58 homologs were found in PanDaTox collection
for query gene EcolC_2256 on replicon NC_010468
Organism: Escherichia coli ATCC 8739



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
CP001637  EcDH1_2246  transcriptional regulator, PaaX family  99.05 
 
 
316 aa  637    Escherichia coli DH1  Bacteria  normal  0.218129  n/a   
 
 
-
 
NC_009801  EcE24377A_1585  phenylacetic acid degradation operon negative regulatory protein PaaX  98.42 
 
 
316 aa  634    Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A1486  phenylacetic acid degradation operon negative regulatory protein PaaX  100 
 
 
316 aa  643    Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_2256  PaaX family transcriptional regulator  100 
 
 
316 aa  643    Escherichia coli ATCC 8739  Bacteria  normal  0.203735  normal 
 
 
-
 
NC_009832  Spro_3083  PaaX family transcriptional regulator  60.4 
 
 
312 aa  369  1e-101  Serratia proteamaculans 568  Bacteria  normal  normal  0.415086 
 
 
-
 
NC_009654  Mmwyl1_3103  PaaX family transcriptional regulator  41.97 
 
 
307 aa  264  2e-69  Marinomonas sp. MWYL1  Bacteria  decreased coverage  0.000000661945  decreased coverage  0.0000397547 
 
 
-
 
NC_010501  PputW619_2623  PaaX family transcriptional regulator  43.61 
 
 
334 aa  261  1e-68  Pseudomonas putida W619  Bacteria  normal  0.312733  normal  0.0873289 
 
 
-
 
NC_002947  PP_3286  PaaX family transcriptional regulator  43.09 
 
 
307 aa  256  3e-67  Pseudomonas putida KT2440  Bacteria  normal  0.17765  normal 
 
 
-
 
NC_010322  PputGB1_2610  PaaX family transcriptional regulator  42.43 
 
 
334 aa  254  1.0000000000000001e-66  Pseudomonas putida GB-1  Bacteria  normal  0.218497  normal  0.0704814 
 
 
-
 
NC_009512  Pput_2473  PaaX family transcriptional regulator  42.43 
 
 
334 aa  252  6e-66  Pseudomonas putida F1  Bacteria  normal  0.303711  normal 
 
 
-
 
NC_007958  RPD_1521  phenylacetic acid degradation operon negative regulatory protein PaaX  38.44 
 
 
312 aa  210  2e-53  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_0196  transcriptional regulator, PaaX family  36.61 
 
 
319 aa  203  3e-51  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B3734  phenylacetic acid degradation operon negative regulatory protein PaaX  36.59 
 
 
307 aa  196  4.0000000000000005e-49  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_008709  Ping_0661  PaaX domain-containing protein, C- domain  36.36 
 
 
285 aa  194  1e-48  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_007298  Daro_0386  phenylacetic acid degradation operon negative regulatory protein PaaX  37.66 
 
 
352 aa  182  6e-45  Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.0000000187716  normal  0.0170462 
 
 
-
 
NC_010506  Swoo_0216  PaaX family transcriptional regulator  33.68 
 
 
311 aa  174  1.9999999999999998e-42  Shewanella woodyi ATCC 51908  Bacteria  normal  normal  0.0165647 
 
 
-
 
NC_013411  GYMC61_2859  transcriptional regulator, PaaX family  34.96 
 
 
285 aa  164  3e-39  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011662  Tmz1t_1514  transcriptional regulator, PaaX family  35.96 
 
 
316 aa  161  1e-38  Thauera sp. MZ1T  Bacteria  normal  0.139923  n/a   
 
 
-
 
NC_009720  Xaut_0895  PaaX family transcriptional regulator  35.55 
 
 
305 aa  159  4e-38  Xanthobacter autotrophicus Py2  Bacteria  normal  0.947925  normal 
 
 
-
 
NC_009485  BBta_2864  phenylacetic acid degradation operon negative regulatory protein paaX  38.01 
 
 
293 aa  156  5.0000000000000005e-37  Bradyrhizobium sp. BTAi1  Bacteria  decreased coverage  0.00499823  normal  0.0484276 
 
 
-
 
NC_007925  RPC_0692  phenylacetic acid degradation operon negative regulatory protein PaaX  35.42 
 
 
287 aa  145  7.0000000000000006e-34  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.717402  normal 
 
 
-
 
NC_011894  Mnod_7200  transcriptional regulator, PaaX family  35.19 
 
 
292 aa  143  5e-33  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.803046  n/a   
 
 
-
 
NC_013411  GYMC61_2835  transcriptional regulator, PaaX family  29.84 
 
 
285 aa  130  4.0000000000000003e-29  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011894  Mnod_3357  transcriptional regulator, PaaX family  30.85 
 
 
301 aa  123  3e-27  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4146  PaaX family transcriptional regulator  30.61 
 
 
305 aa  112  1.0000000000000001e-23  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.85173 
 
 
-
 
NC_009484  Acry_0094  PaaX family transcriptional regulator  33.67 
 
 
289 aa  110  3e-23  Acidiphilium cryptum JF-5  Bacteria  normal  0.339453  n/a   
 
 
-
 
NC_013947  Snas_0703  transcriptional regulator, PaaX family  32.45 
 
 
259 aa  109  8.000000000000001e-23  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_2009  transcriptional regulator, PaaX family  30.65 
 
