EAN1pec  Bacteria  normal  normal  0.667474 
 
 
-
 
NC_013174  Jden_2257  cell envelope-related transcriptional attenuator  27.03 
 
 
362 aa  69.7  0.0000000002  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.518809 
 
 
-
 
NC_009077  Mjls_1354  cell envelope-related transcriptional attenuator  26.81 
 
 
490 aa  68.9  0.0000000003  Mycobacterium sp. JLS  Bacteria  normal  0.0429862  normal  0.395159 
 
 
-
 
NC_013131  Caci_2100  cell envelope-related transcriptional attenuator  24.61 
 
 
393 aa  69.3  0.0000000003  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_6386  cell envelope-related transcriptional attenuator  27.92 
 
 
382 aa  68.6  0.0000000004  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_1318  cell envelope-related transcriptional attenuator  26.81 
 
 
490 aa  68.2  0.0000000005  Mycobacterium sp. MCS  Bacteria  normal  0.940107  n/a   
 
 
-
 
NC_008705  Mkms_1335  cell envelope-related transcriptional attenuator  26.81 
 
 
490 aa  68.2  0.0000000005  Mycobacterium sp. KMS  Bacteria  normal  0.962054  normal  0.634397 
 
 
-
 
NC_013169  Ksed_25980  hypothetical protein  43.24 
 
 
264 aa  67.8  0.0000000006  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_5665  cell envelope-related transcriptional attenuator  28.79 
 
 
306 aa  67.4  0.0000000009  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.304907  normal  0.0393509 
 
 
-
 
NC_013170  Ccur_01650  cell envelope-related function transcriptional attenuator common domain protein  25.15 
 
 
512 aa  67  0.000000001  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.475151  hitchhiker  0.0000000000510123 
 
 
-
 
NC_008726  Mvan_1726  cell envelope-related transcriptional attenuator  27.37 
 
 
493 aa  67  0.000000001  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_014158  Tpau_1061  cell envelope-related transcriptional attenuator  24.84 
 
 
567 aa  66.2  0.000000002  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_16350  cell envelope-related transcriptional attenuator  29.39 
 
 
307 aa  65.5  0.000000003  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0716913  normal  0.935262 
 
 
-
 
NC_013441  Gbro_1852  cell envelope-related function transcriptional attenuator, LytR/CpsA family  25.54 
 
 
676 aa  65.1  0.000000004  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_08560  cell envelope-related function transcriptional attenuator common domain protein  25.32 
 
 
434 aa  65.5  0.000000004  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.511519  normal  0.633257 
 
 
-
 
NC_013172  Bfae_20880  cell envelope-related function transcriptional attenuator common domain  28.35 
 
 
296 aa  64.7  0.000000006  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
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