More than 300 homologs were found in PanDaTox collection
for query gene Fjoh_2880 on replicon NC_009441
Organism: Flavobacterium johnsoniae UW101



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009441  Fjoh_2880  two component transcriptional regulator  100 
 
 
220 aa  442  1e-123  Flavobacterium johnsoniae UW101  Bacteria  normal  0.344114  n/a   
 
 
-
 
NC_007514  Cag_0440  two component transcriptional regulator  45.87 
 
 
225 aa  219  3e-56  Chlorobium chlorochromatii CaD3  Bacteria  normal  0.747409  n/a   
 
 
-
 
NC_007512  Plut_1212  two component transcriptional regulator  46.79 
 
 
232 aa  219  3.9999999999999997e-56  Chlorobium luteolum DSM 273  Bacteria  normal  0.0899901  normal  0.616229 
 
 
-
 
NC_010803  Clim_1291  two component transcriptional regulator, winged helix family  46.79 
 
 
222 aa  217  8.999999999999998e-56  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_0994  two component transcriptional regulator, winged helix family  47.06 
 
 
227 aa  216  2e-55  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.337893  n/a   
 
 
-
 
NC_008639  Cpha266_1205  two component transcriptional regulator  46.79 
 
 
222 aa  214  9.999999999999999e-55  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_010831  Cphamn1_0990  two component transcriptional regulator, winged helix family  43.12 
 
 
222 aa  212  2.9999999999999995e-54  Chlorobium phaeobacteroides BS1  Bacteria  hitchhiker  0.000957791  decreased coverage  0.0000715536 
 
 
-
 
NC_009483  Gura_1986  two component heavy metal response transcriptional regulator  43.38 
 
 
223 aa  201  6e-51  Geobacter uraniireducens Rf4  Bacteria  normal  0.0566795  n/a   
 
 
-
 
NC_011146  Gbem_0243  two component transcriptional regulator, winged helix family  43.38 
 
 
224 aa  195  4.0000000000000005e-49  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.000226454  n/a   
 
 
-
 
NC_012918  GM21_0227  two component transcriptional regulator, winged helix family  42.92 
 
 
224 aa  193  2e-48  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007498  Pcar_3081  two component signal transduction response regulator  41.55 
 
 
223 aa  192  3e-48  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_4293  two component transcriptional regulator  41.55 
 
 
224 aa  192  3e-48  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000934276  n/a   
 
 
-
 
NC_014248  Aazo_0389  winged helix family two component transcriptional regulator  42.79 
 
 
224 aa  191  8e-48  'Nostoc azollae' 0708  Bacteria  normal  0.667669  n/a   
 
 
-
 
NC_007604  Synpcc7942_1873  two component transcriptional regulator  40.27 
 
 
226 aa  190  2e-47  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_1948  response regulator receiver domain-containing protein  41.82 
 
 
226 aa  188  7e-47  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.679676 
 
 
-
 
NC_011729  PCC7424_2242  two component transcriptional regulator, winged helix family  44.75 
 
 
224 aa  187  1e-46  Cyanothece sp. PCC 7424  Bacteria  n/a    normal  0.415885 
 
 
-
 
NC_011830  Dhaf_2231  two component transcriptional regulator, winged helix family  42.53 
 
 
226 aa  187  2e-46  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_013411  GYMC61_0523  two component transcriptional regulator, winged helix family  42.47 
 
 
224 aa  186  3e-46  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007413  Ava_0615  two component transcriptional regulator  41.47 
 
 
228 aa  185  5e-46  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0841359  normal  0.719107 
 
 
-
 
NC_010001  Cphy_0015  two component transcriptional regulator  41.96 
 
 
228 aa  184  8e-46  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_009511  Swit_4516  two component transcriptional regulator  40.91 
 
 
225 aa  183  1.0000000000000001e-45  Sphingomonas wittichii RW1  Bacteria  normal  0.158523  normal 
 
 
-
 
NC_009467  Acry_3106  two component heavy metal response transcriptional regulator  40 
 
 
225 aa  184  1.0000000000000001e-45  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0280  two component transcriptional regulator, winged helix family  39.64 
 
 
225 aa  184  1.0000000000000001e-45  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_011884  Cyan7425_3411  two component transcriptional regulator, winged helix family  40.55 
 
 
224 aa  183  1.0000000000000001e-45  Cyanothece sp. PCC 7425  Bacteria  normal  0.591115  normal 
 
 
-
 
NC_012849  Rpic12D_5335  two component heavy metal response transcriptional regulator, winged helix family  37.73 
 
