More than 300 homologs were found in PanDaTox collection
for query gene Gmet_3220 on replicon NC_007517
Organism: Geobacter metallireducens GS-15



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007517  Gmet_3220  response regulator receiver domain-containing protein  100 
 
 
233 aa  467  1.0000000000000001e-131  Geobacter metallireducens GS-15  Bacteria  normal  0.975965  hitchhiker  0.00188513 
 
 
-
 
NC_002939  GSU3263  response regulator  50.88 
 
 
231 aa  245  4e-64  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3986  response regulator receiver modulated PilZ sensor protein  42.55 
 
 
236 aa  204  9e-52  Geobacter uraniireducens Rf4  Bacteria  normal  0.694656  n/a   
 
 
-
 
NC_002939  GSU0877  response regulator  40.43 
 
 
248 aa  197  2.0000000000000003e-49  Geobacter sulfurreducens PCA  Bacteria  normal  0.200847  n/a   
 
 
-
 
NC_011146  Gbem_2803  response regulator receiver modulated PilZ sensor protein  42.86 
 
 
237 aa  191  7e-48  Geobacter bemidjiensis Bem  Bacteria  normal  0.0586673  n/a   
 
 
-
 
NC_012918  GM21_1407  response regulator receiver modulated PilZ sensor protein  42.86 
 
 
237 aa  191  9e-48  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000000138709 
 
 
-
 
NC_012918  GM21_0722  response regulator receiver modulated PilZ sensor protein  42.74 
 
 
240 aa  184  1.0000000000000001e-45  Geobacter sp. M21  Bacteria  n/a    hitchhiker  4.84817e-16 
 
 
-
 
NC_009483  Gura_0926  response regulator receiver modulated PilZ sensor protein  41.63 
 
 
233 aa  184  1.0000000000000001e-45  Geobacter uraniireducens Rf4  Bacteria  normal  0.76006  n/a   
 
 
-
 
NC_011146  Gbem_0710  response regulator receiver modulated PilZ sensor protein  41.88 
 
 
240 aa  182  3e-45  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_0075  response regulator receiver modulated PilZ sensor protein  33.93 
 
 
227 aa  157  2e-37  Geobacter bemidjiensis Bem  Bacteria  normal  0.124346  n/a   
 
 
-
 
NC_012918  GM21_0058  response regulator receiver modulated PilZ sensor protein  34.96 
 
 
226 aa  153  2e-36  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00000000000000220235 
 
 
-
 
NC_007498  Pcar_1964  response regulator CheY  26.11 
 
 
244 aa  101  9e-21  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0118313  n/a   
 
 
-
 
NC_007498  Pcar_0040  response regulator  28.57 
 
 
239 aa  100  2e-20  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.0000155004  n/a   
 
 
-
 
NC_009943  Dole_1090  response regulator receiver protein  31.4 
 
 
846 aa  95.1  8e-19  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.874134  n/a   
 
 
-
 
NC_009668  Oant_3678  response regulator receiver protein  36.97 
 
 
123 aa  88.6  9e-17  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.716343  n/a   
 
 
-
 
NC_009636  Smed_0925  response regulator receiver protein  34.45 
 
 
123 aa  87.8  1e-16  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_1749  two component response regulator  34.45 
 
 
123 aa  87.8  1e-16  Agrobacterium vitis S4  Bacteria  normal  0.417168  n/a   
 
 
-
 
NC_013216  Dtox_1077  two component transcriptional regulator, winged helix family  38.74 
 
 
235 aa  86.7  3e-16  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_007955  Mbur_0825  response regulator receiver  36.43 
 
 
204 aa  86.7  3e-16  Methanococcoides burtonii DSM 6242  Archaea  normal  0.751719  n/a   
 
 
-
 
NC_010172  Mext_0966  response regulator receiver  35.04 
 
 
126 aa  86.3  4e-16  Methylobacterium extorquens PA1  Bacteria  normal  0.734958  normal  0.0218415 
 
 
-
 
NC_010725  Mpop_0906  response regulator receiver protein  35.04 
 
 
126 aa  86.3  4e-16  Methylobacterium populi BJ001  Bacteria  normal  0.0687715  normal  0.223091 
 
 
-
 
NC_011894  Mnod_7418  response regulator receiver protein  34.19 
 
 
126 aa  85.9  5e-16  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.149776  n/a   
 
 
-
 
NC_012850  Rleg_1381  response regulator receiver protein  33.61 
 
 
123 aa  85.5  6e-16  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.427616 
 
