More than 300 homologs were found in PanDaTox collection
for query gene DvMF_0511 on replicon NC_011769
Organism: Desulfovibrio vulgaris str. 'Miyazaki F'



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011769  DvMF_0511  transcriptional regulator, LysR family  100 
 
 
699 aa  1367    Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    hitchhiker  0.00795049 
 
 
-
 
NC_013173  Dbac_0223  transcriptional regulator, LysR family  61.03 
 
 
314 aa  338  1.9999999999999998e-91  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_1907  LysR family transcriptional regulator  49.16 
 
 
308 aa  292  2e-77  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.279335  unclonable  0.0000102783 
 
 
-
 
NC_008554  Sfum_0896  LysR family transcriptional regulator  44.14 
 
 
295 aa  259  1e-67  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.204372  normal 
 
 
-
 
NC_013216  Dtox_3060  transcriptional regulator, LysR family  39.73 
 
 
293 aa  208  3e-52  Desulfotomaculum acetoxidans DSM 771  Bacteria  unclonable  0.00000000262954  decreased coverage  0.0000000999677 
 
 
-
 
NC_010184  BcerKBAB4_3192  LysR family transcriptional regulator  37.11 
 
 
295 aa  196  2e-48  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.863853  n/a   
 
 
-
 
NC_005945  BAS3285  LysR family transcriptional regulator  37.2 
 
 
297 aa  194  3e-48  Bacillus anthracis str. Sterne  Bacteria  normal  0.0242325  n/a   
 
 
-
 
NC_011773  BCAH820_3500  transcriptional regulator, LysR family  37.54 
 
 
297 aa  194  3e-48  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_007530  GBAA_3543  LysR family transcriptional regulator  37.2 
 
 
297 aa  194  3e-48  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_3255  LysR family transcriptional regulator  37.2 
 
 
297 aa  193  9e-48  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.841591  n/a   
 
 
-
 
NC_013131  Caci_6329  transcriptional regulator, LysR family  40.77 
 
 
299 aa  192  1e-47  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0290063  hitchhiker  0.00524783 
 
 
-
 
NC_011772  BCG9842_B1767  transcriptional regulator, LysR family  36.77 
 
 
297 aa  191  4e-47  Bacillus cereus G9842  Bacteria  normal  0.114066  normal  0.776401 
 
 
-
 
NC_006274  BCZK3199  LysR family transcriptional regulator  36.77 
 
 
297 aa  190  7e-47  Bacillus cereus E33L  Bacteria  normal  0.0827152  n/a   
 
 
-
 
NC_011725  BCB4264_A3482  transcriptional regulator, LysR family  36.77 
 
 
297 aa  189  2e-46  Bacillus cereus B4264  Bacteria  normal  0.26216  n/a   
 
 
-
 
NC_003909  BCE_3495  LysR family transcriptional regulator  35.84 
 
 
297 aa  186  2.0000000000000003e-45  Bacillus cereus ATCC 10987  Bacteria  normal  0.0190038  n/a   
 
 
-
 
NC_011658  BCAH187_A3511  transcriptional regulator, LysR family  36.77 
 
 
297 aa  183  7e-45  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1151  transcriptional regulator, LysR family  43.53 
 
 
307 aa  171  6e-41  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.88835 
 
 
-
 
NC_013205  Aaci_0620  transcriptional regulator, LysR family  38.73 
 
 
304 aa  161  4e-38  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  0.37658  n/a   
 
 
-
 
NC_011658  BCAH187_A2529  transcriptional regulator, LysR family  29.83 
 
 
290 aa  159  1e-37  Bacillus cereus AH187  Bacteria  hitchhiker  0.000206272  n/a   
 
 
-
 
NC_003909  BCE_2464  LysR family transcriptional regulator  29.15 
 
 
290 aa  159  2e-37  Bacillus cereus ATCC 10987  Bacteria  normal  0.268812  n/a   
 
 
-
 
NC_010001  Cphy_1293  LysR family transcriptional regulator  32.42 
 
 
294 aa  157  5.0000000000000005e-37  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.000772751  n/a   
 
