More than 300 homologs were found in PanDaTox collection
for query gene Francci3_2430 on replicon NC_007777
Organism: Frankia sp. CcI3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013510  Tcur_4635  acyl-CoA dehydrogenase domain protein  79.79 
 
 
386 aa  637    Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_007777  Francci3_2430  acyl-CoA dehydrogenase-like  100 
 
 
385 aa  788    Frankia sp. CcI3  Bacteria  decreased coverage  0.000440313  normal  0.478447 
 
 
-
 
NC_009921  Franean1_4054  acyl-CoA dehydrogenase domain-containing protein  78.33 
 
 
384 aa  625  1e-178  Frankia sp. EAN1pec  Bacteria  normal  normal  0.168546 
 
 
-
 
NC_009077  Mjls_4228  isovaleryl-CoA dehydrogenase  77.55 
 
 
385 aa  624  1e-177  Mycobacterium sp. JLS  Bacteria  normal  0.950044  normal  0.66405 
 
 
-
 
NC_009077  Mjls_0171  butyryl-CoA dehydrogenase  77.14 
 
 
385 aa  612  9.999999999999999e-175  Mycobacterium sp. JLS  Bacteria  normal  normal  0.260341 
 
 
-
 
NC_008146  Mmcs_0182  butyryl-CoA dehydrogenase  76.62 
 
 
385 aa  609  1e-173  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0191  butyryl-CoA dehydrogenase  76.62 
 
 
385 aa  609  1e-173  Mycobacterium sp. KMS  Bacteria  normal  0.297032  normal 
 
 
-
 
NC_013441  Gbro_4180  acyl-CoA dehydrogenase domain protein  74.15 
 
 
383 aa  598  1e-170  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_0446  butyryl-CoA dehydrogenase  74.28 
 
 
385 aa  597  1e-170  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.981915  normal 
 
 
-
 
NC_008726  Mvan_0221  butyryl-CoA dehydrogenase  75.33 
 
 
385 aa  581  1.0000000000000001e-165  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.0556 
 
 
-
 
NC_009565  TBFG_10217  acyl-CoA dehydrogenase fadE3  70.74 
 
 
373 aa  526  1e-148  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_2091  acyl-CoA dehydrogenase domain-containing protein  65 
 
 
386 aa  510  1e-143  Thermobispora bispora DSM 43833  Bacteria  normal  0.0244674  normal  0.176746 
 
 
-
 
NC_010681  Bphyt_0615  acyl-CoA dehydrogenase domain protein  52.39 
 
 
387 aa  428  1e-119  Burkholderia phytofirmans PsJN  Bacteria  normal  0.210833  normal  0.0397055 
 
 
-
 
NC_007951  Bxe_A4085  putative acyl-CoA dehydrogenase  52.28 
 
 
387 aa  427  1e-118  Burkholderia xenovorans LB400  Bacteria  normal  0.14575  normal 
 
 
-
 
NC_007908  Rfer_4169  butyryl-CoA dehydrogenase  51.58 
 
 
383 aa  421  1e-116  Rhodoferax ferrireducens T118  Bacteria  normal  0.0614852  n/a   
 
 
-
 
NC_007908  Rfer_4181  butyryl-CoA dehydrogenase  51.58 
 
 
383 aa  421  1e-116  Rhodoferax ferrireducens T118  Bacteria  normal  0.0181503  n/a   
 
 
-
 
NC_013510  Tcur_2510  acyl-CoA dehydrogenase domain protein  50.52 
 
 
397 aa  399  9.999999999999999e-111  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0195405  n/a   
 
 
-
 
NC_013739  Cwoe_4224  acyl-CoA dehydrogenase domain protein  49.62 
 
 
400 aa  393  1e-108  Conexibacter woesei DSM 14684  Bacteria  normal  0.0700017  normal  0.0824066 
 
 
-
 
NC_013595  Sros_6335  acyl-CoA dehydrogenase domain protein  51.46 
 
 
386 aa  394  1e-108  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0389315  normal  0.725662 
 
