More than 300 homologs were found in PanDaTox collection
for query gene ECH74115_4731 on replicon NC_011353
Organism: Escherichia coli O157:H7 str. EC4115



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
CP001509  ECD_03273  sigma 54-dependent transcriptional regulator of rtcBA expression  98.5 
 
 
532 aa  1080    Escherichia coli BL21(DE3)  Bacteria  normal  0.385155  n/a   
 
 
-
 
NC_010468  EcolC_0292  regulator of RNA terminal phosphate cyclase  98.5 
 
 
532 aa  1080    Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
CP001637  EcDH1_0292  Sigma 54 interacting domain protein  98.5 
 
 
532 aa  1080    Escherichia coli DH1  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_0675  regulator of RNA terminal phosphate cyclase  60.94 
 
 
535 aa  645    Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_0403  Sigma 54 interacting domain protein  60.46 
 
 
527 aa  667    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_3589  regulator of RNA terminal phosphate cyclase  63.3 
 
 
538 aa  701    Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.858048 
 
 
-
 
NC_003295  RSc0222  sigma-54 interacting transcription regulator protein  72.9 
 
 
535 aa  785    Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_013421  Pecwa_0486  Sigma 54 interacting domain protein  60.65 
 
 
525 aa  669    Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_011353  ECH74115_4731  sigma-54 dependent transcriptional regulator RtcR  100 
 
 
532 aa  1093    Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_012912  Dd1591_0011  Sigma 54 interacting domain protein  61.77 
 
 
529 aa  665    Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_1944  regulator of RNA terminal phosphate cyclase  66.42 
 
 
533 aa  720    Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_2838  sigma 54 interactive regulator of RNA terminal phosphate cyclase  60.61 
 
 
530 aa  646    Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_007511  Bcep18194_B2415  Sigma54-dependent transcriptional regulator RtcR  63.86 
 
 
567 aa  701    Burkholderia sp. 383  Bacteria  normal  0.855599  normal 
 
 
-
 
NC_011205  SeD_A3892  transcriptional regulator RtcR  83.87 
 
 
527 aa  929    Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.246369  normal 
 
 
-
 
NC_010658  SbBS512_E3805  sigma-54 dependent transcriptional regulator RtcR  97.93 
 
 
532 aa  1078    Shigella boydii CDC 3083-94  Bacteria  normal  0.590867  n/a   
 
 
-
 
NC_008781  Pnap_0497  regulator of RNA terminal phosphate cyclase  59.4 
 
 
531 aa  637    Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_03225  hypothetical protein  98.5 
 
 
532 aa  1080    Escherichia coli BL21  Bacteria  normal  0.39424  n/a   
 
 
-
 
NC_011149  SeAg_B3723  transcriptional regulatory protein RtcR  83.68 
 
 
527 aa  929    Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_007948  Bpro_1470  regulator of RNA terminal phosphate cyclase  58.57 
 
 
531 aa  642    Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_3899  sigma-54 dependent transcriptional regulator RtcR  97.93 
 
 
532 aa  1077    Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_1274  regulator of RNA terminal phosphate cyclase  61.44 
 
 
566 aa  641    Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.48322  normal 
 
 
-
 
NC_008061  Bcen_4669  regulator of RNA terminal phosphate cyclase  64.47 
 
 
604 aa  714    Burkholderia cenocepacia AU 1054  Bacteria  normal  0.186968  n/a   
 
 
-
 
NC_009439  Pmen_1196  regulator of RNA terminal phosphate cyclase  66.73 
 
 
533 aa  716    Pseudomonas mendocina ymp  Bacteria  normal  0.330253  normal 
 
 
-
 
NC_008391  Bamb_5434  regulator of RNA terminal phosphate cyclase  63.67 
 
 
538 aa  706    Burkholderia ambifaria AMMD  Bacteria  normal  0.327506  normal 
 
 
-
 
NC_010498  EcSMS35_3703  sigma-54 dependent transcriptional regulator RtcR  96.62 
 
 
532 aa  1060    Escherichia coli SMS-3-5  Bacteria  normal  0.973563  normal  0.184346 
 
