95 homologs were found in PanDaTox collection
for query gene Gbem_3856 on replicon NC_011146
Organism: Geobacter bemidjiensis Bem



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011146  Gbem_3856  triphosphoribosyl-dephospho-CoA protein  100 
 
 
272 aa  544  1e-154  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_3941  Triphosphoribosyl-dephospho-CoA synthase  93.75 
 
 
272 aa  481  1e-135  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.000239715 
 
 
-
 
NC_012918  GM21_0172  triphosphoribosyl-dephospho-CoA protein  60.37 
 
 
267 aa  306  2.0000000000000002e-82  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00000000510729 
 
 
-
 
NC_011146  Gbem_0190  triphosphoribosyl-dephospho-CoA protein  60 
 
 
267 aa  303  2.0000000000000002e-81  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU0806  ATP:dephospho-CoA triphosphoribosyl transferase  49.6 
 
 
273 aa  226  4e-58  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_0451  triphosphoribosyl-dephospho-CoA protein  49.4 
 
 
339 aa  219  3.9999999999999997e-56  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0320145  n/a   
 
 
-
 
NC_013421  Pecwa_2030  triphosphoribosyl-dephospho-CoA synthase CitG  34.18 
 
 
301 aa  123  3e-27  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1757  triphosphoribosyl-dephospho-CoA synthase CitG  34.56 
 
 
301 aa  122  5e-27  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_2317  triphosphoribosyl-dephospho-CoA synthase CitG  33.82 
 
 
302 aa  108  7.000000000000001e-23  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2215  triphosphoribosyl-dephospho-CoA synthase CitG  32.82 
 
 
297 aa  101  1e-20  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_3156  triphosphoribosyl-dephospho-CoA synthase MdcB  35.23 
 
 
287 aa  101  1e-20  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011071  Smal_1076  triphosphoribosyl-dephospho-CoA synthase MdcB  36.14 
 
 
285 aa  100  3e-20  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal 
 
 
-
 
NC_008709  Ping_3658  triphosphoribosyl-dephospho-CoA synthase  33.99 
 
 
292 aa  100  3e-20  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_009457  VC0395_A0328  triphosphoribosyl-dephospho-CoA synthase CitG  32.51 
 
 
286 aa  100  3e-20  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_012560  Avin_10290  triphosphoribosyl-dephospho-CoA synthase  36.15 
 
 
292 aa  100  3e-20  Azotobacter vinelandii DJ  Bacteria  hitchhiker  0.00426102  n/a   
 
 
-
 
NC_010524  Lcho_0074  triphosphoribosyl-dephospho-CoA synthase MdcB  33.6 
 
 
295 aa  99.4  6e-20  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009832  Spro_3166  triphosphoribosyl-dephospho-CoA synthase  32.32 
 
 
294 aa  98.6  1e-19  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_2882  triphosphoribosyl-dephospho-CoA synthase  35.2 
 
 
312 aa  97.4  2e-19  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_4015  triphosphoribosyl-dephospho-CoA protein  31.6 
 
 
297 aa  97.4  2e-19  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_010084  Bmul_2045  triphosphoribosyl-dephospho-CoA synthase MdcB  33.21 
 
 
289 aa  96.3  5e-19  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_2405  triphosphoribosyl-dephospho-CoA synthase  32.22 
 
 
302 aa  95.9  7e-19  Rhodoferax ferrireducens T118  Bacteria  normal  0.146985  n/a   
 
 
-
 
NC_010002  Daci_1763  triphosphoribosyl-dephospho-CoA synthase  32.32 
 
 
286 aa  95.1  1e-18  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0029  triphosphoribosyl-dephospho-CoA synthase MdcB  36.55 
 
 
286 aa  94  2e-18  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B4926  triphosphoribosyl-dephospho-CoA synthase  34.57 
 
 
314 aa  94.4  2e-18  Ralstonia eutropha JMP134  Bacteria  normal  0.82021  n/a   
 
 
-
 
NC_011083  SeHA_C0067  triphosphoribosyl-dephospho-CoA synthase CitG  31.87 
 
 
302 aa  93.6  3e-18  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A0068  triphosphoribosyl-dephospho-CoA synthase CitG  31.87 
 
 
302 aa  93.6  3e-18  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A0069  triphosphoribosyl-dephospho-CoA synthase CitG  31.87 
 
 
302 aa  93.6  3e-18  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.749123  normal 
 