 
-
 
NC_008699  Noca_4073  acyl-CoA dehydrogenase domain-containing protein  49.73 
 
 
386 aa  385  1e-105  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_2093  acyl-CoA dehydrogenase domain-containing protein  48.3 
 
 
398 aa  379  1e-104  Thermobispora bispora DSM 43833  Bacteria  normal  0.0300334  normal  0.0497691 
 
 
-
 
NC_013441  Gbro_1523  acyl-CoA dehydrogenase domain protein  47.12 
 
 
397 aa  379  1e-104  Gordonia bronchialis DSM 43247  Bacteria  normal  0.0413288  n/a   
 
 
-
 
NC_007777  Francci3_2167  butyryl-CoA dehydrogenase  48.04 
 
 
399 aa  377  1e-103  Frankia sp. CcI3  Bacteria  normal  0.592182  normal  0.710802 
 
 
-
 
NC_013757  Gobs_1139  acyl-CoA dehydrogenase domain protein  47.52 
 
 
399 aa  372  1e-102  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_7768  acyl-CoA dehydrogenase domain protein  47.91 
 
 
397 aa  375  1e-102  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_2715  acyl-CoA dehydrogenase-like  46.61 
 
 
391 aa  370  1e-101  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.785448  n/a   
 
 
-
 
NC_008146  Mmcs_1759  acyl-CoA dehydrogenase-like protein  47.4 
 
 
397 aa  367  1e-100  Mycobacterium sp. MCS  Bacteria  normal  0.218239  n/a   
 
 
-
 
NC_008705  Mkms_1806  acyl-CoA dehydrogenase domain-containing protein  47.4 
 
 
397 aa  367  1e-100  Mycobacterium sp. KMS  Bacteria  normal  normal  0.580831 
 
 
-
 
NC_009338  Mflv_4367  butyryl-CoA dehydrogenase  46.61 
 
 
397 aa  365  1e-100  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_1740  acyl-CoA dehydrogenase domain-containing protein  47.4 
 
 
397 aa  367  1e-100  Mycobacterium sp. JLS  Bacteria  normal  0.0177648  normal 
 
 
-
 
NC_008726  Mvan_1977  butyryl-CoA dehydrogenase  47.14 
 
 
397 aa  365  1e-99  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1456  acyl-CoA dehydrogenase domain-containing protein  45.55 
 
 
398 aa  361  1e-98  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_0673  acyl-CoA dehydrogenase domain-containing protein  45.31 
 
 
400 aa  352  8e-96  Salinispora arenicola CNS-205  Bacteria  normal  0.514226  normal 
 
 
-
 
NC_009380  Strop_0727  acyl-CoA dehydrogenase domain-containing protein  45.05 
 
 
398 aa  349  4e-95  Salinispora tropica CNB-440  Bacteria  normal  normal  0.230975 
 
 
-
 
NC_009921  Franean1_4031  acyl-CoA dehydrogenase domain-containing protein  45.95 
 
 
399 aa  349  4e-95  Frankia sp. EAN1pec  Bacteria  normal  0.328111  normal  0.707323 
 
 
-
 
NC_009921  Franean1_4533  acyl-CoA dehydrogenase domain-containing protein  45.69 
 
 
398 aa  347  3e-94  Frankia sp. EAN1pec  Bacteria  normal  0.0920452  normal 
 
 
-
 
NC_013744  Htur_4358  acyl-CoA dehydrogenase domain protein  43.54 
 
 
381 aa  311  1e-83  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.0892384  n/a   
 
 
-
 
NC_009719  Plav_1613  acyl-CoA dehydrogenase domain-containing protein  45.31 
 
 
568 aa  309  4e-83  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.10785  normal 
 
 
-
 
NC_013922  Nmag_2307  acyl-CoA dehydrogenase domain protein  42.86 
 
 
381 aa  303  3.0000000000000004e-81  Natrialba magadii ATCC 43099  Archaea  normal  n/a   
 