 
-
 
NC_011369  Rleg2_1289  response regulator receiver protein  33.61 
 
 
123 aa  85.5  6e-16  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.0254052  hitchhiker  0.00394342 
 
 
-
 
NC_011004  Rpal_3542  response regulator receiver protein  35.9 
 
 
121 aa  85.1  8e-16  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_004311  BRA0612  polar differentiation response regulator  35.9 
 
 
123 aa  85.1  9e-16  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_3309  response regulator receiver domain-containing protein  35.9 
 
 
121 aa  85.1  9e-16  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.0791773  normal 
 
 
-
 
NC_011757  Mchl_0930  response regulator receiver protein  34.19 
 
 
126 aa  84.7  0.000000000000001  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.41216  normal  0.177566 
 
 
-
 
NC_009719  Plav_2814  response regulator receiver protein  37.07 
 
 
124 aa  84.7  0.000000000000001  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.212392  normal  0.180632 
 
 
-
 
NC_010511  M446_6680  response regulator receiver protein  34.19 
 
 
126 aa  84.3  0.000000000000001  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_009504  BOV_A0576  polar differentiation response regulator  35.9 
 
 
134 aa  84.7  0.000000000000001  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_1805  response regulator receiver modulated diguanylate cyclase  31.5 
 
 
310 aa  84.3  0.000000000000001  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.0638722  n/a   
 
 
-
 
NC_013385  Adeg_1011  two component transcriptional regulator, winged helix family  39.09 
 
 
231 aa  84  0.000000000000002  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_2412  response regulator receiver domain-containing protein  35.04 
 
 
121 aa  84.3  0.000000000000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.148654 
 
 
-
 
NC_008044  TM1040_0342  multi-sensor hybrid histidine kinase  36.04 
 
 
827 aa  84.3  0.000000000000002  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_0399  two component transcriptional regulator  38.74 
 
 
272 aa  83.2  0.000000000000003  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.802217  normal 
 
 
-
 
NC_007406  Nwi_1431  response regulator receiver  35.9 
 
 
121 aa  83.2  0.000000000000003  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_2443  response regulator receiver domain-containing protein  35.9 
 
 
121 aa  83.2  0.000000000000003  Nitrobacter hamburgensis X14  Bacteria  normal  0.377248  n/a   
 
 
-
 
NC_008254  Meso_1347  response regulator receiver protein  33.61 
 
 
123 aa  83.2  0.000000000000003  Chelativorans sp. BNC1  Bacteria  normal  0.57835  n/a   
 
 
-
 
NC_009485  BBta_4747  putative response regulator in two-component regulatory system (CheY-like protein)  35.9 
 
 
121 aa  83.6  0.000000000000003  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0229347  normal  0.575549 
 
 
-
 
NC_009483  Gura_1496  multi-sensor signal transduction histidine kinase  37.72 
 
 
679 aa  83.2  0.000000000000003  Geobacter uraniireducens Rf4  Bacteria  normal  0.381542  n/a   
 
 
-
 
NC_008463  PA14_05390  ChpA  35.83 
 
 
2476 aa  83.2  0.000000000000003  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.812783  normal 
 
 
-
 
NC_009656  PSPA7_0513  response regulator  35.83 
 
 
2458 aa  82.8  0.000000000000004  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_0979  sensor histidine kinase  31.62 
 
 
1574 aa  83.2  0.000000000000004  Psychromonas ingrahamii 37  Bacteria  normal  hitchhiker  0.00449169 
 
 
-
 
NC_010338  Caul_1496  response regulator receiver protein  37.07 
 
 
127 aa  83.2  0.000000000000004  Caulobacter sp. K31  Bacteria  normal  normal  0.270703 
 
 
-
 
NC_011899  Hore_13280  two component transcriptional regulator, winged helix family  32.64 
 
 
227 aa  82.4  0.000000000000005  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.0000000536961  n/a   
 
 
-
 
NC_009720  Xaut_3859  response regulator receiver protein  34.48 
 
 
124 aa  82.4  0.000000000000005  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A3206  response regulator receiver protein  33.33 
 
 
126 aa  82.4  0.000000000000005  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.901142  n/a   
 
 
-
 
NC_007958  RPD_3039  response regulator receiver  35.04 
 
 
121 aa  82.4  0.000000000000005  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.403093  normal  0.253409 
 