 
228 aa  183  2.0000000000000003e-45  Ralstonia pickettii 12D  Bacteria  normal  0.733276  normal  0.970872 
 
 
-
 
NC_010682  Rpic_1718  two component heavy metal response transcriptional regulator, winged helix family  37.73 
 
 
228 aa  183  2.0000000000000003e-45  Ralstonia pickettii 12J  Bacteria  normal  0.348336  normal 
 
 
-
 
NC_011992  Dtpsy_2215  two component heavy metal response transcriptional regulator, winged helix family  40.36 
 
 
228 aa  182  3e-45  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1208  two component heavy metal response transcriptional regulator, winged helix family  41.1 
 
 
226 aa  182  4.0000000000000006e-45  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A1629  two-component response regulator  37.22 
 
 
228 aa  182  4.0000000000000006e-45  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.128663 
 
 
-
 
NC_010676  Bphyt_5224  two component heavy metal response transcriptional regulator, winged helix family  40.64 
 
 
225 aa  182  5.0000000000000004e-45  Burkholderia phytofirmans PsJN  Bacteria  normal  0.57611  normal 
 
 
-
 
NC_007517  Gmet_3383  two component transcriptional regulator  40.18 
 
 
224 aa  182  5.0000000000000004e-45  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_2762  two component transcriptional regulator, winged helix family  41.63 
 
 
225 aa  181  5.0000000000000004e-45  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU0451  DNA-binding response regulator  39.27 
 
 
224 aa  181  7e-45  Geobacter sulfurreducens PCA  Bacteria  normal  0.313098  n/a   
 
 
-
 
NC_010002  Daci_1091  two component heavy metal response transcriptional regulator  37.05 
 
 
232 aa  181  7e-45  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_3258  two component heavy metal response transcriptional regulator  41.1 
 
 
238 aa  181  8.000000000000001e-45  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00206307  normal  0.0675777 
 
 
-
 
NC_010682  Rpic_1780  two component heavy metal response transcriptional regulator, winged helix family  37.73 
 
 
228 aa  181  1e-44  Ralstonia pickettii 12J  Bacteria  normal  0.817023  normal  0.826624 
 
 
-
 
NC_008527  LACR_1090  DNA-binding response regulator  40.36 
 
 
228 aa  180  1e-44  Lactococcus lactis subsp. cremoris SK11  Bacteria  decreased coverage  0.00019826  n/a   
 
 
-
 
NC_011662  Tmz1t_3985  two component heavy metal response transcriptional regulator, winged helix family  42.01 
 
 
226 aa  180  2e-44  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007644  Moth_1478  two component transcriptional regulator  40.45 
 
 
240 aa  180  2e-44  Moorella thermoacetica ATCC 39073  Bacteria  hitchhiker  0.0000111909  normal 
 
 
-
 
NC_010623  Bphy_3962  two component heavy metal response transcriptional regulator  40.18 
 
 
225 aa  180  2e-44  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_4284  two component transcriptional regulator, winged helix family  41.74 
 
 
227 aa  180  2e-44  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_009767  Rcas_2487  two component transcriptional regulator  40.83 
 
 
224 aa  179  2.9999999999999997e-44  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.431556  normal 
 
 
-
 
NC_010184  BcerKBAB4_2492  two component transcriptional regulator  41.18 
 
 
224 aa  179  2.9999999999999997e-44  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.22217  n/a   
 
 
-
 
NC_007952  Bxe_B1389  two component heavy metal response transcriptional regulator  39.73 
 
 
225 aa  179  2.9999999999999997e-44  Burkholderia xenovorans LB400  Bacteria  normal  0.717226  normal  0.091392 
 
 
-
 
NC_007952  Bxe_B1748a  hypothetical protein  39.64 
 
 
223 aa  179  2.9999999999999997e-44  Burkholderia xenovorans LB400  Bacteria  normal  0.0697031  normal  0.305387 
 
 
-
 
NC_011662  Tmz1t_4055  two component heavy metal response transcriptional regulator, winged helix family  40.64 
 
 
226 aa  179  4e-44  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_011138  MADE_03339  Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain  39.73 
 
 
226 aa  179  4e-44  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_2675  DNA-binding response regulator  41.18 
 
 
224 aa  178  4.999999999999999e-44  Bacillus cereus ATCC 10987  Bacteria  normal  0.0180828  n/a   
 
 
-
 
NC_013525  Tter_1435  two component transcriptional regulator, winged helix family  39.73 
 
 
233 aa  178  5.999999999999999e-44  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_007298  Daro_2259  two component heavy metal response transcriptional regulator  40.91 
 