 
-
 
NC_011894  Mnod_4511  acyl-CoA dehydrogenase domain protein  44.73 
 
 
560 aa  302  7.000000000000001e-81  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.547594  n/a   
 
 
-
 
NC_013202  Hmuk_2909  acyl-CoA dehydrogenase domain protein  44.04 
 
 
389 aa  302  8.000000000000001e-81  Halomicrobium mukohataei DSM 12286  Archaea  normal  0.214496  normal 
 
 
-
 
NC_013743  Htur_1175  acyl-CoA dehydrogenase domain protein  42.22 
 
 
381 aa  296  3e-79  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_010172  Mext_2228  acyl-CoA dehydrogenase domain-containing protein  42.93 
 
 
562 aa  296  4e-79  Methylobacterium extorquens PA1  Bacteria  normal  0.489531  normal  0.489903 
 
 
-
 
NC_010511  M446_4575  isovaleryl-CoA dehydrogenase  45.36 
 
 
560 aa  296  4e-79  Methylobacterium sp. 4-46  Bacteria  normal  0.138907  hitchhiker  0.00955586 
 
 
-
 
NC_011757  Mchl_2504  acyl-CoA dehydrogenase domain protein  42.67 
 
 
562 aa  292  7e-78  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0181987  normal 
 
 
-
 
NC_009674  Bcer98_3863  acyl-CoA dehydrogenase domain-containing protein  43.62 
 
 
376 aa  291  1e-77  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_0310  acyl-CoA dehydrogenase domain-containing protein  44.15 
 
 
563 aa  291  2e-77  Xanthobacter autotrophicus Py2  Bacteria  normal  0.0589554  normal  0.08283 
 
 
-
 
NC_008044  TM1040_2444  isovaleryl-CoA dehydrogenase  42.6 
 
 
567 aa  290  4e-77  Ruegeria sp. TM1040  Bacteria  normal  0.590306  normal  0.477736 
 
 
-
 
NC_008687  Pden_2840  Acyl-CoA dehydrogenase  43.57 
 
 
551 aa  288  9e-77  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_012793  GWCH70_3342  acyl-CoA dehydrogenase domain protein  42.29 
 
 
379 aa  287  2e-76  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A5465  acyl-CoA dehydrogenase  42.29 
 
 
381 aa  287  2e-76  Bacillus cereus B4264  Bacteria  hitchhiker  0.000680329  n/a   
 
 
-
 
NC_010725  Mpop_2186  acyl-CoA dehydrogenase domain protein  42.31 
 
 
562 aa  287  2.9999999999999996e-76  Methylobacterium populi BJ001  Bacteria  normal  0.0552217  normal 
 
 
-
 
NC_003909  BCE_5473  acyl-CoA dehydrogenase  42.29 
 
 
376 aa  287  2.9999999999999996e-76  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_013744  Htur_4372  acyl-CoA dehydrogenase domain protein  41.6 
 
 
374 aa  286  2.9999999999999996e-76  Haloterrigena turkmenica DSM 5511  Archaea  normal  0.367452  n/a   
 
 
-
 
NC_010505  Mrad2831_4351  acyl-CoA dehydrogenase domain-containing protein  42.78 
 
 
560 aa  287  2.9999999999999996e-76  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.05445  normal 
 
 
-
 
NC_005945  BAS5191  acyl-CoA dehydrogenase  42.29 
 
 
376 aa  286  4e-76  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_5587  acyl-CoA dehydrogenase  42.29 
 
 
376 aa  286  4e-76  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A3064  isovaleryl-CoA dehydrogenase  43.86 
 
 
563 aa  286  4e-76  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.326905  n/a   
 
 
-
 
NC_011658  BCAH187_A5520  acyl-CoA dehydrogenase  42.29 
 
 
381 aa  286  4e-76  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_5435  acyl-CoA dehydrogenase  42.29 
 
