More than 300 homologs were found in PanDaTox collection
for query gene Gobs_2446 on replicon NC_013757
Organism: Geodermatophilus obscurus DSM 43160



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013757  Gobs_2446  short-chain dehydrogenase/reductase SDR  100 
 
 
246 aa  467  1.0000000000000001e-131  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.0818672  n/a   
 
 
-
 
NC_013172  Bfae_00620  dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like  69.14 
 
 
260 aa  306  2.0000000000000002e-82  Brachybacterium faecium DSM 4810  Bacteria  normal  0.297652  n/a   
 
 
-
 
NC_013131  Caci_6299  short-chain dehydrogenase/reductase SDR  66.67 
 
 
251 aa  303  2.0000000000000002e-81  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.125126  normal 
 
 
-
 
NC_013595  Sros_8214  short chain dehydrogenase  68.29 
 
 
248 aa  294  1e-78  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_4071  short-chain dehydrogenase/reductase SDR  68.03 
 
 
256 aa  288  5.0000000000000004e-77  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.254174 
 
 
-
 
NC_013131  Caci_1459  short-chain dehydrogenase/reductase SDR  67.61 
 
 
255 aa  284  7e-76  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.843425  normal  0.851299 
 
 
-
 
NC_013131  Caci_6298  short-chain dehydrogenase/reductase SDR  60.41 
 
 
271 aa  270  1e-71  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.1246  normal 
 
 
-
 
NC_014158  Tpau_0761  short-chain dehydrogenase/reductase SDR  61.89 
 
 
253 aa  258  6e-68  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.562893  n/a   
 
 
-
 
NC_009664  Krad_4194  short-chain dehydrogenase/reductase SDR  65.16 
 
 
252 aa  257  1e-67  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.870685  normal  0.0785008 
 
 
-
 
NC_013093  Amir_0395  short-chain dehydrogenase/reductase SDR  67.48 
 
 
256 aa  250  2e-65  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_0077  short-chain dehydrogenase/reductase SDR  48.37 
 
 
248 aa  187  2e-46  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_3011  short-chain dehydrogenase/reductase SDR  45.38 
 
 
251 aa  177  1e-43  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_0268  short-chain dehydrogenase/reductase SDR  41.06 
 
 
250 aa  173  1.9999999999999998e-42  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008009  Acid345_0642  short-chain dehydrogenase/reductase SDR  39.29 
 
 
252 aa  171  6.999999999999999e-42  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.220005 
 
 
-
 
NC_008697  Noca_4841  short-chain dehydrogenase/reductase SDR  44.88 
 
 
258 aa  169  3e-41  Nocardioides sp. JS614  Bacteria  normal  0.166683  normal 
 
 
-
 
NC_008752  Aave_1551  short-chain dehydrogenase/reductase SDR  44.13 
 
 
270 aa  162  4.0000000000000004e-39  Acidovorax citrulli AAC00-1  Bacteria  normal  0.2513  normal  0.363007 
 
 
-
 
NC_011661  Dtur_1771  short-chain dehydrogenase/reductase SDR  35.34 
 
 
252 aa  159  3e-38  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_0643  short-chain dehydrogenase/reductase SDR  38.96 
 
 
271 aa  157  1e-37  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.224446 
 
 
-
 
NC_010085  Nmar_0026  short-chain dehydrogenase/reductase SDR  39.43 
 
 
269 aa  155  6e-37  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal 
 
 
-
 
NC_008697  Noca_4814  short-chain dehydrogenase/reductase SDR  44.88 
 
 
257 aa  155  6e-37  Nocardioides sp. JS614  Bacteria  normal  0.19857  normal 
 
 
-
 
NC_011737  PCC7424_5536  short-chain dehydrogenase/reductase SDR  39.02 
 
 
254 aa  155  8e-37  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.0819159 
 
 
-
 
NC_013922  Nmag_2910  short-chain dehydrogenase/reductase SDR  42.39 
 
 
251 aa  154  1e-36  Natrialba magadii ATCC 43099  Archaea  normal  0.640216  n/a   
 
 
-
 
NC_013947  Snas_2729  short-chain dehydrogenase/reductase SDR  44.05 
 
 
250 aa  154  1e-36  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.189012  normal  0.165554 
 
 
-
 
NC_013739  Cwoe_2494  short-chain dehydrogenase/reductase SDR  42.97 
 
 
291 aa  153  2e-36  Conexibacter woesei DSM 14684  Bacteria  normal  0.60014  normal  0.0881916 
 
