More than 300 homologs were found in PanDaTox collection
for query gene Gbem_2737 on replicon NC_011146
Organism: Geobacter bemidjiensis Bem



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002939  GSU1903  3-isopropylmalate dehydratase large subunit  84.78 
 
 
427 aa  763    Geobacter sulfurreducens PCA  Bacteria  normal  0.473608  n/a   
 
 
-
 
NC_010814  Glov_3165  3-isopropylmalate dehydratase large subunit  82.2 
 
 
427 aa  748    Geobacter lovleyi SZ  Bacteria  normal  0.770733  n/a   
 
 
-
 
NC_007498  Pcar_1906  3-isopropylmalate dehydratase large subunit  72.71 
 
 
426 aa  659    Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0606993  n/a   
 
 
-
 
NC_007517  Gmet_1268  3-isopropylmalate dehydratase large subunit  85.01 
 
 
427 aa  764    Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000132862  hitchhiker  0.0000000000181918 
 
 
-
 
NC_011146  Gbem_2737  3-isopropylmalate dehydratase large subunit  100 
 
 
427 aa  881    Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.00000214153  n/a   
 
 
-
 
NC_012918  GM21_1504  3-isopropylmalate dehydratase large subunit  99.3 
 
 
427 aa  877    Geobacter sp. M21  Bacteria  n/a    normal  0.691126 
 
 
-
 
NC_008609  Ppro_0624  3-isopropylmalate dehydratase large subunit  81.26 
 
 
427 aa  736    Pelobacter propionicus DSM 2379  Bacteria  normal  0.588299  n/a   
 
 
-
 
NC_008609  Ppro_1926  3-isopropylmalate dehydratase large subunit  81.26 
 
 
427 aa  736    Pelobacter propionicus DSM 2379  Bacteria  normal  0.700325  n/a   
 
 
-
 
NC_009483  Gura_3709  3-isopropylmalate dehydratase large subunit  85.71 
 
 
427 aa  766    Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.00000129198  n/a   
 
 
-
 
NC_009943  Dole_3159  3-isopropylmalate dehydratase large subunit  71.85 
 
 
431 aa  612  9.999999999999999e-175  Desulfococcus oleovorans Hxd3  Bacteria  hitchhiker  0.000000477252  n/a   
 
 
-
 
NC_011661  Dtur_1191  3-isopropylmalate dehydratase, large subunit  44.96 
 
 
424 aa  387  1e-106  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_014150  Bmur_2220  3-isopropylmalate dehydratase, large subunit  46.59 
 
 
415 aa  383  1e-105  Brachyspira murdochii DSM 12563  Bacteria  normal  n/a   
 
 
-
 
NC_008599  CFF8240_0195  3-isopropylmalate dehydratase large subunit  47.9 
 
 
421 aa  372  1e-102  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_0286  3-isopropylmalate dehydratase large subunit  43.93 
 
 
418 aa  372  1e-102  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_0596  3-isopropylmalate dehydratase large subunit  45.07 
 
 
420 aa  374  1e-102  Desulfotomaculum acetoxidans DSM 771  Bacteria  hitchhiker  0.0000659262  normal 
 
 
-
 
NC_009714  CHAB381_0124  3-isopropylmalate dehydratase large subunit  45.92 
 
 
419 aa  369  1e-101  Campylobacter hominis ATCC BAA-381  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_3356  3-isopropylmalate dehydratase, large subunit  47.42 
 
 
421 aa  368  1e-101  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_0356  3-isopropylmalate dehydratase large subunit  43.9 
 
 
420 aa  370  1e-101  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.928431  n/a   
 
 
-
 
NC_007644  Moth_2254  3-isopropylmalate dehydratase large subunit  47 
 
 
421 aa  368  1e-100  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_011898  Ccel_0126  3-isopropylmalate dehydratase large subunit  45.25 
 
 
419 aa  365  1e-100  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_1588  3-isopropylmalate dehydratase, large subunit  44.39 
 
 
419 aa  365  1e-100  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_009802  CCC13826_2194  3-isopropylmalate dehydratase large subunit  44.88 
 
 
421 aa  365  1e-100  Campylobacter concisus 13826  Bacteria  normal  0.454447  n/a   
 
 
-
 
NC_008025  Dgeo_1030  3-isopropylmalate dehydratase large subunit  44.76 
 
 
431 aa  365  1e-100  Deinococcus geothermalis DSM 11300  Bacteria  normal  hitchhiker  0.000620705 
 
 
-
 
NC_013512  Sdel_2259  3-isopropylmalate dehydratase, large subunit  45.79 
 
 
421 aa  366  1e-100  Sulfurospirillum deleyianum DSM 6946  Bacteria  unclonable  0.0000000792323  n/a   
 