 
-
 
NC_011205  SeD_A0068  triphosphoribosyl-dephospho-CoA synthase CitG  31.87 
 
 
302 aa  93.6  3e-18  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal  0.499675 
 
 
-
 
NC_007925  RPC_4592  triphosphoribosyl-dephospho-CoA synthase  35.48 
 
 
315 aa  93.2  4e-18  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B0070  triphosphoribosyl-dephospho-CoA synthase CitG  31.5 
 
 
302 aa  93.2  5e-18  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_0030  triphosphoribosyl-dephospho-CoA synthase MdcB  36.99 
 
 
286 aa  92.8  5e-18  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0747254  normal 
 
 
-
 
NC_009436  Ent638_3370  triphosphoribosyl-dephospho-CoA synthase  31.62 
 
 
281 aa  91.7  1e-17  Enterobacter sp. 638  Bacteria  normal  normal  0.0900334 
 
 
-
 
NC_010658  SbBS512_E0527  triphosphoribosyl-dephospho-CoA synthase  31.32 
 
 
292 aa  90.5  2e-17  Shigella boydii CDC 3083-94  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A4417  triphosphoribosyl-dephospho-CoA synthase  32.56 
 
 
288 aa  90.9  2e-17  Burkholderia sp. 383  Bacteria  normal  0.234265  normal 
 
 
-
 
NC_011899  Hore_04700  Triphosphoribosyl-dephospho-CoA synthase  30.74 
 
 
467 aa  90.1  3e-17  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_00570  hypothetical protein  31.32 
 
 
292 aa  89.7  4e-17  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3012  triphosphoribosyl-dephospho-CoA synthase CitG  31.32 
 
 
292 aa  89.7  4e-17  Escherichia coli DH1  Bacteria  normal  0.139818  n/a   
 
 
-
 
NC_010468  EcolC_3031  triphosphoribosyl-dephospho-CoA synthase  31.32 
 
 
292 aa  89.7  4e-17  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A0664  triphosphoribosyl-dephospho-CoA synthase  31.32 
 
 
292 aa  89.7  4e-17  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_00581  triphosphoribosyl-dephospho-CoA transferase  31.32 
 
 
292 aa  89.7  4e-17  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A0789  triphosphoribosyl-dephospho-CoA synthase  37.4 
 
 
286 aa  89.7  4e-17  Methylibium petroleiphilum PM1  Bacteria  hitchhiker  0.000225089  normal 
 
 
-
 
NC_009801  EcE24377A_0635  triphosphoribosyl-dephospho-CoA synthase  31.32 
 
 
292 aa  89.7  5e-17  Escherichia coli E24377A  Bacteria  normal  0.474806  n/a   
 
 
-
 
NC_009074  BURPS668_1457  triphosphoribosyl-dephospho-CoA synthase MdcB  33.21 
 
 
452 aa  88.6  9e-17  Burkholderia pseudomallei 668  Bacteria  normal  0.0818949  n/a   
 
 
-
 
NC_011666  Msil_3187  triphosphoribosyl-dephospho-CoA synthase MdcB  33.73 
 
 
309 aa  88.2  1e-16  Methylocella silvestris BL2  Bacteria  n/a    normal  0.632507 
 
 
-
 
NC_011353  ECH74115_0701  triphosphoribosyl-dephospho-CoA synthase  31.32 
 
 
290 aa  88.6  1e-16  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_02560  triphosphoribosyl-dephospho-CoA synthase  33.58 
 
 
293 aa  87.4  2e-16  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0205763  normal 
 
 
-
 
NC_008542  Bcen2424_1274  triphosphoribosyl-dephospho-CoA synthase  32.95 
 
 
288 aa  87.8  2e-16  Burkholderia cenocepacia HI2424  Bacteria  normal  0.0492146  n/a   
 
 
-
 
NC_008060  Bcen_0793  triphosphoribosyl-dephospho-CoA synthase  32.95 
 
 
288 aa  87.8  2e-16  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.501312  n/a   
 
 
-
 
NC_010498  EcSMS35_0632  triphosphoribosyl-dephospho-CoA synthase  30.94 
 
 
292 aa  87.8  2e-16  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_008390  Bamb_1152  triphosphoribosyl-dephospho-CoA synthase  34.38 
 
 
288 aa  87.8  2e-16  Burkholderia ambifaria AMMD  Bacteria  normal  0.536064  n/a   
 
 
-
 
NC_009511  Swit_4291  triphosphoribosyl-dephospho-CoA synthase  34.96 
 
 
278 aa  87.4  2e-16  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_010508  Bcenmc03_1246  triphosphoribosyl-dephospho-CoA synthase MdcB  33.46 
 
