More than 300 homologs were found in PanDaTox collection
for query gene Francci3_3029 on replicon NC_007777
Organism: Frankia sp. CcI3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007777  Francci3_3029  two component transcriptional regulator  100 
 
 
265 aa  506  9.999999999999999e-143  Frankia sp. CcI3  Bacteria  normal  normal  0.253727 
 
 
-
 
NC_013172  Bfae_21090  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  49.55 
 
 
231 aa  191  1e-47  Brachybacterium faecium DSM 4810  Bacteria  normal  0.664911  n/a   
 
 
-
 
NC_003909  BCE_1413  DNA-binding response regulator  39.91 
 
 
223 aa  182  4.0000000000000006e-45  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A1453  DNA-binding response regulator  39.91 
 
 
223 aa  182  4.0000000000000006e-45  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_1389  DNA-binding response regulator  39.46 
 
 
223 aa  181  1e-44  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_005957  BT9727_1191  response regulator  39.91 
 
 
223 aa  181  1e-44  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1193  response regulator  39.46 
 
 
223 aa  181  1e-44  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_1924  two component transcriptional regulator, winged helix family  41.1 
 
 
225 aa  181  1e-44  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_2983  two component transcriptional regulator  44.09 
 
 
228 aa  181  1e-44  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B3993  DNA-binding response regulator  40.45 
 
 
223 aa  181  1e-44  Bacillus cereus G9842  Bacteria  normal  normal  0.910988 
 
 
-
 
NC_005945  BAS1213  DNA-binding response regulator  40 
 
 
223 aa  179  2.9999999999999997e-44  Bacillus anthracis str. Sterne  Bacteria  normal  0.203275  n/a   
 
 
-
 
NC_007530  GBAA_1312  DNA-binding response regulator  40 
 
 
223 aa  179  2.9999999999999997e-44  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_3539  two component transcriptional regulator, winged helix family  46.64 
 
 
268 aa  179  4.999999999999999e-44  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.224989  normal 
 
 
-
 
NC_011830  Dhaf_3739  two component transcriptional regulator, winged helix family  40.72 
 
 
230 aa  179  4.999999999999999e-44  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.0000000000466515  n/a   
 
 
-
 
NC_009012  Cthe_1916  two component transcriptional regulator  41.78 
 
 
228 aa  178  7e-44  Clostridium thermocellum ATCC 27405  Bacteria  normal  0.400732  n/a   
 
 
-
 
NC_011725  BCB4264_A1351  DNA-binding response regulator  40 
 
 
223 aa  178  8e-44  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_2083  two component transcriptional regulator, winged helix family  45.3 
 
 
237 aa  176  2e-43  Jonesia denitrificans DSM 20603  Bacteria  normal  0.873655  normal 
 
 
-
 
NC_007777  Francci3_0978  two component transcriptional regulator  45.87 
 
 
321 aa  176  2e-43  Frankia sp. CcI3  Bacteria  normal  0.323902  normal 
 
 
-
 
NC_013385  Adeg_1028  two component transcriptional regulator, winged helix family  43.53 
 
 
237 aa  176  4e-43  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_013385  Adeg_1897  two component transcriptional regulator, winged helix family  44.89 
 
 
229 aa  175  7e-43  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_4856  two component transcriptional regulator  46.9 
 
 
229 aa  174  9.999999999999999e-43  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0324014 
 
 
-
 
NC_014248  Aazo_2678  winged helix family two component transcriptional regulator  40.85 
 
 
240 aa  174  9.999999999999999e-43  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1215  two component transcriptional regulator  38.12 
 
 
223 aa  173  2.9999999999999996e-42  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.533573  n/a   
 
 
-
 
NC_009380  Strop_2454  response regulator receiver  46.46 
 
 
334 aa  173  2.9999999999999996e-42  Salinispora tropica CNB-440  Bacteria  normal  0.811467  normal  0.554659 
 
 
-
 
NC_011899  Hore_04710  two component transcriptional regulator, winged helix family  41.56 
 
 
237 aa  172  5e-42  Halothermothrix orenii H 168  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_0513  two component transcriptional regulator, winged helix family  45.25 
 
