18 homologs were found in PanDaTox collection
for query gene Dvul_R0064 on replicon NC_008751
Organism: Desulfovibrio vulgaris DP4



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008751  Dvul_R0064  SRP RNA; RNA component of signal recognition particle  100 
 
 
89 bp  176  6e-43  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_011769  DvMF_R0074  SRP RNA; RNA component of signal recognitionparti cle  92.13 
 
 
89 bp  121  3e-26  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_013173  Dbac_R0016  SRP RNA; RNA component of signal recognitionparti cle  93.75 
 
 
89 bp  95.6  2e-18  Desulfomicrobium baculatum DSM 4028  Bacteria  hitchhiker  0.00053216  n/a   
 
 
-
 
NC_011883  Ddes_R0025  SRP RNA; RNA component of signal recognitionparti cle  87.01 
 
 
85 bp  73.8  0.000000000006  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  hitchhiker  0.000612753  n/a   
 
 
-
 
NC_011661  Dtur_R0033  SRP RNA; RNA component of signal recognitionparti cle  100 
 
 
90 bp  65.9  0.000000001  Dictyoglomus turgidum DSM 6724  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_R0016  SRP RNA; RNA component of signal recognition particle  84.52 
 
 
89 bp  63.9  0.000000006  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_R0008  SRP RNA; RNA component of signal recognition particle  96.97 
 
 
114 bp  58  0.0000004  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  hitchhiker  0.0000000137936  n/a   
 
 
-
 
NC_011126  HY04AAS1_R0018  SRP RNA; RNA component of signal recognition particle  96.97 
 
 
83 bp  58  0.0000004  Hydrogenobaculum sp. Y04AAS1  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_R0010  SRP RNA; RNA component of signal recognition particle  96.97 
 
 
92 bp  58  0.0000004  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.0000000000232176  n/a   
 
 
-
 
NC_008009  Acid345_R0021  SRP RNA; RNA component of signal recognition particle  90.7 
 
 
114 bp  54  0.000006  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_R0001  SRP RNA; RNA component of signal recognition particle  96.67 
 
 
106 bp  52  0.00002  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.00137398  n/a   
 
 
-
 
NC_013525  Tter_R0006  SRP RNA; RNA component of signal recognitionparti cle  93.94 
 
 
103 bp  50.1  0.00009  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011901  Tgr7_R0017  SRP RNA; RNA component of signal recognitionparti cle  91.89 
 
 
118 bp  50.1  0.00009  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_R0020  SRP RNA; RNA component of signal recognitionparti cle  93.75 
 
 
95 bp  48.1  0.0004  Chloroflexus aggregans DSM 9485  Bacteria  hitchhiker  0.0000038101  normal 
 
 
-
 
NC_009635  Maeo_R0035  SRP RNA; RNA component of signal recognition particle  93.75 
 
 
308 bp  48.1  0.0004  Methanococcus aeolicus Nankai-3  Archaea  normal  n/a   
 
 
-
 
NC_007520  Tcr_R0008  SRP RNA; RNA component of signal recognitionparticle  96.43 
 
 
115 bp  48.1  0.0004  Thiomicrospira crunogena XCL-2  Bacteria  unclonable  7.72786e-17  n/a   
 
 
-
 
NC_013422  Hneap_R0025  SRP RNA; RNA component of signal recognition particle  89.74 
 
 
118 bp  46.1  0.001  Halothiobacillus neapolitanus c2  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_R0024  SRP RNA; RNA component of signal recognition particle  89.47 
 
 
92 bp  44.1  0.005  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.347083  normal  0.039362 
 
 
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