 
288 aa  87  3e-16  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.0788656 
 
 
-
 
NC_011205  SeD_A0719  triphosphoribosyl-dephospho-CoA synthase  33.58 
 
 
297 aa  86.7  4e-16  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.647877  normal 
 
 
-
 
NC_007908  Rfer_1848  triphosphoribosyl-dephospho-CoA synthase  31.18 
 
 
318 aa  85.5  9e-16  Rhodoferax ferrireducens T118  Bacteria  normal  0.351206  n/a   
 
 
-
 
NC_008786  Veis_2891  triphosphoribosyl-dephospho-CoA synthase  31.79 
 
 
334 aa  85.1  0.000000000000001  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0666841  normal  0.0740235 
 
 
-
 
NC_011094  SeSA_A0778  triphosphoribosyl-dephospho-CoA synthase  33.09 
 
 
297 aa  85.1  0.000000000000001  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.843042  normal  0.796929 
 
 
-
 
NC_010322  PputGB1_2439  triphosphoribosyl-dephospho-CoA synthase  33.86 
 
 
301 aa  84.3  0.000000000000002  Pseudomonas putida GB-1  Bacteria  normal  0.045617  normal 
 
 
-
 
NC_007952  Bxe_B1845  triphosphoribosyl-dephospho-CoA synthase  33.59 
 
 
300 aa  84  0.000000000000002  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.0473593 
 
 
-
 
NC_012792  Vapar_5369  Triphosphoribosyl-dephospho-CoA synthase  33.84 
 
 
287 aa  84.3  0.000000000000002  Variovorax paradoxus S110  Bacteria  normal  0.193045  n/a   
 
 
-
 
NC_010551  BamMC406_1164  triphosphoribosyl-dephospho-CoA synthase MdcB  33.33 
 
 
288 aa  83.6  0.000000000000003  Burkholderia ambifaria MC40-6  Bacteria  normal  0.198403  normal  0.179509 
 
 
-
 
NC_006348  BMA3032  triphosphoribosyl-dephospho-CoA synthase  34.62 
 
 
356 aa  83.2  0.000000000000004  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_0544  triphosphoribosyl-dephospho-CoA synthase MdcB  34.62 
 
 
356 aa  83.2  0.000000000000004  Burkholderia mallei NCTC 10247  Bacteria  normal  0.687698  n/a   
 
 
-
 
NC_010676  Bphyt_4820  triphosphoribosyl-dephospho-CoA synthase  33.59 
 
 
307 aa  82.8  0.000000000000006  Burkholderia phytofirmans PsJN  Bacteria  normal  0.0479004  normal  0.0163783 
 
 
-
 
NC_007005  Psyr_0443  triphosphoribosyl-dephospho-CoA synthase  32.8 
 
 
291 aa  82.8  0.000000000000006  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_0293  triphosphoribosyl-dephospho-CoA synthase  34.29 
 
 
293 aa  82.4  0.000000000000007  Pseudomonas aeruginosa PA7  Bacteria  normal  0.417783  n/a   
 
 
-
 
NC_008836  BMA10229_A0609  triphosphoribosyl-dephospho-CoA synthase  34.62 
 
 
705 aa  82.4  0.000000000000007  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1261  triphosphoribosyl-dephospho-CoA synthase  34.62 
 
 
714 aa  82  0.000000000000009  Burkholderia mallei SAVP1  Bacteria  normal  0.111669  n/a   
 
 
-
 
NC_010725  Mpop_0051  triphosphoribosyl-dephospho-CoA synthase MdcB  35.37 
 
 
286 aa  81.6  0.00000000000001  Methylobacterium populi BJ001  Bacteria  normal  0.32958  normal  0.107341 
 
 
-
 
NC_007434  BURPS1710b_1589  triphosphoribosyl-dephospho-CoA synthase  34.23 
 
 
426 aa  82  0.00000000000001  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_1487  triphosphoribosyl-dephospho-CoA synthase  34.23 
 
 
431 aa  82  0.00000000000001  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_010623  Bphy_5086  triphosphoribosyl-dephospho-CoA synthase  30.32 
 
 
316 aa  81.6  0.00000000000001  Burkholderia phymatum STM815  Bacteria  normal  0.242748  normal  0.0919375 
 
 
-
 
NC_004578  PSPTO_5086  2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme- A synthase  32.27 
 
