More than 300 homologs were found in PanDaTox collection
for query gene Gbem_2420 on replicon NC_011146
Organism: Geobacter bemidjiensis Bem



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011146  Gbem_2420  response regulator receiver protein  100 
 
 
292 aa  592  1e-168  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1797  response regulator receiver protein  95.89 
 
 
292 aa  573  1.0000000000000001e-162  Geobacter sp. M21  Bacteria  n/a    normal  0.0698667 
 
 
-
 
NC_009483  Gura_0978  response regulator receiver protein  46.13 
 
 
280 aa  266  4e-70  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000299391  n/a   
 
 
-
 
NC_011146  Gbem_2281  response regulator receiver protein  45.62 
 
 
280 aa  251  8.000000000000001e-66  Geobacter bemidjiensis Bem  Bacteria  normal  0.217898  n/a   
 
 
-
 
NC_012918  GM21_1942  response regulator receiver protein  45.99 
 
 
280 aa  251  1e-65  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008609  Ppro_2813  response regulator receiver protein  40.37 
 
 
274 aa  213  1.9999999999999998e-54  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2262  response regulator receiver protein  37.97 
 
 
281 aa  204  1e-51  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_0372  response regulator receiver protein  39.18 
 
 
340 aa  199  3e-50  Geobacter lovleyi SZ  Bacteria  normal  0.463682  n/a   
 
 
-
 
NC_007517  Gmet_1737  response regulator receiver domain-containing protein  37.69 
 
 
277 aa  197  1.0000000000000001e-49  Geobacter metallireducens GS-15  Bacteria  normal  0.570794  normal  0.630295 
 
 
-
 
NC_002939  GSU1220  response regulator  37.45 
 
 
277 aa  192  8e-48  Geobacter sulfurreducens PCA  Bacteria  normal  0.327631  n/a   
 
 
-
 
NC_009483  Gura_2299  response regulator receiver protein  36.06 
 
 
275 aa  177  3e-43  Geobacter uraniireducens Rf4  Bacteria  normal  0.0218685  n/a   
 
 
-
 
NC_012918  GM21_1135  response regulator receiver protein  35.71 
 
 
283 aa  169  4e-41  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011146  Gbem_3127  response regulator receiver protein  36.09 
 
 
283 aa  169  5e-41  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_0930  response regulator receiver protein  26.22 
 
 
456 aa  83.6  0.000000000000004  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.139996  normal  0.100238 
 
 
-
 
NC_013132  Cpin_2687  response regulator receiver sensor signal transduction histidine kinase  35.07 
 
 
1013 aa  83.2  0.000000000000005  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.70216  normal 
 
 
-
 
NC_009428  Rsph17025_1793  response regulator receiver protein  34.78 
 
 
122 aa  83.2  0.000000000000005  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_009049  Rsph17029_1101  response regulator receiver protein  33.91 
 
 
122 aa  82.4  0.000000000000008  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.956043  normal 
 
 
-
 
NC_007493  RSP_2437  chemotaxis response regulator, CheY1  33.91 
 
 
122 aa  81.6  0.00000000000001  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.365798  n/a   
 
 
-
 
NC_010622  Bphy_0135  multi-sensor hybrid histidine kinase  37.4 
 
 
1631 aa  81.6  0.00000000000002  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_2357  putative PAS/PAC sensor protein  34.71 
 
 
381 aa  79.7  0.00000000000006  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007413  Ava_1086  multi-sensor hybrid histidine kinase  39.82 
 
 
1431 aa  79.3  0.00000000000007  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_3553  transcriptional regulator, Crp/Fnr family  39.13 
 
 
348 aa  79.3  0.00000000000007  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.528491 
 
 
-
 
NC_009483  Gura_4171  CheA signal transduction histidine kinase  33.9 
 
 
686 aa  79  0.00000000000008  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_2831  multi-sensor hybrid histidine kinase  38.32 
 
 
1407 aa  79  0.00000000000008  Thauera sp. MZ1T  Bacteria  normal  0.160519  n/a   
 
 
-
 
NC_013422  Hneap_0134  response regulator receiver protein  35.83 
 
 
123 aa  79  0.0000000000001  Halothiobacillus neapolitanus c2  Bacteria  normal  0.81317  n/a   
 
 
-
 
NC_013730  Slin_1040  response regulator receiver sensor signal transduction histidine kinase  34.43 
 
 
365 aa  78.2  0.0000000000001  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_0873  response regulator receiver domain-containing protein  26.03 
 