 
-
 
NC_011899  Hore_10870  3-isopropylmalate dehydratase, large subunit  46.05 
 
 
420 aa  365  1e-99  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_2485  3-isopropylmalate dehydratase large subunit  45.24 
 
 
424 aa  363  2e-99  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.836058  n/a   
 
 
-
 
NC_011126  HY04AAS1_0519  3-isopropylmalate dehydratase large subunit  43.69 
 
 
424 aa  363  4e-99  Hydrogenobaculum sp. Y04AAS1  Bacteria  decreased coverage  0.000000192959  n/a   
 
 
-
 
NC_013385  Adeg_0227  3-isopropylmalate dehydratase, large subunit  46.48 
 
 
421 aa  362  8e-99  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_2142  3-isopropylmalate dehydratase large subunit  43.75 
 
 
419 aa  360  2e-98  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.245729  n/a   
 
 
-
 
NC_009012  Cthe_2211  3-isopropylmalate dehydratase large subunit  45.54 
 
 
419 aa  360  3e-98  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.00871543  n/a   
 
 
-
 
NC_012034  Athe_2101  3-isopropylmalate dehydratase large subunit  44.26 
 
 
429 aa  359  4e-98  Anaerocellum thermophilum DSM 6725  Bacteria  normal  0.0493977  n/a   
 
 
-
 
NC_007575  Suden_2017  3-isopropylmalate dehydratase large subunit  43.22 
 
 
419 aa  358  9.999999999999999e-98  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0383  3-isopropylmalate dehydratase large subunit  46.19 
 
 
417 aa  358  9.999999999999999e-98  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0366  3-isopropylmalate dehydratase large subunit  46.42 
 
 
417 aa  357  1.9999999999999998e-97  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009715  CCV52592_0608  3-isopropylmalate dehydratase large subunit  46.15 
 
 
421 aa  357  1.9999999999999998e-97  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_3219  3-isopropylmalate dehydratase large subunit  45.43 
 
 
418 aa  355  6.999999999999999e-97  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1100  3-isopropylmalate dehydratase  43.12 
 
 
418 aa  353  2e-96  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_2987  3-isopropylmalate dehydratase, large subunit  44.37 
 
 
419 aa  351  2e-95  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.0958791  normal 
 
 
-
 
NC_008554  Sfum_3029  3-isopropylmalate dehydratase, large subunit  44.37 
 
 
419 aa  351  2e-95  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.367513 
 
 
-
 
NC_010730  SYO3AOP1_0476  3-isopropylmalate dehydratase large subunit  45.07 
 
 
431 aa  347  3e-94  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  normal  0.0146744  n/a   
 
 
-
 
NC_008751  Dvul_0390  3-isopropylmalate dehydratase large subunit  45.67 
 
 
419 aa  345  7e-94  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_010003  Pmob_1704  homoaconitate hydratase family protein  42.96 
 
 
419 aa  345  8.999999999999999e-94  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1458  3-isopropylmalate dehydratase large subunit  42.76 
 
 
419 aa  344  2e-93  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.888399  normal  0.260054 
 
 
-
 
NC_010320  Teth514_0015  3-isopropylmalate dehydratase large subunit  44.03 
 
 
418 aa  343  2.9999999999999997e-93  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_0376  3-isopropylmalate dehydratase  43.12 
 
 
416 aa  342  5.999999999999999e-93  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_009634  Mevan_0789  homoaconitate hydratase family protein  42.42 
 
 
418 aa  342  7e-93  Methanococcus vannielii SB  Archaea  normal  n/a   
 
 
-
 
NC_011769  DvMF_1792  3-isopropylmalate dehydratase large subunit  44.75 
 
 
418 aa  342  1e-92  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.602442 
 
 
-
 
NC_013173  Dbac_1742  3-isopropylmalate dehydratase large subunit  44.26 
 
 
420 aa  340  2.9999999999999998e-92  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.482523  n/a   
 
 
-
 
NC_011883  Ddes_0506  3-isopropylmalate dehydratase large subunit  41.78 
 
 
420 aa  339  5.9999999999999996e-92  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_2338  homoaconitate hydratase family protein  42.42 
 
 
418 aa  338  9.999999999999999e-92  Desulfotomaculum reducens MI-1  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_0583  3-isopropylmalate dehydratase, large subunit  43.66 
 
 
422 aa  337  1.9999999999999998e-91  Eggerthella lenta DSM 2243  Bacteria  hitchhiker  0.00310931  normal 
 
 
-
 
NC_013926  Aboo_1466  homoaconitate hydratase family protein  42.23 
 
 
429 aa  337  2.9999999999999997e-91  Aciduliprofundum boonei T469  Archaea  normal  0.0167474  n/a   
 