 
-
 
NC_009667  Oant_2067  short-chain dehydrogenase/reductase SDR  37.9 
 
 
246 aa  152  4e-36  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_1526  short-chain dehydrogenase/reductase SDR  43.2 
 
 
254 aa  150  1e-35  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_1486  short-chain dehydrogenase/reductase SDR  42.74 
 
 
241 aa  150  2e-35  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.727774  normal 
 
 
-
 
NC_008686  Pden_1040  short chain dehydrogenase  41.33 
 
 
253 aa  149  3e-35  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR1122  short chain dehydrogenase/reductase family oxidoreductase  38.31 
 
 
246 aa  149  4e-35  Brucella suis 1330  Bacteria  normal  0.0726405  n/a   
 
 
-
 
NC_010483  TRQ2_0608  short-chain dehydrogenase/reductase SDR  34.01 
 
 
251 aa  149  4e-35  Thermotoga sp. RQ2  Bacteria  normal  0.236394  n/a   
 
 
-
 
NC_009486  Tpet_0594  short-chain dehydrogenase/reductase SDR  34.01 
 
 
251 aa  149  4e-35  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.000000426585  n/a   
 
 
-
 
NC_009505  BOV_1080  short chain dehydrogenase/reductase family oxidoreductase  38.31 
 
 
246 aa  149  4e-35  Brucella ovis ATCC 25840  Bacteria  normal  0.38691  n/a   
 
 
-
 
NC_010511  M446_1803  short-chain dehydrogenase/reductase SDR  44 
 
 
262 aa  148  6e-35  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.225984 
 
 
-
 
NC_010172  Mext_1326  short-chain dehydrogenase/reductase SDR  42.4 
 
 
254 aa  148  7e-35  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.393683 
 
 
-
 
NC_008148  Rxyl_0541  short-chain dehydrogenase/reductase SDR  40.56 
 
 
251 aa  148  9e-35  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009484  Acry_0716  short-chain dehydrogenase/reductase SDR  42.97 
 
 
249 aa  147  2.0000000000000003e-34  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_1552  short-chain dehydrogenase/reductase SDR  40.32 
 
 
248 aa  147  2.0000000000000003e-34  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0714452  normal 
 
 
-
 
NC_009338  Mflv_4062  short chain dehydrogenase  41.04 
 
 
257 aa  147  2.0000000000000003e-34  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.171649  normal  0.787909 
 
 
-
 
NC_009720  Xaut_2759  short-chain dehydrogenase/reductase SDR  41.46 
 
 
261 aa  146  4.0000000000000006e-34  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_4018  short-chain dehydrogenase/reductase SDR  35.8 
 
 
254 aa  145  5e-34  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_0638  short-chain dehydrogenase/reductase SDR  40.91 
 
 
246 aa  145  6e-34  Serratia proteamaculans 568  Bacteria  normal  0.368584  normal 
 
 
-
 
NC_011365  Gdia_0880  short-chain dehydrogenase/reductase SDR  41.87 
 
 
250 aa  145  6e-34  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_1178  short-chain dehydrogenase/reductase SDR  43.8 
 
 
262 aa  145  8.000000000000001e-34  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6893  putative 3-oxoacyl-(acyl-carrier-protein) reductase  42.8 
 
 
266 aa  144  1e-33  Bradyrhizobium sp. BTAi1  Bacteria  hitchhiker  0.00227102  normal  0.0503904 
 
 
-
 
NC_008312  Tery_2914  short chain dehydrogenase  34 
 
 
255 aa  144  1e-33  Trichodesmium erythraeum IMS101  Bacteria  normal  0.892644  normal  0.135282 
 
 
-
 
NC_008726  Mvan_2281  short chain dehydrogenase  40.24 
 
 
257 aa  144  1e-33  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.121478 
 
 
-
 
NC_009511  Swit_3324  short-chain dehydrogenase/reductase SDR  45.24 
 
 
248 aa  144  1e-33  Sphingomonas wittichii RW1  Bacteria  normal  0.057049  hitchhiker  0.000702749 
 
 
-
 
NC_010172  Mext_1352  short-chain dehydrogenase/reductase SDR  39.92 
 
 
282 aa  144  2e-33  Methylobacterium extorquens PA1  Bacteria  normal  0.316546  normal  0.241504 
 
 
-
 
NC_008688  Pden_5052  short-chain dehydrogenase/reductase SDR  41.95 
 
 
246 aa  143  2e-33  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_008697  Noca_4826  short-chain dehydrogenase/reductase SDR  40.83 
 