 
-
 
NC_008463  PA14_60600  transcriptional regulator RtcR  67.92 
 
 
531 aa  729    Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_008543  Bcen2424_3694  regulator of RNA terminal phosphate cyclase  64.47 
 
 
538 aa  713    Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_5221  transcriptional regulator RtcR  67.55 
 
 
532 aa  724    Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_3827  regulator of RNA terminal phosphate cyclase  64.12 
 
 
544 aa  681    Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.632099 
 
 
-
 
NC_012791  Vapar_4423  Sigma 54 interacting domain protein  61.05 
 
 
537 aa  644    Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009800  EcHS_A3619  sigma-54 dependent transcriptional regulator RtcR  98.12 
 
 
530 aa  1072    Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_0234  Sigma 54 interacting domain protein  56.18 
 
 
576 aa  618  1e-176  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_013223  Dret_0168  PAS modulated sigma54 specific transcriptional regulator, Fis family  34.45 
 
 
462 aa  173  5.999999999999999e-42  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.59199 
 
 
-
 
NC_011080  SNSL254_A2763  transcriptional regulator ZraR  37.59 
 
 
445 aa  173  6.999999999999999e-42  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C2825  transcriptional regulator ZraR  37.59 
 
 
445 aa  173  6.999999999999999e-42  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  0.479389  normal 
 
 
-
 
NC_009654  Mmwyl1_3203  sigma-54 dependent trancsriptional regulator  33.99 
 
 
493 aa  173  6.999999999999999e-42  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B2721  sigma-54 dependent transcriptional regulator/response regulator  37.59 
 
 
445 aa  173  6.999999999999999e-42  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_011205  SeD_A2938  transcriptional regulator ZraR  37.59 
 
 
445 aa  173  6.999999999999999e-42  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A2804  transcriptional regulatory protein ZraR  37.59 
 
 
445 aa  173  7.999999999999999e-42  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_1959  two component, sigma-54 specific, Fis family transcriptional regulator  40 
 
 
493 aa  171  4e-41  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_0143  two component, sigma54 specific, transcriptional regulator, Fis family  34.8 
 
 
449 aa  171  4e-41  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_0258  two component, sigma54 specific, Fis family transcriptional regulator  39.84 
 
 
451 aa  170  5e-41  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.667822  normal 
 
 
-
 
NC_009800  EcHS_A2707  sigma-54 dependent response regulator  36.88 
 
 
444 aa  169  9e-41  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010498  EcSMS35_2707  sigma-54 dependent response regulator  36.88 
 
 
444 aa  169  9e-41  Escherichia coli SMS-3-5  Bacteria  normal  normal 
 
 
-
 
NC_009801  EcE24377A_2839  sigma-54 dependent response regulator  36.88 
 
 
444 aa  169  9e-41  Escherichia coli E24377A  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_2536  two component, sigma54 specific, transcriptional regulator, Fis family  38.63 
 
 
477 aa  169  1e-40  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_007498  Pcar_1208  two component signal transduction response regulator  39.43 
 
 
470 aa  168  2e-40  Pelobacter carbinolicus DSM 2380  Bacteria  normal  0.0354694  n/a   
 
 
-
 
NC_011206  Lferr_0608  two component, sigma54 specific, transcriptional regulator, Fis family  36.7 
 
 
461 aa  168  2e-40  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_3356  two component, sigma54 specific, Fis family transcriptional regulator  35.33 
 
 
484 aa  168  2e-40  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_2980  two component, sigma54 specific, transcriptional regulator, Fis family  41.94 
 
 
496 aa  168  2e-40  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.53687  normal 
 
 
-
 
NC_011761  AFE_0447  sigma-54 dependent DNA-binding response regulator  36.7 
 
 
461 aa  168  2e-40  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_2753  sigma-54 factor interaction domain-containing protein  41.94 
 
 
496 aa  168  2e-40  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011891  A2cp1_1034  sigma54 specific transcriptional regulator, Fis family  42.24 
 