 
483 aa  78.6  0.0000000000001  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.0633299  n/a   
 
 
-
 
NC_011832  Mpal_1331  multi-sensor signal transduction histidine kinase  35.25 
 
 
576 aa  77.8  0.0000000000002  Methanosphaerula palustris E1-9c  Archaea  normal  normal 
 
 
-
 
NC_007517  Gmet_2428  response regulator receiver domain-containing protein  34.75 
 
 
128 aa  77.4  0.0000000000002  Geobacter metallireducens GS-15  Bacteria  normal  0.0310268  normal 
 
 
-
 
NC_013730  Slin_6436  histidine kinase  36.07 
 
 
1418 aa  77.4  0.0000000000002  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_007520  Tcr_0166  response regulator receiver/GGDEF/EAL domain-containing protein  37.29 
 
 
697 aa  77.4  0.0000000000003  Thiomicrospira crunogena XCL-2  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_1860  two component LuxR family transcriptional regulator  35.29 
 
 
235 aa  77  0.0000000000003  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_2998  PAS/PAC sensor hybrid histidine kinase  31.06 
 
 
807 aa  77  0.0000000000004  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.745142 
 
 
-
 
NC_007948  Bpro_2468  PAS/PAC sensor hybrid histidine kinase  35.83 
 
 
1049 aa  77  0.0000000000004  Polaromonas sp. JS666  Bacteria  normal  0.858637  normal  0.0946099 
 
 
-
 
NC_013223  Dret_2392  two component, sigma54 specific, transcriptional regulator, Fis family  31.5 
 
 
458 aa  76.6  0.0000000000004  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.0321511  normal 
 
 
-
 
NC_008322  Shewmr7_3548  multi-sensor hybrid histidine kinase  35.07 
 
 
1681 aa  76.3  0.0000000000005  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_007517  Gmet_2712  response regulator receiver sensor signal transduction histidine kinase  32.03 
 
 
414 aa  76.3  0.0000000000006  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU1289  chemotaxis protein CheY  33.05 
 
 
121 aa  75.9  0.0000000000008  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_2212  sensor histidine kinase/response regulator  34.43 
 
 
641 aa  75.9  0.0000000000008  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.378364  n/a   
 
 
-
 
NC_009767  Rcas_0846  response regulator receiver protein  37.01 
 
 
139 aa  75.5  0.0000000000009  Roseiflexus castenholzii DSM 13941  Bacteria  normal  hitchhiker  0.00282438 
 
 
-
 
NC_008312  Tery_3248  response regulator receiver protein  31.58 
 
 
121 aa  75.5  0.0000000000009  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.500247 
 
 
-
 
NC_007434  BURPS1710b_2192  DNA-binding response regulator  34.68 
 
 
237 aa  74.7  0.000000000001  Burkholderia pseudomallei 1710b  Bacteria  normal  0.602573  n/a   
 
 
-
 
NC_009076  BURPS1106A_2053  DNA-binding response regulator  34.68 
 
 
237 aa  75.1  0.000000000001  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_008577  Shewana3_0480  putative PAS/PAC sensor protein  28.1 
 
 
1686 aa  75.1  0.000000000001  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU1038  sensory box histidine kinase/response regulator  35.25 
 
 
513 aa  74.7  0.000000000002  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_010557  BamMC406_5929  two component AraC family transcriptional regulator  30.17 
 
 
277 aa  74.3  0.000000000002  Burkholderia ambifaria MC40-6  Bacteria  normal  0.473719  normal 
 
 
-
 
NC_007298  Daro_1009  response regulator receiver:ATP-binding region, ATPase-like:histidine kinase A, N-terminal  35.54 
 
 
655 aa  74.7  0.000000000002  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_2150  response regulator receiver Signal transduction histidine kinase  33.33 
 
 
443 aa  74.7  0.000000000002  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.394463 
 
 
-
 
NC_012034  Athe_0580  response regulator receiver protein  37.72 
 
 
123 aa  74.7  0.000000000002  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_007796  Mhun_0493  response regulator receiver sensor signal transduction histidine kinase  35.59 
 
 
440 aa  74.7  0.000000000002  Methanospirillum hungatei JF-1  Archaea  normal  0.274957  normal 
 
 
-
 
NC_007796  Mhun_0986  response regulator receiver sensor signal transduction histidine kinase  34.96 
 
 
433 aa  74.7  0.000000000002  Methanospirillum hungatei JF-1  Archaea  normal  0.0645349  normal  0.624976 
 