 
244 aa  144  2e-33  Nocardioides sp. JS614  Bacteria  normal  normal  0.806753 
 
 
-
 
NC_011004  Rpal_0113  short-chain dehydrogenase/reductase SDR  41.77 
 
 
262 aa  144  2e-33  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.351696  n/a   
 
 
-
 
NC_009675  Anae109_2737  3-oxoacyl-(acyl-carrier-protein) reductase  41.34 
 
 
249 aa  144  2e-33  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.277769  normal 
 
 
-
 
NC_002947  PP_1953  short chain dehydrogenase/reductase family oxidoreductase  34.69 
 
 
269 aa  142  3e-33  Pseudomonas putida KT2440  Bacteria  normal  0.660502  hitchhiker  0.0000443121 
 
 
-
 
NC_011901  Tgr7_1954  short chain dehydrogenase/reductase family oxidoreductase  39.11 
 
 
250 aa  142  3e-33  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_2515  short-chain dehydrogenase/reductase SDR  39.13 
 
 
250 aa  143  3e-33  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013526  Tter_1966  short-chain dehydrogenase/reductase SDR  37.2 
 
 
254 aa  143  3e-33  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_2712  short-chain dehydrogenase/reductase SDR  43.43 
 
 
286 aa  143  3e-33  Polaromonas naphthalenivorans CJ2  Bacteria  decreased coverage  0.0000174886  normal  0.399546 
 
 
-
 
NC_013205  Aaci_1211  short-chain dehydrogenase/reductase SDR  39.59 
 
 
250 aa  143  3e-33  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.663428  n/a   
 
 
-
 
NC_013093  Amir_2079  short chain dehydrogenase  39.84 
 
 
255 aa  142  4e-33  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_1138  short-chain dehydrogenase/reductase SDR  41.43 
 
 
255 aa  142  6e-33  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_2060  short chain dehydrogenase  39.22 
 
 
257 aa  142  6e-33  Mycobacterium sp. MCS  Bacteria  normal  0.256692  n/a   
 
 
-
 
NC_008705  Mkms_2106  short chain dehydrogenase  39.22 
 
 
257 aa  142  6e-33  Mycobacterium sp. KMS  Bacteria  normal  normal  0.077628 
 
 
-
 
NC_009077  Mjls_2043  short chain dehydrogenase  39.22 
 
 
257 aa  142  6e-33  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_1601  short-chain dehydrogenase/reductase SDR  40 
 
 
258 aa  142  7e-33  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_6823  short-chain dehydrogenase/reductase SDR  35.6 
 
 
258 aa  142  7e-33  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010465  YPK_2510  short-chain dehydrogenase/reductase SDR  37.5 
 
 
246 aa  141  8e-33  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_4257  Short-chain dehydrogenase/reductase SDR  42 
 
 
262 aa  141  8e-33  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0797349  normal 
 
 
-
 
NC_013947  Snas_5056  short-chain dehydrogenase/reductase SDR  40.32 
 
 
249 aa  141  8e-33  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_4158  short-chain dehydrogenase/reductase SDR  40.8 
 
 
262 aa  141  8e-33  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.526951  normal 
 
 
-
 
NC_010159  YpAngola_A1699  oxidoreductase, short chain dehydrogenase/reductase family protein  37.5 
 
 
246 aa  141  8e-33  Yersinia pestis Angola  Bacteria  normal  normal  0.0105879 
 
 
-
 
NC_009708  YpsIP31758_2412  oxidoreductase, short chain dehydrogenase/reductase family protein  37.5 
 
 
246 aa  141  8e-33  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_4104  short-chain dehydrogenase/reductase SDR  41.27 
 
 
255 aa  141  8e-33  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.90531 
 
 
-
 
NC_011004  Rpal_0721  2-hydroxycyclohexanecarboxyl-CoA dehydrogenase  38.52 
 
 
255 aa  141  9e-33  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_0963  short-chain dehydrogenase/reductase SDR  41.13 
 
 
258 aa  140  9.999999999999999e-33  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_1020  3-oxoacyl-(acyl-carrier-protein) reductase  35.89 
 
 
246 aa  141  9.999999999999999e-33  Thermotoga petrophila RKU-1  Bacteria  normal  0.0122832  n/a   
 
 
-
 
NC_013743  Htur_0514  short-chain dehydrogenase/reductase SDR  39.75 
 
 
252 aa  141  9.999999999999999e-33  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_007488  RSP_4004  Short-chain dehydrogenase/reductase SDR  46.25 
 
 
259 aa  140  9.999999999999999e-33  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.132038  n/a   
 