 
228 aa  172  6.999999999999999e-42  Rhodothermus marinus DSM 4252  Bacteria  normal  0.985837  n/a   
 
 
-
 
NC_014210  Ndas_3846  two component transcriptional regulator, winged helix family  47.98 
 
 
222 aa  171  9e-42  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_0070  two component transcriptional regulator  40.36 
 
 
229 aa  171  1e-41  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal  0.834843 
 
 
-
 
NC_009523  RoseRS_2290  two component transcriptional regulator  46.15 
 
 
224 aa  171  1e-41  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1240  response regulator receiver  45.26 
 
 
234 aa  171  1e-41  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_4122  two component transcriptional regulator, winged helix family  46.26 
 
 
223 aa  170  2e-41  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_2487  two component transcriptional regulator  45.7 
 
 
224 aa  170  2e-41  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.431556  normal 
 
 
-
 
NC_013525  Tter_1435  two component transcriptional regulator, winged helix family  44.74 
 
 
233 aa  170  2e-41  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008347  Mmar10_0483  two component transcriptional regulator  44.2 
 
 
229 aa  169  3e-41  Maricaulis maris MCS10  Bacteria  normal  0.342081  normal 
 
 
-
 
NC_014210  Ndas_4793  two component transcriptional regulator, winged helix family  48.21 
 
 
219 aa  169  4e-41  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.732153 
 
 
-
 
NC_007604  Synpcc7942_0556  two component transcriptional regulator  42.86 
 
 
237 aa  169  5e-41  Synechococcus elongatus PCC 7942  Bacteria  normal  0.451756  normal 
 
 
-
 
NC_009767  Rcas_2782  two component transcriptional regulator  44.64 
 
 
231 aa  169  5e-41  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.92379  normal 
 
 
-
 
NC_013131  Caci_8215  two component transcriptional regulator, winged helix family  43.36 
 
 
226 aa  168  7e-41  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_0715  two component transcriptional regulator, winged helix family  47.25 
 
 
224 aa  168  9e-41  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013947  Snas_4021  two component transcriptional regulator, winged helix family  41 
 
 
235 aa  168  9e-41  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_1351  two component transcriptional regulator, winged helix family  45.74 
 
 
225 aa  168  9e-41  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.00188361  unclonable  0.0000000206018 
 
 
-
 
NC_007333  Tfu_2549  response regulator receiver  47.53 
 
 
222 aa  168  1e-40  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_2799  two component transcriptional regulator  43.67 
 
 
236 aa  167  1e-40  Herpetosiphon aurantiacus ATCC 23779  Bacteria  unclonable  0.000000368356  n/a   
 
 
-
 
NC_009380  Strop_1197  response regulator receiver  45.5 
 
 
230 aa  167  1e-40  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_007644  Moth_1478  two component transcriptional regulator  45.58 
 
 
240 aa  167  2e-40  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.0000111909  normal 
 
 
-
 
NC_012034  Athe_0280  two component transcriptional regulator, winged helix family  42.15 
 
 
225 aa  167  2e-40  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_1021  two component transcriptional regulator  38.18 
 
 
223 aa  167  2e-40  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_007335  PMN2A_0436  two component transcriptional regulator  37.18 
 
 
245 aa  166  2.9999999999999998e-40  Prochlorococcus marinus str. NATL2A  Bacteria  normal  0.18923  n/a   
 
 
-
 
NC_014165  Tbis_0707  winged helix family two component transcriptional regulator  47.53 
 
 
222 aa  166  2.9999999999999998e-40  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_012034  Athe_0080  two component transcriptional regulator, winged helix family  37.44 
 
 
230 aa  166  4e-40  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1333  response regulator receiver protein  47.53 
 
 
222 aa  166  5e-40  Streptosporangium roseum DSM 43021  Bacteria  normal  0.40527  normal  0.1595 
 
 
-
 
NC_009921  Franean1_6985  two component transcriptional regulator  48.25 
 
 
229 aa  166  5e-40  Frankia sp. EAN1pec  Bacteria  normal  0.0162975  normal 
 
 
-
 
NC_009953  Sare_1693  two component transcriptional regulator  46.58 
 
 
229 aa  165  5.9999999999999996e-40  Salinispora arenicola CNS-205  Bacteria  normal  decreased coverage  0.000234642 
 