 
449 aa  168  2e-40  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
CP001509  ECD_02446  predicted DNA-binding response regulator in two-component system  36.52 
 
 
444 aa  167  2.9999999999999998e-40  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_1114  putative two component, sigma54 specific, transcriptional regulator, Fis family  36.52 
 
 
444 aa  167  2.9999999999999998e-40  Escherichia coli DH1  Bacteria  normal  0.922386  n/a   
 
 
-
 
NC_011353  ECH74115_3788  sigma-54 dependent response regulator  36.52 
 
 
444 aa  167  2.9999999999999998e-40  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal 
 
 
-
 
NC_010658  SbBS512_E2919  sigma-54 dependent response regulator  36.52 
 
 
444 aa  167  2.9999999999999998e-40  Shigella boydii CDC 3083-94  Bacteria  normal  0.70731  n/a   
 
 
-
 
NC_010468  EcolC_1123  two component, sigma54 specific, Fis family transcriptional regulator  36.52 
 
 
444 aa  167  2.9999999999999998e-40  Escherichia coli ATCC 8739  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_02410  hypothetical protein  36.52 
 
 
444 aa  167  2.9999999999999998e-40  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3076  two component, sigma54 specific, transcriptional regulator, Fis family  40.08 
 
 
454 aa  167  4e-40  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_3651  two component, sigma54 specific, Fis family transcriptional regulator  37.23 
 
 
445 aa  167  4e-40  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_2876  two component, sigma54 specific, transcriptional regulator, Fis family  41.53 
 
 
496 aa  167  5e-40  Methylobacterium populi BJ001  Bacteria  decreased coverage  0.0022159  normal 
 
 
-
 
NC_007760  Adeh_0975  sigma-54 dependent trancsriptional regulator  34.64 
 
 
457 aa  167  5e-40  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1037  putative sigma54 specific transcriptional regulator  42.24 
 
 
449 aa  167  5e-40  Anaeromyxobacter sp. K  Bacteria  normal  0.349182  n/a   
 
 
-
 
NC_010625  Bphy_5612  putative sigma54 specific transcriptional regulator  40.08 
 
 
772 aa  166  9e-40  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_013422  Hneap_2100  two component, sigma54 specific, transcriptional regulator, Fis family  31.59 
 
 
466 aa  166  1.0000000000000001e-39  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_1545  two component, sigma54 specific, transcriptional regulator, Fis family  36.9 
 
 
478 aa  166  1.0000000000000001e-39  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.224359  n/a   
 
 
-
 
NC_012917  PC1_3049  putative two component, sigma54 specific, transcriptional regulator, Fis family  37.23 
 
 
445 aa  166  1.0000000000000001e-39  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_3269  two component, sigma54 specific, Fis family transcriptional regulator  39.13 
 
 
467 aa  166  1.0000000000000001e-39  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.382263 
 
 
-
 
NC_008757  Pnap_4253  sigma-54 factor interaction domain-containing protein  31.07 
 
 
512 aa  166  1.0000000000000001e-39  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_1024  sigma-54 dependent trancsriptional regulator  33.16 
 
 
496 aa  165  2.0000000000000002e-39  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1058  two component, sigma54 specific, Fis family transcriptional regulator  36.61 
 
 
462 aa  165  2.0000000000000002e-39  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.0191246 
 
 
-
 
NC_013173  Dbac_2340  PAS modulated sigma54 specific transcriptional regulator, Fis family  34.67 
 
 
476 aa  165  2.0000000000000002e-39  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_2804  two component, sigma54 specific, Fis family transcriptional regulator  40.32 
 
 
494 aa  165  2.0000000000000002e-39  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.202391  normal  0.972852 
 
 
-
 
NC_011894  Mnod_0214  two component, sigma54 specific, transcriptional regulator, Fis family  41.37 
 
 
495 aa  164  3e-39  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.308761  n/a   
 
 
-
 
NC_009484  Acry_1472  two component, sigma54 specific, Fis family transcriptional regulator  39.5 
 
 
451 aa  164  3e-39  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_3149  two component, sigma54 specific, Fis family transcriptional regulator  41.37 
 