 
-
 
NC_010581  Bind_1212  response regulator receiver protein  32.2 
 
 
123 aa  82.4  0.000000000000005  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_010718  Nther_0251  response regulator receiver protein  29.37 
 
 
126 aa  82.4  0.000000000000006  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal  0.102048 
 
 
-
 
NC_010320  Teth514_1997  two component transcriptional regulator  36.36 
 
 
234 aa  81.6  0.000000000000008  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.000000742772  n/a   
 
 
-
 
NC_013526  Tter_2709  response regulator receiver protein  39.02 
 
 
129 aa  81.6  0.00000000000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  hitchhiker  0.000000000626377  n/a   
 
 
-
 
NC_007413  Ava_1777  metal dependent phosphohydrolase, HD region with response regulator receiver modulation  34.43 
 
 
414 aa  81.3  0.00000000000001  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_009654  Mmwyl1_0962  response regulator receiver protein  43.12 
 
 
304 aa  80.9  0.00000000000001  Marinomonas sp. MWYL1  Bacteria  normal  0.512477  normal 
 
 
-
 
NC_011831  Cagg_2709  two component transcriptional regulator, winged helix family  31.14 
 
 
236 aa  80.5  0.00000000000002  Chloroflexus aggregans DSM 9485  Bacteria  decreased coverage  0.0011921  normal 
 
 
-
 
NC_007760  Adeh_0606  response regulator receiver domain-containing protein  38.6 
 
 
123 aa  80.9  0.00000000000002  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_1865  response regulator receiver protein  33.33 
 
 
123 aa  80.9  0.00000000000002  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.111325  normal  0.212824 
 
 
-
 
NC_013216  Dtox_1955  two component transcriptional regulator, winged helix family  38.74 
 
 
236 aa  80.5  0.00000000000002  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.295041  normal 
 
 
-
 
NC_008347  Mmar10_1276  response regulator receiver protein  33.61 
 
 
144 aa  80.9  0.00000000000002  Maricaulis maris MCS10  Bacteria  normal  0.107336  normal  0.0271474 
 
 
-
 
NC_007355  Mbar_A3109  response regulator receiver  37.27 
 
 
285 aa  80.1  0.00000000000003  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.0893452  normal  0.677049 
 
 
-
 
NC_007498  Pcar_2329  sensor histidine kinase/GAF domain-containing protein  38.18 
 
 
760 aa  80.1  0.00000000000003  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.412678  n/a   
 
 
-
 
NC_011145  AnaeK_0640  response regulator receiver protein  38.6 
 
 
123 aa  79.7  0.00000000000003  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_0707  two component transcriptional regulator  40.35 
 
 
227 aa  79.7  0.00000000000003  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.598521  normal 
 
 
-
 
NC_007498  Pcar_1411  FOG: CheY-like receiver  36.89 
 
 
131 aa  79.3  0.00000000000004  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  6.19514e-17  n/a   
 
 
-
 
NC_011883  Ddes_0567  two component transcriptional regulator, winged helix family  37.59 
 
 
225 aa  79.7  0.00000000000004  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.463355  n/a   
 
 
-
 
NC_007760  Adeh_4009  two component transcriptional regulator  40 
 
 
230 aa  79.3  0.00000000000004  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  decreased coverage  0.00751412  n/a   
 
 
-
 
NC_011891  A2cp1_0631  response regulator receiver protein  38.6 
 
 
123 aa  79.7  0.00000000000004  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_3794  response regulator receiver sensor signal transduction histidine kinase  36.29 
 
 
376 aa  79.3  0.00000000000005  Opitutus terrae PB90-1  Bacteria  normal  0.0277983  normal  0.543799 
 
 
-
 
NC_011891  A2cp1_4151  two component transcriptional regulator, winged helix family  40 
 
 
230 aa  79.3  0.00000000000005  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_4125  two component transcriptional regulator, winged helix family  40 
 
 
230 aa  79.3  0.00000000000005  Anaeromyxobacter sp. K  Bacteria  normal  0.125271  n/a   
 
 
-
 
NC_011666  Msil_0423  response regulator receiver protein  31.93 
 
 
123 aa  79.3  0.00000000000005  Methylocella silvestris BL2  Bacteria  n/a    normal  0.89687 
 
 
-
 
NC_013552  DhcVS_137  DNA-binding response regulator  33.06 
 
 
123 aa  79  0.00000000000006  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_0249  two component transcriptional regulator, winged helix family  39.47 
 