 
-
 
NC_013510  Tcur_1461  two component transcriptional regulator, winged helix family  45.5 
 
 
225 aa  165  5.9999999999999996e-40  Thermomonospora curvata DSM 43183  Bacteria  normal  0.616357  n/a   
 
 
-
 
NC_013093  Amir_5698  two component transcriptional regulator, winged helix family  50.22 
 
 
222 aa  165  5.9999999999999996e-40  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0896567  n/a   
 
 
-
 
NC_013595  Sros_7254  response regulator receiver protein  45.61 
 
 
225 aa  165  6.9999999999999995e-40  Streptosporangium roseum DSM 43021  Bacteria  normal  0.832029  normal  0.122444 
 
 
-
 
NC_008025  Dgeo_2318  two component transcriptional regulator  46.61 
 
 
225 aa  165  8e-40  Deinococcus geothermalis DSM 11300  Bacteria  normal  0.642935  normal 
 
 
-
 
NC_013411  GYMC61_0785  two component transcriptional regulator, winged helix family  38.96 
 
 
235 aa  165  8e-40  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013501  Rmar_0987  two component transcriptional regulator, winged helix family  44.44 
 
 
233 aa  165  8e-40  Rhodothermus marinus DSM 4252  Bacteria  normal  0.195539  n/a   
 
 
-
 
NC_008819  NATL1_11471  two-component response regulator, phosphate  37.18 
 
 
245 aa  165  9e-40  Prochlorococcus marinus str. NATL1A  Bacteria  normal  normal  0.0202491 
 
 
-
 
NC_013216  Dtox_2729  two component transcriptional regulator, winged helix family  39.38 
 
 
228 aa  164  1.0000000000000001e-39  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.981161  normal  0.424997 
 
 
-
 
NC_007413  Ava_4914  two component transcriptional regulator  38.86 
 
 
238 aa  164  1.0000000000000001e-39  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.095278 
 
 
-
 
NC_013131  Caci_0835  two component transcriptional regulator, winged helix family  47.11 
 
 
222 aa  164  1.0000000000000001e-39  Catenulispora acidiphila DSM 44928  Bacteria  normal  hitchhiker  0.0000000540746 
 
 
-
 
NC_013595  Sros_2839  response regulator receiver protein  45.37 
 
 
228 aa  164  1.0000000000000001e-39  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0400316  normal  0.0390199 
 
 
-
 
NC_014210  Ndas_4514  two component transcriptional regulator, winged helix family  49.55 
 
 
225 aa  164  1.0000000000000001e-39  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.592764 
 
 
-
 
NC_013235  Namu_4929  two component transcriptional regulator, winged helix family  42.41 
 
 
226 aa  164  1.0000000000000001e-39  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013385  Adeg_0644  two component transcriptional regulator, winged helix family  43.3 
 
 
236 aa  164  1.0000000000000001e-39  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_4523  two component transcriptional regulator  43.7 
 
 
251 aa  164  1.0000000000000001e-39  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_1447  two component transcriptional regulator, winged helix family  46.19 
 
 
222 aa  163  2.0000000000000002e-39  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_13280  two component transcriptional regulator, winged helix family  38.84 
 
 
227 aa  163  2.0000000000000002e-39  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.0000000536961  n/a   
 
 
-
 
NC_013510  Tcur_3363  two component transcriptional regulator, winged helix family  47.26 
 
 
233 aa  163  2.0000000000000002e-39  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00866984  n/a   
 
 
-
 
NC_009338  Mflv_0082  two component transcriptional regulator  42.92 
 
 
228 aa  164  2.0000000000000002e-39  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_0997  response regulator receiver  41.59 
 
 
228 aa  163  3e-39  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_0827  two component transcriptional regulator  44.16 
 
 
256 aa  163  3e-39  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.00211389  normal  0.244563 
 
 
-
 
NC_011830  Dhaf_1529  two component transcriptional regulator, winged helix family  37.89 
 
 
228 aa  163  3e-39  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_2219  two component transcriptional regulator, winged helix family  38.7 
 