 
-
 
NC_009972  Haur_1220  response regulator receiver protein  30.7 
 
 
130 aa  74.7  0.000000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_007947  Mfla_1243  response regulator receiver domain-containing protein  35.09 
 
 
121 aa  74.3  0.000000000002  Methylobacillus flagellatus KT  Bacteria  normal  normal  0.253807 
 
 
-
 
NC_008321  Shewmr4_0482  multi-sensor hybrid histidine kinase  35.94 
 
 
1681 aa  74.3  0.000000000002  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_013889  TK90_2396  CheA signal transduction histidine kinase  30.77 
 
 
1832 aa  74.7  0.000000000002  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.412957 
 
 
-
 
NC_008576  Mmc1_3394  PAS/PAC sensor hybrid histidine kinase  32.17 
 
 
560 aa  74.7  0.000000000002  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_008578  Acel_2099  response regulator receiver modulated diguanylate phosphodiesterase  33.06 
 
 
402 aa  73.9  0.000000000003  Acidothermus cellulolyticus 11B  Bacteria  normal  normal  0.316821 
 
 
-
 
NC_010002  Daci_3831  GAF sensor hybrid histidine kinase  34.43 
 
 
1177 aa  73.9  0.000000000003  Delftia acidovorans SPH-1  Bacteria  normal  0.195944  normal  0.0220401 
 
 
-
 
NC_008789  Hhal_2168  response regulator receiver protein  34.21 
 
 
120 aa  73.9  0.000000000003  Halorhodospira halophila SL1  Bacteria  normal  0.747517  n/a   
 
 
-
 
NC_010571  Oter_0776  multi-sensor hybrid histidine kinase  34.4 
 
 
1559 aa  73.9  0.000000000003  Opitutus terrae PB90-1  Bacteria  normal  normal 
 
 
-
 
NC_009523  RoseRS_2346  histidine kinase  34.07 
 
 
372 aa  73.9  0.000000000003  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_0359  CheA signal transduction histidine kinases  28.05 
 
 
1834 aa  73.6  0.000000000003  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.505566  normal  0.609353 
 
 
-
 
NC_008392  Bamb_6198  two component AraC family transcriptional regulator  29.31 
 
 
277 aa  73.9  0.000000000003  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_013216  Dtox_1013  two component, sigma54 specific, transcriptional regulator, Fis family  33.33 
 
 
456 aa  73.6  0.000000000004  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal  0.0616674 
 
 
-
 
NC_010524  Lcho_0045  adenylate/guanylate cyclase  35.4 
 
 
382 aa  73.6  0.000000000004  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_013757  Gobs_4814  histidine kinase  33.85 
 
 
919 aa  73.6  0.000000000004  Geodermatophilus obscurus DSM 43160  Bacteria  decreased coverage  0.00150972  n/a   
 
 
-
 
NC_007493  RSP_2443  putative chemotaxis response regulator, CheY5  33.62 
 
 
122 aa  73.2  0.000000000004  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.451762  n/a   
 
 
-
 
NC_009049  Rsph17029_1107  response regulator receiver protein  33.62 
 
 
122 aa  73.2  0.000000000004  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.91502 
 
 
-
 
NC_011145  AnaeK_2310  two component, sigma54 specific, transcriptional regulator, Fis family  33.61 
 
 
469 aa  73.2  0.000000000004  Anaeromyxobacter sp. K  Bacteria  normal  0.294968  n/a   
 
 
-
 
NC_010625  Bphy_6560  integral membrane sensor hybrid histidine kinase  32.79 
 
 
720 aa  73.6  0.000000000004  Burkholderia phymatum STM815  Bacteria  normal  0.441976  normal  0.646619 
 
 
-
 
NC_006693  CNH02350  protein-histidine kinase, putative  34.35 
 
 
1614 aa  73.2  0.000000000005  Cryptococcus neoformans var. neoformans JEC21  Eukaryota  normal  0.16806  n/a   
 
 
-
 
NC_007005  Psyr_2021  response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal  33.62 
 
 
645 aa  73.2  0.000000000005  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.798842  normal 
 
 
-
 
NC_007005  Psyr_3716  response regulator receiver:transcriptional regulatory protein, C-terminal  37.8 
 
 
247 aa  73.2  0.000000000005  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.422774  normal  0.0121745 
 
 
-
 
NC_009483  Gura_1547  response regulator receiver sensor signal transduction histidine kinase  37.5 
 
 
520 aa  73.2  0.000000000005  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_0540  GAF sensor hybrid histidine kinase  37.96 
 