 
376 aa  286  5e-76  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.000000000529924 
 
 
-
 
NC_005957  BT9727_5026  short-chain acyl-CoA dehydrogenase; butyryl-CoA dehydrogenase  42.29 
 
 
376 aa  286  5e-76  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_013202  Hmuk_2082  acyl-CoA dehydrogenase domain protein  40.27 
 
 
376 aa  286  5e-76  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal 
 
 
-
 
NC_009512  Pput_3522  acyl-CoA dehydrogenase domain-containing protein  43.05 
 
 
375 aa  286  5e-76  Pseudomonas putida F1  Bacteria  normal  normal  0.0559083 
 
 
-
 
NC_011772  BCG9842_B5487  acyl-CoA dehydrogenase  42.29 
 
 
381 aa  286  5.999999999999999e-76  Bacillus cereus G9842  Bacteria  normal  0.0302943  hitchhiker  1.44799e-22 
 
 
-
 
NC_009049  Rsph17029_0312  isovaleryl-CoA dehydrogenase  42.56 
 
 
555 aa  285  7e-76  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_3455  acyl-CoA dehydrogenase domain-containing protein  43.24 
 
 
375 aa  284  1.0000000000000001e-75  Pseudomonas putida W619  Bacteria  normal  normal  0.129524 
 
 
-
 
NC_006274  BCZK5042  short-chain acyl-CoA dehydrogenase; butyryl-CoA dehydrogenase  42.02 
 
 
376 aa  284  2.0000000000000002e-75  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_0530  Acyl-CoA dehydrogenase  41.34 
 
 
560 aa  284  2.0000000000000002e-75  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_013411  GYMC61_1052  acyl-CoA dehydrogenase domain protein  42.71 
 
 
386 aa  284  2.0000000000000002e-75  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_002947  PP_2216  acyl-CoA dehydrogenase domain-containing protein  42.78 
 
 
375 aa  283  4.0000000000000003e-75  Pseudomonas putida KT2440  Bacteria  normal  0.585123  normal 
 
 
-
 
NC_010184  BcerKBAB4_5140  acyl-CoA dehydrogenase domain-containing protein  42.02 
 
 
376 aa  283  4.0000000000000003e-75  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_013946  Mrub_0264  acyl-CoA dehydrogenase domain-containing protein  42.26 
 
 
394 aa  282  8.000000000000001e-75  Meiothermus ruber DSM 1279  Bacteria  normal  0.0644181  normal  0.99067 
 
 
-
 
NC_009428  Rsph17025_2567  acyl-CoA dehydrogenase domain-containing protein  42.01 
 
 
555 aa  281  9e-75  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal  0.349993 
 
 
-
 
NC_010322  PputGB1_1842  acyl-CoA dehydrogenase domain-containing protein  42.97 
 
 
375 aa  281  1e-74  Pseudomonas putida GB-1  Bacteria  normal  0.0292697  normal  0.208883 
 
 
-
 
NC_013743  Htur_2576  acyl-CoA dehydrogenase domain protein  42.74 
 
 
378 aa  281  1e-74  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_011004  Rpal_2548  acyl-CoA dehydrogenase domain protein  44.86 
 
 
375 aa  281  2e-74  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.314153  n/a   
 
 
-
 
NC_007493  RSP_1679  acyl-CoA dehydrogenase  42.05 
 
 
548 aa  281  2e-74  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.0534807  n/a   
 
 
-
 
NC_012793  GWCH70_3341  acyl-CoA dehydrogenase domain protein  42.02 
 
 
379 aa  280  3e-74  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_4146  acyl-CoA dehydrogenase domain-containing protein  44.15 
 
 
394 aa  279  5e-74  Roseiflexus sp. RS-1  Bacteria  normal  0.954368  normal 
 
 
-
 
NC_009675  Anae109_2163  acyl-CoA dehydrogenase domain-containing protein  43.16 
 
 
389 aa  278  1e-73  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.820192  normal  0.287496 
 