 
240 aa  162  4.0000000000000004e-39  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_1131  two component transcriptional regulator  47.09 
 
 
226 aa  162  4.0000000000000004e-39  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_010816  BLD_1073  putative response regulator  40.52 
 
 
234 aa  162  4.0000000000000004e-39  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_011666  Msil_0434  two component transcriptional regulator, winged helix family  42.15 
 
 
236 aa  162  4.0000000000000004e-39  Methylocella silvestris BL2  Bacteria  n/a    normal  0.569156 
 
 
-
 
NC_013441  Gbro_2604  response regulator receiver  42.36 
 
 
244 aa  162  4.0000000000000004e-39  Gordonia bronchialis DSM 43247  Bacteria  normal  0.88392  n/a   
 
 
-
 
NC_013441  Gbro_4233  response regulator receiver  42.36 
 
 
244 aa  162  4.0000000000000004e-39  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_3267  two component transcriptional regulator, winged helix family  46.61 
 
 
220 aa  162  4.0000000000000004e-39  Burkholderia phytofirmans PsJN  Bacteria  normal  0.387524  normal 
 
 
-
 
NC_009719  Plav_0399  two component transcriptional regulator  39.7 
 
 
272 aa  162  4.0000000000000004e-39  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.802217  normal 
 
 
-
 
NC_010725  Mpop_1407  two component transcriptional regulator, winged helix family  42.29 
 
 
225 aa  162  5.0000000000000005e-39  Methylobacterium populi BJ001  Bacteria  normal  0.440596  normal  0.126744 
 
 
-
 
NC_009565  TBFG_10499  two component system sensor transduction protein regX3  43.11 
 
 
227 aa  162  5.0000000000000005e-39  Mycobacterium tuberculosis F11  Bacteria  decreased coverage  2.46064e-66  normal 
 
 
-
 
NC_012803  Mlut_18360  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  42.92 
 
 
239 aa  162  6e-39  Micrococcus luteus NCTC 2665  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1155  two component transcriptional regulator, winged helix family  46.43 
 
 
230 aa  162  6e-39  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.560017  normal 
 
 
-
 
NC_008025  Dgeo_1522  two component transcriptional regulator  43.36 
 
 
227 aa  162  6e-39  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_1200  two component transcriptional regulator  38.43 
 
 
238 aa  162  6e-39  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_1411  response regulator receiver  42.29 
 
 
225 aa  162  7e-39  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.110033 
 
 
-
 
NC_007760  Adeh_3856  two component transcriptional regulator  46.49 
 
 
227 aa  162  7e-39  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.199978  n/a   
 
 
-
 
NC_008578  Acel_1606  two component transcriptional regulator  43.7 
 
 
230 aa  162  7e-39  Acidothermus cellulolyticus 11B  Bacteria  normal  0.307098  normal  0.688459 
 
 
-
 
NC_011757  Mchl_1685  two component transcriptional regulator, winged helix family  42.29 
 
 
225 aa  162  7e-39  Methylobacterium chloromethanicum CM4  Bacteria  decreased coverage  0.00118059  normal 
 
 
-
 
NC_008541  Arth_0587  two component transcriptional regulator  45.05 
 
 
222 aa  162  8.000000000000001e-39  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_0588  two component transcriptional regulator, winged helix family  40.79 
 
 
226 aa  162  8.000000000000001e-39  Geobacter lovleyi SZ  Bacteria  normal  0.944339  n/a   
 
 
-
 
NC_013595  Sros_5447  response regulator receiver protein  44.93 
 
 
228 aa  161  9e-39  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.00883739  normal  0.15212 
 
 
-
 
NC_014158  Tpau_3286  two component transcriptional regulator, winged helix family  44.49 
 
 
228 aa  161  9e-39  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.167791  n/a   
 
 
-
 
NC_013093  Amir_2151  two component transcriptional regulator, winged helix family  45.7 
 
 
217 aa  161  9e-39  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.0000920449  n/a   
 
 
-
 
NC_011894  Mnod_4171  two component transcriptional regulator, winged helix family  42.67 
 
 
225 aa  161  1e-38  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_0893  winged helix family two component transcriptional regulator  44.05 
 
 
233 aa  161  1e-38  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
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