 
-
 
NC_008786  Veis_3594  short-chain dehydrogenase/reductase SDR  39.13 
 
 
261 aa  141  9.999999999999999e-33  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.806821  normal  0.214566 
 
 
-
 
NC_009717  Xaut_4869  short-chain dehydrogenase/reductase SDR  42.75 
 
 
249 aa  140  1.9999999999999998e-32  Xanthobacter autotrophicus Py2  Bacteria  normal  0.506283  normal  0.100596 
 
 
-
 
NC_010483  TRQ2_1110  3-oxoacyl-(acyl-carrier-protein) reductase  35.89 
 
 
246 aa  140  1.9999999999999998e-32  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_011892  Mnod_8333  short-chain dehydrogenase/reductase SDR  38.4 
 
 
257 aa  140  1.9999999999999998e-32  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.319832  n/a   
 
 
-
 
NC_010338  Caul_1544  short-chain dehydrogenase/reductase SDR  40.57 
 
 
244 aa  139  3e-32  Caulobacter sp. K31  Bacteria  normal  normal  0.846723 
 
 
-
 
NC_011831  Cagg_1587  short-chain dehydrogenase/reductase SDR  41.83 
 
 
256 aa  139  3e-32  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1758  hypothetical protein  37.8 
 
 
254 aa  140  3e-32  Streptosporangium roseum DSM 43021  Bacteria  normal  0.522329  normal  0.0728091 
 
 
-
 
NC_007760  Adeh_2748  3-oxoacyl-[acyl-carrier-protein] reductase  41.27 
 
 
250 aa  139  3.9999999999999997e-32  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_008043  TM1040_3393  short-chain dehydrogenase/reductase SDR  37.82 
 
 
252 aa  139  3.9999999999999997e-32  Ruegeria sp. TM1040  Bacteria  normal  normal  0.407663 
 
 
-
 
NC_008686  Pden_1255  3-ketoacyl-(acyl-carrier-protein) reductase  39.11 
 
 
247 aa  139  3.9999999999999997e-32  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_013457  VEA_000395  3-oxoacyl-[acyl-carrier protein] reductase  40.74 
 
 
252 aa  139  3.9999999999999997e-32  Vibrio sp. Ex25  Bacteria  normal  0.36672  n/a   
 
 
-
 
NC_009485  BBta_6964  putative 3-oxoacyl-(acyl-carrier-protein) reductase  42.11 
 
 
259 aa  139  3.9999999999999997e-32  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.175664  normal 
 
 
-
 
NC_009632  SaurJH1_2549  short chain dehydrogenase  36.47 
 
 
272 aa  139  4.999999999999999e-32  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_2700  short-chain dehydrogenase/reductase SDR  41.3 
 
 
268 aa  139  4.999999999999999e-32  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.657901 
 
 
-
 
NC_009487  SaurJH9_2499  short chain dehydrogenase  36.47 
 
 
272 aa  139  4.999999999999999e-32  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.496805  n/a   
 
 
-
 
NC_010320  Teth514_1723  3-oxoacyl-(acyl-carrier-protein) reductase  34.84 
 
 
247 aa  139  4.999999999999999e-32  Thermoanaerobacter sp. X514  Bacteria  unclonable  0.000000000657249  n/a   
 
 
-
 
NC_011772  BCG9842_B1783  glucose 1-dehydrogenase  35.92 
 
 
247 aa  138  7e-32  Bacillus cereus G9842  Bacteria  normal  0.88349  normal 
 
 
-
 
NC_008392  Bamb_6220  short-chain dehydrogenase/reductase SDR  36.43 
 
 
252 aa  138  7e-32  Burkholderia ambifaria AMMD  Bacteria  normal  0.621886  normal 
 
 
-
 
NC_008048  Sala_1896  3-oxoacyl-(acyl-carrier-protein) reductase  39.68 
 
 
247 aa  138  7.999999999999999e-32  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal  0.176277 
 
 
-
 
NC_011145  AnaeK_2840  3-oxoacyl-(acyl-carrier-protein) reductase  40.48 
 
 
250 aa  138  8.999999999999999e-32  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_2932  3-oxoacyl-(acyl-carrier-protein) reductase  40.48 
 
 
250 aa  138  8.999999999999999e-32  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_008578  Acel_1849  short chain dehydrogenase  38.15 
 
 
255 aa  138  8.999999999999999e-32  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.838313 
 
 
-
 
NC_009616  Tmel_1835  3-oxoacyl-(acyl-carrier-protein) reductase  34.55 
 
 
244 aa  137  1e-31  Thermosipho melanesiensis BI429  Bacteria  normal  0.686329  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>