 
-
 
NC_009637  MmarC7_0724  homoaconitate hydratase family protein  41.75 
 
 
418 aa  336  3.9999999999999995e-91  Methanococcus maripaludis C7  Archaea  normal  0.694886  normal  0.102444 
 
 
-
 
NC_007955  Mbur_2263  3-isopropylmalate dehydratase large subunit  45.02 
 
 
413 aa  336  3.9999999999999995e-91  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
NC_007355  Mbar_A1961  3-isopropylmalate dehydratase large subunit  44.08 
 
 
413 aa  335  7.999999999999999e-91  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.344282  normal 
 
 
-
 
NC_002936  DET0828  3-isopropylmalate dehydratase large subunit  41.98 
 
 
416 aa  335  9e-91  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_009135  MmarC5_0436  3-isopropylmalate dehydratase large subunit  41.03 
 
 
424 aa  334  2e-90  Methanococcus maripaludis C5  Archaea  normal  0.560563  n/a   
 
 
-
 
NC_013170  Ccur_04370  3-isopropylmalate dehydratase, large subunit  44.58 
 
 
423 aa  333  3e-90  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal  0.910728 
 
 
-
 
NC_009975  MmarC6_1194  homoaconitate hydratase family protein  41.51 
 
 
418 aa  333  4e-90  Methanococcus maripaludis C6  Archaea  normal  n/a   
 
 
-
 
NC_011898  Ccel_1622  homoaconitate hydratase family protein  40.52 
 
 
418 aa  332  5e-90  Clostridium cellulolyticum H10  Bacteria  normal  n/a   
 
 
-
 
NC_007796  Mhun_2361  homoaconitate hydratase family protein  46.37 
 
 
417 aa  333  5e-90  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.859627 
 
 
-
 
NC_009455  DehaBAV1_0747  3-isopropylmalate dehydratase large subunit  42.45 
 
 
416 aa  332  9e-90  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_009135  MmarC5_0098  3-isopropylmalate dehydratase, large subunit  41.51 
 
 
418 aa  331  2e-89  Methanococcus maripaludis C5  Archaea  normal  n/a   
 
 
-
 
NC_013552  DhcVS_732  3-isopropylmalate dehydratase, large subunit  41.75 
 
 
417 aa  330  3e-89  Dehalococcoides sp. VS  Bacteria  normal  0.999081  n/a   
 
 
-
 
NC_013926  Aboo_0129  homoaconitate hydratase family protein  40 
 
 
418 aa  329  5.0000000000000004e-89  Aciduliprofundum boonei T469  Archaea  normal  0.525388  n/a   
 
 
-
 
NC_013522  Taci_1366  3-isopropylmalate dehydratase  42.11 
 
 
420 aa  329  7e-89  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_1610  homoaconitate hydratase family protein  43.5 
 
 
417 aa  328  9e-89  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_1630  3-isopropylmalate dehydratase  40.14 
 
 
418 aa  327  3e-88  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_009634  Mevan_0471  3-isopropylmalate dehydratase large subunit  39.86 
 
 
424 aa  326  4.0000000000000003e-88  Methanococcus vannielii SB  Archaea  normal  0.699773  n/a   
 
 
-
 
NC_009975  MmarC6_1520  3-isopropylmalate dehydratase large subunit  39.63 
 
 
424 aa  326  6e-88  Methanococcus maripaludis C6  Archaea  normal  0.984893  n/a   
 
 
-
 
NC_009637  MmarC7_0399  3-isopropylmalate dehydratase large subunit  39.39 
 
 
424 aa  325  1e-87  Methanococcus maripaludis C7  Archaea  normal  0.320252  normal 
 
 
-
 
NC_007355  Mbar_A2167  3-isopropylmalate dehydratase large subunit  41.67 
 
 
431 aa  323  2e-87  Methanosarcina barkeri str. Fusaro  Archaea  normal  normal 
 
 
-
 
NC_013412  GYMC61_3567  isopropylmalate isomerase large subunit  40.43 
 
 
477 aa  323  5e-87  Geobacillus sp. Y412MC61  Bacteria  normal  n/a   
 
 
-
 
NC_009635  Maeo_0311  3-isopropylmalate dehydratase  41.59 
 
 
421 aa  322  9.999999999999999e-87  Methanococcus aeolicus Nankai-3  Archaea  normal  n/a   
 
 
-
 
NC_009635  Maeo_0289  3-isopropylmalate dehydratase large subunit  40.23 
 
 
425 aa  321  1.9999999999999998e-86  Methanococcus aeolicus Nankai-3  Archaea  normal  n/a   
 
