9 homologs were found in PanDaTox collection
for query gene EcSMS35_A0028 on replicon NC_010488
Organism: Escherichia coli SMS-3-5



Page 1 of 1    << first  < prev  1  next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010488  EcSMS35_A0028  conjugal transfer protein TrbI  100 
 
 
128 aa  263  8e-70  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_009425  Ent638_4291  hypothetical protein  46.74 
 
 
138 aa  90.9  6e-18  Enterobacter sp. 638  Bacteria  normal  0.697334  normal 
 
 
-
 
NC_011311  VSAL_p840_09  conjugative transfer protein TrbI  34.58 
 
 
115 aa  59.7  0.00000001  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_011665  Sbal223_4503  conjugal transfer protein TrbI  32.08 
 
 
123 aa  44.7  0.0005  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009661  Shew185_4441  pilus assembly protein  31.13 
 
 
123 aa  42.7  0.002  Shewanella baltica OS185  Bacteria  normal  normal 
 
 
-
 
NC_009998  Sbal195_4534  pilus assembly protein  31.13 
 
 
123 aa  42.7  0.002  Shewanella baltica OS195  Bacteria  normal  normal  0.783095 
 
 
-
 
NC_011664  Sbal223_4379  conjugal transfer protein TrbI  31.13 
 
 
123 aa  42.7  0.002  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_011668  Sbal223_4437  conjugal transfer protein TrbI  31.13 
 
 
123 aa  42.7  0.002  Shewanella baltica OS223  Bacteria  normal  0.391432  normal 
 
 
-
 
NC_009999  Sbal195_4626  hypothetical protein  34.94 
 
 
106 aa  40.8  0.007  Shewanella baltica OS195  Bacteria  normal  normal  0.893859 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>