 
-
 
NC_006274  BCZK2184  LysR family transcriptional regulator  29.49 
 
 
290 aa  153  1e-35  Bacillus cereus E33L  Bacteria  normal  0.529425  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2240  LysR family transcriptional regulator  30.82 
 
 
290 aa  152  2e-35  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.074644  n/a   
 
 
-
 
NC_005945  BAS2267  LysR family transcriptional regulator  28.81 
 
 
290 aa  151  4e-35  Bacillus anthracis str. Sterne  Bacteria  normal  0.211668  n/a   
 
 
-
 
NC_005957  BT9727_2227  LysR family transcriptional regulator  28.81 
 
 
290 aa  151  4e-35  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.000599262  n/a   
 
 
-
 
NC_011773  BCAH820_2451  transcriptional regulator, LysR family  28.47 
 
 
290 aa  151  4e-35  Bacillus cereus AH820  Bacteria  n/a    normal  0.893513 
 
 
-
 
NC_007530  GBAA_2435  LysR family transcriptional regulator  28.81 
 
 
290 aa  151  4e-35  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0368529  n/a   
 
 
-
 
NC_012917  PC1_1470  transcriptional regulator, LysR family  34.9 
 
 
291 aa  148  4.0000000000000006e-34  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.91996  n/a   
 
 
-
 
NC_011772  BCG9842_B2940  transcriptional regulator, LysR family  29.11 
 
 
288 aa  147  6e-34  Bacillus cereus G9842  Bacteria  hitchhiker  0.00388333  hitchhiker  0.000000297916 
 
 
-
 
NC_010625  Bphy_5687  LysR family transcriptional regulator  38.49 
 
 
295 aa  144  5e-33  Burkholderia phymatum STM815  Bacteria  normal  normal  0.145424 
 
 
-
 
NC_008789  Hhal_1047  LysR family transcriptional regulator  34.93 
 
 
318 aa  143  9.999999999999999e-33  Halorhodospira halophila SL1  Bacteria  hitchhiker  0.00687136  n/a   
 
 
-
 
NC_011725  BCB4264_A2391  transcriptional regulator, LysR family  28.28 
 
 
288 aa  141  3.9999999999999997e-32  Bacillus cereus B4264  Bacteria  normal  0.863078  n/a   
 
 
-
 
NC_011831  Cagg_1912  transcriptional regulator, LysR family  41.06 
 
 
301 aa  139  1e-31  Chloroflexus aggregans DSM 9485  Bacteria  decreased coverage  0.0000315182  normal  0.0709139 
 
 
-
 
NC_013093  Amir_1151  transcriptional regulator, LysR family  38.55 
 
 
302 aa  139  1e-31  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_2864  LysR family transcriptional regulator  34.6 
 
 
293 aa  139  2e-31  Escherichia coli E24377A  Bacteria  normal  0.0164886  n/a   
 
 
-
 
NC_009468  Acry_3308  LysR family transcriptional regulator  36.49 
 
 
294 aa  138  3.0000000000000003e-31  Acidiphilium cryptum JF-5  Bacteria  normal  n/a   
 
 
-
 
NC_012892  B21_02435  hypothetical protein  34.26 
 
 
293 aa  136  9.999999999999999e-31  Escherichia coli BL21  Bacteria  normal  0.778712  n/a   
 
 
-
 
CP001509  ECD_02471  predicted DNA-binding transcriptional regulator  34.26 
 
 
293 aa  136  9.999999999999999e-31  Escherichia coli BL21(DE3)  Bacteria  normal  0.606343  n/a   
 
 
-
 
CP001637  EcDH1_1091  transcriptional regulator, LysR family  34.26 
 
 
293 aa  136  9.999999999999999e-31  Escherichia coli DH1  Bacteria  normal  0.0201845  n/a   
 
 
-
 
NC_009800  EcHS_A2734  LysR family transcriptional regulator  34.26 
 
 
293 aa  136  9.999999999999999e-31  Escherichia coli HS  Bacteria  normal  0.0381749  n/a   
 
 
-
 
NC_010468  EcolC_1100  LysR family transcriptional regulator  34.26 
 
 
293 aa  136  9.999999999999999e-31  Escherichia coli ATCC 8739  Bacteria  hitchhiker  0.00749087  normal  0.244926 
 