 
-
 
NC_011368  Rleg2_4384  acyl-CoA dehydrogenase domain protein  43.27 
 
 
375 aa  278  1e-73  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.17615  normal 
 
 
-
 
NC_009427  Saro_3795  acyl-CoA dehydrogenase domain-containing protein  44.04 
 
 
528 aa  278  1e-73  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_4427  Butyryl-CoA dehydrogenase  39.69 
 
 
388 aa  277  2e-73  Cupriavidus metallidurans CH34  Bacteria  decreased coverage  0.0000160956  normal  0.322206 
 
 
-
 
NC_012029  Hlac_1205  acyl-CoA dehydrogenase domain protein  43.54 
 
 
381 aa  276  3e-73  Halorubrum lacusprofundi ATCC 49239  Archaea  unclonable  0.0000000395395  hitchhiker  0.00000719291 
 
 
-
 
NC_012854  Rleg_6504  acyl-CoA dehydrogenase domain protein  42.33 
 
 
375 aa  276  4e-73  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.285028  normal  0.547313 
 
 
-
 
NC_009656  PSPA7_3642  putative acyl-CoA dehydrogenase  42.74 
 
 
384 aa  276  4e-73  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_0583  acyl-CoA dehydrogenase domain-containing protein  43.62 
 
 
379 aa  276  4e-73  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.394739 
 
 
-
 
NC_007348  Reut_B3825  butyryl-CoA dehydrogenase  39.43 
 
 
400 aa  276  6e-73  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008786  Veis_1583  acyl-CoA dehydrogenase domain-containing protein  41.54 
 
 
412 aa  275  7e-73  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.266068  hitchhiker  0.00354782 
 
 
-
 
NC_009656  PSPA7_2684  putative acyl-CoA dehydrogenase  42.78 
 
 
375 aa  275  8e-73  Pseudomonas aeruginosa PA7  Bacteria  normal  0.126402  n/a   
 
 
-
 
NC_010338  Caul_1059  acyl-CoA dehydrogenase domain-containing protein  41.78 
 
 
569 aa  275  9e-73  Caulobacter sp. K31  Bacteria  normal  normal  0.773265 
 
 
-
 
NC_007204  Psyc_1172  acyl-CoA dehydrogenase  41.4 
 
 
384 aa  275  1.0000000000000001e-72  Psychrobacter arcticus 273-4  Bacteria  normal  normal  0.336122 
 
 
-
 
NC_010322  PputGB1_2436  acyl-CoA dehydrogenase domain-containing protein  42.44 
 
 
383 aa  275  1.0000000000000001e-72  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_0204  acyl-CoA dehydrogenase  41.39 
 
 
564 aa  275  1.0000000000000001e-72  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.0731517  normal  0.952971 
 
 
-
 
NC_007958  RPD_3106  acyl-CoA dehydrogenase-like  44.32 
 
 
375 aa  275  1.0000000000000001e-72  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0271451 
 
 
-
 
NC_007969  Pcryo_1233  acyl-CoA dehydrogenase-like  41.4 
 
 
384 aa  275  1.0000000000000001e-72  Psychrobacter cryohalolentis K5  Bacteria  normal  0.831269  normal  0.440096 
 
 
-
 
NC_011891  A2cp1_2299  acyl-CoA dehydrogenase domain protein  44.56 
 
 
379 aa  275  1.0000000000000001e-72  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.174362  n/a   
 
 
-
 
NC_008463  PA14_43420  putative acyl-CoA dehydrogenase  42.47 
 
 
384 aa  275  1.0000000000000001e-72  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0779209  normal 
 
 
-
 
NC_011831  Cagg_0397  acyl-CoA dehydrogenase domain protein  43.92 
 
 
379 aa  275  1.0000000000000001e-72  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal  0.362138 
 
 
-
 
NC_013202  Hmuk_3108  acyl-CoA dehydrogenase domain protein  41.01 
 
 
380 aa  273  3e-72  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal 
 
 
-
 
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