 
495 aa  164  4.0000000000000004e-39  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0143098 
 
 
-
 
NC_010814  Glov_2812  two component, sigma54 specific, transcriptional regulator, Fis family  39.35 
 
 
466 aa  164  4.0000000000000004e-39  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_1226  putative two component, sigma54 specific, transcriptional regulator, Fis family  36.88 
 
 
445 aa  164  5.0000000000000005e-39  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_1152  sigma-54 dependent DNA-binding response regulator  36.52 
 
 
445 aa  164  5.0000000000000005e-39  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_1259  two component, sigma54 specific, Fis family transcriptional regulator  36.52 
 
 
445 aa  164  5.0000000000000005e-39  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3629  two-component system response regulator  36.52 
 
 
445 aa  164  5.0000000000000005e-39  Yersinia pestis Angola  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_2708  two component, sigma-54 specific, Fis family transcriptional regulator  37.5 
 
 
468 aa  163  6e-39  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_0172  two component, sigma54 specific, Fis family transcriptional regulator  42.34 
 
 
458 aa  163  6e-39  Acidovorax citrulli AAC00-1  Bacteria  normal  0.833234  hitchhiker  0.00415361 
 
 
-
 
NC_012880  Dd703_2768  putative two component, sigma54 specific, transcriptional regulator, Fis family  38.76 
 
 
445 aa  163  7e-39  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010557  BamMC406_6393  two component, sigma54 specific, Fis family transcriptional regulator  32.13 
 
 
455 aa  163  7e-39  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.106085 
 
 
-
 
NC_008392  Bamb_5645  two component, sigma54 specific, Fis family transcriptional regulator  32.13 
 
 
455 aa  163  7e-39  Burkholderia ambifaria AMMD  Bacteria  normal  0.668018  normal  0.173621 
 
 
-
 
NC_009832  Spro_2440  NifA subfamily transcriptional regulator  34.57 
 
 
688 aa  163  9e-39  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_010627  Bphy_7728  transcriptional regulator NifA  37.14 
 
 
547 aa  162  1e-38  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_2074  sigma54 specific transcriptional regulator, Fis family  37.65 
 
 
772 aa  162  1e-38  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.150901 
 
 
-
 
NC_009436  Ent638_3039  two component, sigma54 specific, Fis family transcriptional regulator  36.17 
 
 
445 aa  162  1e-38  Enterobacter sp. 638  Bacteria  normal  0.992832  normal  0.337936 
 
 
-
 
NC_007517  Gmet_2453  two component, sigma54 specific, Fis family transcriptional regulator  36.64 
 
 
461 aa  162  1e-38  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.0000196128  normal 
 
 
-
 
NC_010512  Bcenmc03_6322  two component, sigma54 specific, Fis family transcriptional regulator  41.7 
 
 
458 aa  161  2e-38  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.385665 
 
 
-
 
NC_009656  PSPA7_2554  type 4 fimbriae expression regulatory protein PilR  41.22 
 
 
452 aa  162  2e-38  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0294  sensory box sigma-54 dependent DNA-binding response regulator  36.63 
 
 
455 aa  161  2e-38  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_2181  putative sigma54 specific transcriptional regulator  37.01 
 
 
594 aa  161  3e-38  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  hitchhiker  0.000000000000200827 
 
 
-
 
NC_008062  Bcen_6499  two component, sigma54 specific, Fis family transcriptional regulator  41.28 
 
 
458 aa  161  3e-38  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008544  Bcen2424_6734  two component, sigma54 specific, Fis family transcriptional regulator  41.28 
 
 
458 aa  161  3e-38  Burkholderia cenocepacia HI2424  Bacteria  normal  0.321079  normal 
 
 
-
 
NC_012918  GM21_2855  sigma54 specific transcriptional regulator, Fis family  43.4 
 
 
582 aa  161  3e-38  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010184  BcerKBAB4_0306  putative sigma54 specific transcriptional regulator  37.04 
 
 
455 aa  160  4e-38  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
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