 
-
 
NC_008553  Mthe_0990  3-isopropylmalate dehydratase large subunit  41.03 
 
 
423 aa  318  1e-85  Methanosaeta thermophila PT  Archaea  normal  n/a   
 
 
-
 
NC_013526  Tter_2762  3-isopropylmalate dehydratase  40.57 
 
 
413 aa  317  3e-85  Thermobaculum terrenum ATCC BAA-798  Bacteria  normal  0.452591  n/a   
 
 
-
 
NC_010644  Emin_0402  3-isopropylmalate dehydratase large subunit  40.56 
 
 
418 aa  316  5e-85  Elusimicrobium minutum Pei191  Bacteria  normal  normal  0.344506 
 
 
-
 
NC_013411  GYMC61_0861  isopropylmalate isomerase large subunit  39.83 
 
 
471 aa  315  7e-85  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009484  Acry_2149  isopropylmalate isomerase large subunit  40.13 
 
 
466 aa  315  9.999999999999999e-85  Acidiphilium cryptum JF-5  Bacteria  normal  0.754808  n/a   
 
 
-
 
NC_009712  Mboo_2075  3-isopropylmalate dehydratase  42.39 
 
 
416 aa  314  1.9999999999999998e-84  Candidatus Methanoregula boonei 6A8  Archaea  normal  normal 
 
 
-
 
NC_008553  Mthe_0788  3-isopropylmalate dehydratase  43.29 
 
 
382 aa  313  4.999999999999999e-84  Methanosaeta thermophila PT  Archaea  normal  n/a   
 
 
-
 
NC_010085  Nmar_0420  3-isopropylmalate dehydratase  42.51 
 
 
422 aa  311  1e-83  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal  0.0665356 
 
 
-
 
NC_002936  DET0448  3-isopropylmalate dehydratase large subunit  41.26 
 
 
417 aa  310  2.9999999999999997e-83  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1189  isopropylmalate isomerase large subunit  39.09 
 
 
472 aa  309  5e-83  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.672672  n/a   
 
 
-
 
NC_012793  GWCH70_2591  isopropylmalate isomerase large subunit  39.18 
 
 
471 aa  309  5.9999999999999995e-83  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.00933091  n/a   
 
 
-
 
NC_008255  CHU_3742  isopropylmalate isomerase large subunit  37.39 
 
 
466 aa  308  1.0000000000000001e-82  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_009455  DehaBAV1_0425  3-isopropylmalate dehydratase large subunit  41.72 
 
 
431 aa  308  1.0000000000000001e-82  Dehalococcoides sp. BAV1  Bacteria  normal  n/a   
 
 
-
 
NC_009719  Plav_1423  3-isopropylmalate dehydratase, large subunit  38.81 
 
 
473 aa  307  2.0000000000000002e-82  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_013552  DhcVS_390  aconitase/homoaconitase/3-isopropylmalate dehydratase, large subunit  40.56 
 
 
417 aa  306  5.0000000000000004e-82  Dehalococcoides sp. VS  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_1036  homoaconitate hydratase family protein  39.86 
 
 
418 aa  306  5.0000000000000004e-82  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_007955  Mbur_1883  3-isopropylmalate dehydratase large subunit  42 
 
 
428 aa  305  8.000000000000001e-82  Methanococcoides burtonii DSM 6242  Archaea  normal  n/a   
 
 
-
 
BN001301  ANIA_05886  alpha isopropylmalate isomerase (Eurofung)  38.19 
 
 
772 aa  305  1.0000000000000001e-81  Aspergillus nidulans FGSC A4  Eukaryota  decreased coverage  0.00198619  normal  0.994666 
 
 
-
 
NC_011138  MADE_03087  isopropylmalate isomerase large subunit  38.33 
 
 
466 aa  305  1.0000000000000001e-81  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_011832  Mpal_0185  homoaconitate hydratase family protein  42.86 
 
 
419 aa  304  2.0000000000000002e-81  Methanosphaerula palustris E1-9c  Archaea  normal  0.576372  normal  0.0771341 
 
 
-
 
NC_008709  Ping_1669  3-isopropylmalate dehydratase, large subunit  40.72 
 
 
465 aa  304  2.0000000000000002e-81  Psychromonas ingrahamii 37  Bacteria  normal  0.0233654  normal 
 
 
-
 
NC_008148  Rxyl_1693  homoaconitate hydratase family protein  40.15 
 
 
424 aa  303  6.000000000000001e-81  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.27842  n/a   
 
 
-
 
NC_012912  Dd1591_0592  3-isopropylmalate dehydratase, large subunit  39.48 
 
 
466 aa  301  1e-80  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_2225  3-isopropylmalate dehydratase, large subunit  39.61 
 
 
471 aa  301  2e-80  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.918253  n/a   
 
 
-
 
NC_009523  RoseRS_1961  isopropylmalate isomerase large subunit  38.25 
 
 
474 aa  300  2e-80  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
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