 
1816 aa  73.2  0.000000000005  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.46685  normal 
 
 
-
 
NC_009428  Rsph17025_1787  response regulator receiver protein  33.62 
 
 
122 aa  73.2  0.000000000005  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_2324  two component LuxR family transcriptional regulator  37.86 
 
 
245 aa  73.2  0.000000000005  Anabaena variabilis ATCC 29413  Bacteria  normal  0.42123  normal 
 
 
-
 
NC_011891  A2cp1_2398  two component, sigma54 specific, transcriptional regulator, Fis family  33.61 
 
 
469 aa  73.2  0.000000000005  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.313034  n/a   
 
 
-
 
NC_007948  Bpro_3898  multi-sensor signal transduction histidine kinase  34.11 
 
 
1003 aa  73.2  0.000000000005  Polaromonas sp. JS666  Bacteria  normal  0.504038  normal  0.0804481 
 
 
-
 
NC_007952  Bxe_B0221  GAF sensor hybrid histidine kinase  34.19 
 
 
1651 aa  73.2  0.000000000005  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_3000  response regulator receiver protein  30.17 
 
 
124 aa  73.2  0.000000000005  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_009921  Franean1_4386  histidine kinase  34.75 
 
 
411 aa  73.2  0.000000000006  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_5566  GAF sensor hybrid histidine kinase  33.03 
 
 
1203 aa  72.8  0.000000000006  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.0247633 
 
 
-
 
NC_013522  Taci_0090  two component transcriptional regulator, winged helix family  34.68 
 
 
228 aa  72.8  0.000000000006  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_1477  response regulator receiver modulated diguanylate cyclase  32.2 
 
 
317 aa  72.8  0.000000000006  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1555  two component, sigma54 specific, Fis family transcriptional regulator  33.61 
 
 
467 aa  72.8  0.000000000006  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.21045  n/a   
 
 
-
 
NC_010511  M446_3558  multi-sensor hybrid histidine kinase  33.96 
 
 
984 aa  73.2  0.000000000006  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.299477 
 
 
-
 
NC_014165  Tbis_0845  response regulator receiver protein  31.36 
 
 
125 aa  72.8  0.000000000007  Thermobispora bispora DSM 43833  Bacteria  normal  0.455865  normal  0.167506 
 
 
-
 
NC_009523  RoseRS_0337  response regulator receiver protein  36.51 
 
 
139 aa  72.8  0.000000000007  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0132867 
 
 
-
 
NC_008255  CHU_2784  multi-sensor hybrid histidine kinase  32.28 
 
 
1222 aa  72.4  0.000000000007  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.0520121 
 
 
-
 
NC_011891  A2cp1_3625  response regulator receiver modulated diguanylate cyclase  31.62 
 
 
322 aa  72.8  0.000000000007  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1896  PAS/PAC sensor hybrid histidine kinase  38.32 
 
 
865 aa  72.4  0.000000000008  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_0550  histidine kinase  31.39 
 
 
1388 aa  72.4  0.000000000008  Spirosoma linguale DSM 74  Bacteria  normal  0.23656  normal  0.89256 
 
 
-
 
NC_011729  PCC7424_1976  multi-sensor signal transduction histidine kinase  33.61 
 
 
1383 aa  72.4  0.000000000008  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.624185 
 
 
-
 
NC_010505  Mrad2831_2159  PAS/PAC sensor hybrid histidine kinase  33.9 
 
 
796 aa  72.4  0.000000000009  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.758044 
 
 
-
 
NC_010338  Caul_0278  response regulator receiver protein  31.03 
 
 
121 aa  72.4  0.000000000009  Caulobacter sp. K31  Bacteria  normal  0.143889  normal  0.948049 
 
 
-
 
NC_007498  Pcar_2316  response regulator  30.77 
 
 
527 aa  72.4  0.000000000009  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.0000000000000645629  n/a   
 
 
-
 
NC_007952  Bxe_B1713  two component LuxR family transcriptional regulator  32.82 
 
 
361 aa  72.4  0.000000000009  Burkholderia xenovorans LB400  Bacteria  normal  0.310925  normal 
 
 
-
 
NC_009901  Spea_0302  response regulator receiver modulated serine phosphatase  36 
 
 
400 aa  71.6  0.00000000001  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_0417  two component, sigma54 specific, Fis family transcriptional regulator  36.72 
 
 
474 aa  71.6  0.00000000001  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.45134  n/a   
 
 
-
 
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