 
281 aa  106  6e-22  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.429433  normal 
 
 
-
 
NC_009380  Strop_0708  PaaX family transcriptional regulator  30.53 
 
 
272 aa  104  2e-21  Salinispora tropica CNB-440  Bacteria  normal  0.719013  normal  0.640912 
 
 
-
 
NC_009953  Sare_0655  PaaX family transcriptional regulator  30.15 
 
 
272 aa  103  3e-21  Salinispora arenicola CNS-205  Bacteria  normal  0.0748596  hitchhiker  0.00291671 
 
 
-
 
NC_013093  Amir_0787  transcriptional regulator, PaaX family  30.92 
 
 
268 aa  102  1e-20  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008688  Pden_4812  PaaX domain-containing protein  29.82 
 
 
284 aa  99.8  6e-20  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.33483 
 
 
-
 
NC_014212  Mesil_0980  transcriptional regulator, PaaX family  30 
 
 
259 aa  97.8  2e-19  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.148761 
 
 
-
 
NC_013946  Mrub_2629  PaaX family transcriptional regulator  28.74 
 
 
259 aa  89.4  8e-17  Meiothermus ruber DSM 1279  Bacteria  normal  0.495501  normal 
 
 
-
 
NC_008699  Noca_1206  PaaX domain-containing protein, C- domain  28.74 
 
 
258 aa  89  1e-16  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_2150  transcriptional regulator, PaaX family  28.63 
 
 
289 aa  86.7  5e-16  Conexibacter woesei DSM 14684  Bacteria  normal  0.933136  normal  0.276366 
 
 
-
 
NC_013159  Svir_19070  phenylacetic acid-responsive transcriptional repressor  27.7 
 
 
292 aa  85.9  8e-16  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.0202563  normal 
 
 
-
 
NC_013235  Namu_0588  transcriptional regulator, PaaX family  28.73 
 
 
276 aa  85.5  0.000000000000001  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_6455  transcriptional regulator, PaaX family  25.81 
 
 
260 aa  85.1  0.000000000000001  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_8420  putative transcriptional regulator, PaaX family  28.99 
 
 
260 aa  85.5  0.000000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.289328  normal 
 
 
-
 
NC_009921  Franean1_1685  PaaX family transcriptional regulator  27.17 
 
 
333 aa  83.2  0.000000000000005  Frankia sp. EAN1pec  Bacteria  normal  0.0710641  normal  0.260669 
 
 
-
 
NC_014151  Cfla_0294  transcriptional regulator, PaaX family  28.2 
 
 
318 aa  81.3  0.00000000000002  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0429653  hitchhiker  0.0000864342 
 
 
-
 
NC_014165  Tbis_1609  PaaX family transcriptional regulator  27.69 
 
 
258 aa  78.6  0.0000000000001  Thermobispora bispora DSM 43833  Bacteria  normal  normal 
 
 
-
 
NC_009956  Dshi_3828  PaaX family transcriptional regulator  28.46 
 
 
264 aa  78.2  0.0000000000002  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.648927  normal 
 
 
-
 
NC_013131  Caci_4899  transcriptional regulator, PaaX family  27.06 
 
 
276 aa  65.9  0.0000000009  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.425131  normal 
 
 
-
 
NC_013131  Caci_5523  transcriptional regulator, PaaX family  26.44 
 
 
267 aa  65.1  0.000000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.543092 
 
 
-
 
NC_008044  TM1040_0436  PaaX-like  24.72 
 
 
301 aa  61.6  0.00000001  Ruegeria sp. TM1040  Bacteria  normal  normal  0.581976 
 
 
-
 
NC_014151  Cfla_2025  transcriptional regulator, PaaX family  26.23 
 
 
306 aa  56.6  0.0000006  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_0309  transcriptional regulator, PaaX family  25.3 
 
 
302 aa  56.2  0.0000007  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_0659  PaaX-like  32.97 
 
 
265 aa  50.8  0.00003  Jannaschia sp. CCS1  Bacteria  normal  0.702789  normal 
 
 
-
 
NC_008146  Mmcs_0977  PaaX-like protein  29.41 
 
 
243 aa  47.4  0.0004  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_1005  PaaX domain-containing protein, C- domain  29.41 
 
 
243 aa  47.4  0.0004  Mycobacterium sp. JLS  Bacteria  normal  normal  0.457167 
 
 
-
 
NC_008705  Mkms_0995  PaaX domain-containing protein, C- domain  29.41 
 
 
243 aa  47.4  0.0004  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_5085  PaaX domain-containing protein, C- domain  28.31 
 
 
244 aa  44.3  0.003  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.706044 
 
 
-
 
NC_009565  TBFG_10688  hypothetical protein  29.03 
 
 
240 aa  43.5  0.004  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_0915  PaaX domain-containing protein  28.37 
 
 
275 aa  43.9  0.004  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_1271  PaaX domain-containing protein, C- domain  26.48 
 
 
237 aa  43.5  0.005  Mycobacterium vanbaalenii PYR-1  Bacteria  decreased coverage  0.00141132  normal 
 
 
-
 
NC_014151  Cfla_0289  transcriptional regulator, PaaX family  26.82 
 
 
280 aa  42.4  0.01  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.010887  hitchhiker  0.0000784974 
 
 
-
 
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