9 homologs were found in PanDaTox collection
for query gene EcHS_A4768 on replicon NC_009800
Organism: Escherichia coli HS



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009800  EcHS_A4768  gcvB RNA  100 
 
 
113 bp  224  4e-57  Escherichia coli HS  Bacteria  hitchhiker  0.00000000000000442516  n/a   
 
 
-
 
NC_010468  EcolC_R0022    100 
 
 
147 bp  224  4e-57  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E4976  GcvB RNA  100 
 
 
147 bp  224  4e-57  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.00000000194719  n/a   
 
 
-
 
NC_011353  ECH74115_4073  GcvB RNA  100 
 
 
147 bp  224  4e-57  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.0000152516  normal 
 
 
-
 
NC_011080  SNSL254_A3208  GcvB RNA  97.32 
 
 
147 bp  198  2.0000000000000003e-49  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  hitchhiker  0.00208487  normal 
 
 
-
 
NC_011083  SeHA_C3193  GcvB RNA  97.32 
 
 
147 bp  198  2.0000000000000003e-49  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.0302134  normal 
 
 
-
 
NC_011094  SeSA_A3145  GcvB RNA  97.32 
 
 
147 bp  198  2.0000000000000003e-49  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  decreased coverage  0.000127329  normal 
 
 
-
 
NC_011149  SeAg_B3128  GcvB RNA  97.32 
 
 
147 bp  198  2.0000000000000003e-49  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  hitchhiker  0.0000113234  n/a   
 
 
-
 
NC_011205  SeD_A3308  GcvB RNA  97.32 
 
 
147 bp  198  2.0000000000000003e-49  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  decreased coverage  0.000406754  normal 
 
 
-
 
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