 
225 aa  178  7e-44  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A2673  DNA-binding response regulator  41.18 
 
 
224 aa  177  7e-44  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_2290  two component transcriptional regulator  39.45 
 
 
224 aa  177  1e-43  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A1815  two component heavy metal response transcriptional regulator  39.27 
 
 
224 aa  177  1e-43  Ralstonia eutropha JMP134  Bacteria  normal  0.275759  n/a   
 
 
-
 
NC_008699  Noca_1613  response regulator receiver  38.99 
 
 
225 aa  177  1e-43  Nocardioides sp. JS614  Bacteria  normal  0.97266  n/a   
 
 
-
 
NC_008347  Mmar10_0943  two component transcriptional regulator  37.44 
 
 
223 aa  177  1e-43  Maricaulis maris MCS10  Bacteria  normal  0.0172896  normal  0.994999 
 
 
-
 
NC_009438  Sputcn32_0258  DNA-binding transcriptional activator CusR  39.55 
 
 
226 aa  176  2e-43  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_1727  two component transcriptional regulator  36.82 
 
 
228 aa  176  2e-43  Opitutus terrae PB90-1  Bacteria  normal  0.284746  normal 
 
 
-
 
NC_009719  Plav_0944  two component transcriptional regulator  37.9 
 
 
225 aa  176  2e-43  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.091613  normal 
 
 
-
 
NC_010814  Glov_0998  two component transcriptional regulator, winged helix family  40.37 
 
 
223 aa  176  3e-43  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_5873  two component heavy metal response transcriptional regulator, winged helix family  39.73 
 
 
228 aa  176  3e-43  Burkholderia phytofirmans PsJN  Bacteria  normal  0.247228  normal 
 
 
-
 
NC_003296  RSp0655  two component response regulator transcription regulator protein  37.67 
 
 
228 aa  176  3e-43  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.81937 
 
 
-
 
NC_010557  BamMC406_5744  two component heavy metal response transcriptional regulator  40.18 
 
 
225 aa  176  3e-43  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0360294  normal  0.749662 
 
 
-
 
NC_007492  Pfl01_3855  two component heavy metal response transcriptional regulator  41.96 
 
 
226 aa  176  3e-43  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal  0.845216 
 
 
-
 
NC_007952  Bxe_B2069  two component heavy metal response transcriptional regulator  39.73 
 
 
228 aa  176  3e-43  Burkholderia xenovorans LB400  Bacteria  normal  0.0102482  normal 
 
 
-
 
NC_010676  Bphyt_4933  two component heavy metal response transcriptional regulator, winged helix family  39.19 
 
 
223 aa  176  3e-43  Burkholderia phytofirmans PsJN  Bacteria  normal  0.461594  normal  0.344735 
 
 
-
 
NC_008392  Bamb_5988  two component heavy metal response transcriptional regulator  40.18 
 
 
225 aa  176  3e-43  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_008573  Shewana3_4296  DNA-binding transcriptional activator CusR  39.55 
 
 
226 aa  176  3e-43  Shewanella sp. ANA-3  Bacteria  decreased coverage  0.0000252174  normal 
 
 
-
 
NC_013730  Slin_0732  two component transcriptional regulator, winged helix family  40 
 
 
231 aa  175  4e-43  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_010625  Bphy_6519  two component heavy metal response transcriptional regulator  40.18 
 
 
228 aa  175  4e-43  Burkholderia phymatum STM815  Bacteria  normal  normal  0.0435386 
 
 
-
 
NC_008554  Sfum_2007  two component transcriptional regulator  39.27 
 
 
223 aa  175  4e-43  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_011313  VSAL_II0197  transcriptional activator protein, response regulator  40.99 
 
 
227 aa  175  4e-43  Aliivibrio salmonicida LFI1238  Bacteria  hitchhiker  0.0086442  n/a   
 
 
-
 
NC_010512  Bcenmc03_6987  two component heavy metal response transcriptional regulator  40.18 
 
 
225 aa  175  5e-43  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.67799  normal  0.586494 
 
 
-
 
NC_013947  Snas_2104  two component transcriptional regulator, winged helix family  36.7 
 
 
225 aa  175  5e-43  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.302064  normal  0.805943 
 
 
-
 
NC_008060  Bcen_1505  two component heavy metal response transcriptional regulator  40.18 
 
 
225 aa  175  5e-43  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.228186  n/a   
 
 
-
 
NC_008544  Bcen2424_6324  two component heavy metal response transcriptional regulator  40.18 
 
 
225 aa  175  5e-43  Burkholderia cenocepacia HI2424  Bacteria  normal  0.313253  normal 
 