 
232 aa  79  0.00000000000006  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_3164  multi-sensor hybrid histidine kinase  33.06 
 
 
1245 aa  79  0.00000000000006  Magnetococcus sp. MC-1  Bacteria  normal  0.26571  hitchhiker  0.00125378 
 
 
-
 
NC_009012  Cthe_0287  GAF sensor hybrid histidine kinase  35.24 
 
 
1160 aa  79  0.00000000000006  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_4431  response regulator receiver domain-containing protein  31.93 
 
 
125 aa  78.6  0.00000000000008  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_1097  response regulator receiver protein  34.96 
 
 
131 aa  78.6  0.00000000000009  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.00801176  n/a   
 
 
-
 
NC_009455  DehaBAV1_0241  response regulator receiver protein  35.25 
 
 
123 aa  78.6  0.00000000000009  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_0415  two component transcriptional regulator  39.09 
 
 
231 aa  78.2  0.00000000000009  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.777838 
 
 
-
 
NC_012880  Dd703_3124  multi-sensor hybrid histidine kinase  35.16 
 
 
1374 aa  77.8  0.0000000000001  Dickeya dadantii Ech703  Bacteria  normal  0.957955  n/a   
 
 
-
 
NC_011726  PCC8801_1580  two component transcriptional regulator, LuxR family  37.04 
 
 
216 aa  78.2  0.0000000000001  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_1605  two component transcriptional regulator, LuxR family  37.04 
 
 
216 aa  78.2  0.0000000000001  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_3271  response regulator receiver protein  34.19 
 
 
120 aa  78.2  0.0000000000001  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_0829  multi-sensor hybrid histidine kinase  30.58 
 
 
1240 aa  78.2  0.0000000000001  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008262  CPR_0609  DNA-binding response regulator  31.79 
 
 
231 aa  77.8  0.0000000000001  Clostridium perfringens SM101  Bacteria  hitchhiker  0.0000282114  n/a   
 
 
-
 
NC_009767  Rcas_3604  putative PAS/PAC sensor protein  39.09 
 
 
619 aa  77  0.0000000000002  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.562878 
 
 
-
 
NC_012918  GM21_0758  response regulator receiver protein  35.65 
 
 
132 aa  77.4  0.0000000000002  Geobacter sp. M21  Bacteria  n/a    normal  0.0540632 
 
 
-
 
NC_007005  Psyr_1099  response regulator receiver  33.03 
 
 
129 aa  77  0.0000000000002  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_0508  response regulator receiver domain-containing protein  35.9 
 
 
121 aa  77.4  0.0000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  0.481314  normal 
 
 
-
 
NC_007484  Noc_0131  response regulator receiver  34.23 
 
 
132 aa  77.4  0.0000000000002  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_007512  Plut_0305  PAS/PAC sensor hybrid histidine kinase  34.38 
 
 
967 aa  77.4  0.0000000000002  Chlorobium luteolum DSM 273  Bacteria  normal  unclonable  0.00000133293 
 
 
-
 
NC_012793  GWCH70_1924  two component transcriptional regulator, winged helix family  32.43 
 
 
225 aa  77.8  0.0000000000002  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_1062  response regulator receiver protein  35.04 
 
 
120 aa  77.4  0.0000000000002  Cyanothece sp. PCC 7425  Bacteria  normal  0.58489  hitchhiker  0.0000344775 
 
 
-
 
NC_009675  Anae109_0467  response regulator receiver protein  36.11 
 
 
124 aa  77.4  0.0000000000002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.117091  normal  0.827791 
 
 
-
 
NC_011146  Gbem_0743  response regulator receiver protein  35.65 
 
 
132 aa  77  0.0000000000002  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_0623  DNA-binding response regulator  31.79 
 
 
231 aa  77.4  0.0000000000002  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000212568  n/a   
 
 
-
 
NC_010338  Caul_4546  two component transcriptional regulator  38.46 
 
 
230 aa  77.4  0.0000000000002  Caulobacter sp. K31  Bacteria  normal  normal  0.281853 
 
 
-
 
NC_008340  Mlg_0355  response regulator receiver protein  32.77 
 
 
161 aa  77  0.0000000000002  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.384709  normal  0.97064 
 
 
-
 
NC_008347  Mmar10_1277  response regulator receiver modulated diguanylate cyclase  38.46 
 
 
454 aa  77  0.0000000000002  Maricaulis maris MCS10  Bacteria  normal  0.410696  normal  0.0388481 
 
 
-
 
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