 
291 aa  80.5  0.00000000000003  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B0659  triphosphoribosyl-dephospho-CoA synthase  33.21 
 
 
297 aa  80.5  0.00000000000003  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011083  SeHA_C0732  triphosphoribosyl-dephospho-CoA synthase  33.21 
 
 
297 aa  80.5  0.00000000000003  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011080  SNSL254_A0673  triphosphoribosyl-dephospho-CoA synthase  33.21 
 
 
298 aa  80.5  0.00000000000003  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4940  triphosphoribosyl-dephospho-CoA synthase  34.38 
 
 
309 aa  79.3  0.00000000000006  Ralstonia pickettii 12J  Bacteria  normal  normal  0.0941184 
 
 
-
 
NC_012857  Rpic12D_3864  triphosphoribosyl-dephospho-CoA synthase  34.38 
 
 
309 aa  79.3  0.00000000000006  Ralstonia pickettii 12D  Bacteria  normal  0.516158  normal 
 
 
-
 
NC_010505  Mrad2831_0351  triphosphoribosyl-dephospho-CoA synthase MdcB  34.63 
 
 
322 aa  78.6  0.0000000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0398737  normal 
 
 
-
 
NC_010511  M446_6852  triphosphoribosyl-dephospho-CoA synthase MdcB  34.43 
 
 
285 aa  76.3  0.0000000000005  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_1246  triphosphoribosyl-dephospho-CoA synthase MdcB  30.68 
 
 
284 aa  76.3  0.0000000000005  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1319  triphosphoribosyl-dephospho-CoA synthase  31.16 
 
 
307 aa  75.5  0.0000000000008  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_1161  triphosphoribosyl-dephospho-CoA synthase  24.81 
 
 
286 aa  75.1  0.000000000001  Clostridium perfringens SM101  Bacteria  normal  0.0451951  n/a   
 
 
-
 
NC_012912  Dd1591_2611  triphosphoribosyl-dephospho-CoA synthase MdcB  32.69 
 
 
285 aa  73.9  0.000000000003  Dickeya zeae Ech1591  Bacteria  normal  0.16328  n/a   
 
 
-
 
NC_007492  Pfl01_5301  triphosphoribosyl-dephospho-CoA synthase  30.62 
 
 
290 aa  73.6  0.000000000004  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.206727  normal  0.252683 
 
 
-
 
NC_006368  lpp2497  hypothetical protein  25.59 
 
 
280 aa  72.8  0.000000000005  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_007651  BTH_I2798  ATP:dephospho-CoA triphosphoribosyl transferase  31.78 
 
 
330 aa  72.4  0.000000000008  Burkholderia thailandensis E264  Bacteria  normal  0.160388  n/a   
 
 
-
 
NC_008528  OEOE_0425  triphosphoribosyl-dephospho-CoA synthase  27.78 
 
 
274 aa  70.9  0.00000000002  Oenococcus oeni PSU-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_3301  triphosphoribosyl-dephospho-CoA synthase  29.24 
 
 
320 aa  70.5  0.00000000003  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.669404 
 
 
-
 
NC_013522  Taci_0595  Triphosphoribosyl-dephospho-CoA synthase  30.81 
 
 
317 aa  67  0.0000000003  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_0947  triphosphoribosyl-dephospho-CoA synthase  28.68 
 
 
294 aa  66.2  0.0000000005  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.908595  normal 
 
 
-
 
NC_007204  Psyc_1141  ATP:dephospho-CoA triphosphoribosyl transferase  23.95 
 
 
295 aa  57.4  0.0000003  Psychrobacter arcticus 273-4  Bacteria  normal  0.0392227  normal  0.36421 
 
 
-
 
NC_008825  Mpe_A2891  triphosphoribosyl-dephospho-CoA synthase  29.44 
 
 
235 aa  55.5  0.000001  Methylibium petroleiphilum PM1  Bacteria  normal  0.467581  normal 
 
 
-
 
NC_007925  RPC_1054  triphosphoribosyl-dephospho-CoA synthase  27.41 
 
 
300 aa  53.9  0.000003  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_002967  TDE1523  citXG protein, putative  22.59 
 
 
471 aa  53.5  0.000003  Treponema denticola ATCC 35405  Bacteria  normal  n/a   
 
 
-
 
NC_009436  Ent638_3778  triphosphoribosyl-dephospho-CoA synthase  28.65 
 
 
233 aa  52.4  0.000008  Enterobacter sp. 638  Bacteria  normal  normal  0.0120548 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>