 
-
 
NC_012918  GM21_3720  two component heavy metal response transcriptional regulator, winged helix family  38.74 
 
 
224 aa  175  6e-43  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008527  LACR_0898  DNA-binding response regulator  39.82 
 
 
234 aa  175  6e-43  Lactococcus lactis subsp. cremoris SK11  Bacteria  normal  n/a   
 
 
-
 
NC_004310  BR0612  DNA-binding response regulator  37.27 
 
 
235 aa  174  7e-43  Brucella suis 1330  Bacteria  normal  0.688885  n/a   
 
 
-
 
NC_009656  PSPA7_2348  putative two-component response regulator  39.09 
 
 
228 aa  174  7e-43  Pseudomonas aeruginosa PA7  Bacteria  normal  0.804247  n/a   
 
 
-
 
NC_009505  BOV_0611  DNA-binding response regulator  37.27 
 
 
235 aa  174  7e-43  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_2666  two component transcriptional regulator  36.82 
 
 
255 aa  174  8e-43  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.128945  n/a   
 
 
-
 
NC_013037  Dfer_0274  two component transcriptional regulator, winged helix family  38.57 
 
 
232 aa  174  9e-43  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.701823  normal  0.83989 
 
 
-
 
NC_013124  Afer_0703  two component transcriptional regulator, winged helix family  39.45 
 
 
236 aa  174  9e-43  Acidimicrobium ferrooxidans DSM 10331  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_0638  two component transcriptional regulator  38.57 
 
 
233 aa  174  9e-43  Sinorhizobium medicae WSM419  Bacteria  normal  0.403787  normal  0.96994 
 
 
-
 
CP001509  ECD_00532  DNA-binding response regulator in two-component regulatory system with CusS  39.09 
 
 
227 aa  173  9.999999999999999e-43  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_3400  two component transcriptional regulator  39.37 
 
 
224 aa  174  9.999999999999999e-43  Flavobacterium johnsoniae UW101  Bacteria  normal  0.105495  n/a   
 
 
-
 
NC_004578  PSPTO_3603  DNA-binding heavy metal response regulator  39.55 
 
 
229 aa  174  9.999999999999999e-43  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.203952  n/a   
 
 
-
 
NC_010468  EcolC_3412  two component heavy metal response transcriptional regulator  40.83 
 
 
226 aa  174  9.999999999999999e-43  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A2490  heavy metal response regulator  37.73 
 
 
228 aa  174  9.999999999999999e-43  Ralstonia eutropha JMP134  Bacteria  normal  0.289616  n/a   
 
 
-
 
NC_012892  B21_00521  hypothetical protein  39.09 
 
 
227 aa  173  9.999999999999999e-43  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_1442  two component transcriptional regulator  37.67 
 
 
230 aa  174  9.999999999999999e-43  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_3615  two component heavy metal response transcriptional regulator, winged helix family  37.84 
 
 
224 aa  174  9.999999999999999e-43  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0130  two component transcriptional regulator, winged helix family  40.45 
 
 
224 aa  174  9.999999999999999e-43  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  hitchhiker  0.00147609  n/a   
 
 
-
 
NC_013730  Slin_2929  two component transcriptional regulator, winged helix family  38.29 
 
 
230 aa  174  9.999999999999999e-43  Spirosoma linguale DSM 74  Bacteria  normal  0.0551332  normal 
 
 
-
 
NC_009801  EcE24377A_0589  DNA-binding transcriptional activator CusR  39.09 
 
 
227 aa  173  9.999999999999999e-43  Escherichia coli E24377A  Bacteria  normal  0.180273  n/a   
 
 
-
 
NC_008391  Bamb_5186  two component heavy metal response transcriptional regulator  37.84 
 
 
223 aa  173  9.999999999999999e-43  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_010468  EcolC_3075  DNA-binding transcriptional activator CusR  39.09 
 
 
227 aa  173  1.9999999999999998e-42  Escherichia coli ATCC 8739  Bacteria  normal  0.204173  normal 
 
 
-
 
NC_009632  SaurJH1_1505  response regulator receiver  42.13 
 
 
219 aa  173  1.9999999999999998e-42  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.404603  n/a   
 
 
-
 
NC_010468  EcolC_3426  DNA-binding transcriptional activator CusR  38.64 
 
 
226 aa  173  1.9999999999999998e-42  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_1174  two component heavy metal response transcriptional regulator  37.73 
 
 
224 aa  173  1.9999999999999998e-42  Pseudomonas mendocina ymp  Bacteria  normal  0.216853  normal 
 
 
-
 
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