 
-
 
NC_011353  ECH74115_3814  transcriptional regulator, LysR family  33.91 
 
 
308 aa  135  1.9999999999999998e-30  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.869159  normal 
 
 
-
 
NC_010498  EcSMS35_2730  LysR family transcriptional regulator  33.56 
 
 
293 aa  134  3.9999999999999996e-30  Escherichia coli SMS-3-5  Bacteria  normal  0.118271  normal 
 
 
-
 
NC_013411  GYMC61_2223  transcriptional regulator, LysR family  35.71 
 
 
302 aa  132  2.0000000000000002e-29  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011772  BCG9842_B1747  transcriptional regulator, LysR family  34.14 
 
 
283 aa  130  6e-29  Bacillus cereus G9842  Bacteria  normal  0.337394  normal  0.482419 
 
 
-
 
NC_011901  Tgr7_0820  transcriptional regulator, LysR family  31.91 
 
 
307 aa  130  8.000000000000001e-29  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_2156  LysR family transcriptional regulator  28.23 
 
 
300 aa  129  2.0000000000000002e-28  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3213  LysR family transcriptional regulator  33.33 
 
 
283 aa  128  4.0000000000000003e-28  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.146504  n/a   
 
 
-
 
NC_008261  CPF_1726  LysR family transcriptional regulator  23.69 
 
 
294 aa  127  5e-28  Clostridium perfringens ATCC 13124  Bacteria  decreased coverage  0.000000302117  n/a   
 
 
-
 
NC_011658  BCAH187_A3522  transcriptional regulator, LysR family  34.01 
 
 
283 aa  127  6e-28  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_2835  LysR family transcriptional regulator  33.68 
 
 
309 aa  127  7e-28  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_011083  SeHA_C2860  putative LysR substrate binding domain  31.91 
 
 
314 aa  127  9e-28  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal  0.25895 
 
 
-
 
NC_011080  SNSL254_A2856  LysR substrate binding domain protein  31.91 
 
 
299 aa  127  9e-28  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.294581  normal  0.729486 
 
 
-
 
NC_011725  BCB4264_A3501  transcriptional regulator, LysR family  33.74 
 
 
283 aa  126  1e-27  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_3511  LysR family transcriptional regulator  33.2 
 
 
283 aa  125  2e-27  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_5512  transcriptional regulator, LysR family  34.69 
 
 
311 aa  125  2e-27  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_1454  LysR family transcriptional regulator  23.34 
 
 
294 aa  125  2e-27  Clostridium perfringens SM101  Bacteria  normal  0.0215589  n/a   
 
 
-
 
NC_011094  SeSA_A2838  LysR substrate binding domain protein  31.58 
 
 
299 aa  126  2e-27  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.329645  normal 
 
 
-
 
NC_005957  BT9727_3267  LysR family transcriptional regulator  32.39 
 
 
283 aa  125  3e-27  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.486644  n/a   
 
 
-
 
NC_011149  SeAg_B2754  LysR substrate binding domain protein  31.91 
 
 
299 aa  125  4e-27  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.114748  n/a   
 
 
-
 
NC_009972  Haur_0396  LysR family transcriptional regulator  33.45 
 
 
300 aa  124  7e-27  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.21777  n/a   
 
 
-
 
NC_011205  SeD_A2972  LysR substrate binding domain-containing protein  31.25 
 
 
299 aa  124  8e-27  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.627611  normal 
 
 
-
 
NC_010625  Bphy_7088  LysR family transcriptional regulator  33.92 
 
 
314 aa  124  8e-27  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_006274  BCZK3211  LysR family transcriptional regulator  32.39 
 
 
283 aa  123  9.999999999999999e-27  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS3297  LysR family transcriptional regulator  32.39 
 
 
283 aa  122  1.9999999999999998e-26  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1631  transcriptional regulator, LysR family  28.72 
 
 
310 aa  122  1.9999999999999998e-26  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013889  TK90_1993  transcriptional regulator, LysR family  32.33 
 
 
319 aa  122  1.9999999999999998e-26  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_5024  LysR family transcriptional regulator  33.71 
 
 
311 aa  122  1.9999999999999998e-26  Anabaena variabilis ATCC 29413  Bacteria  normal  0.0432035  normal  0.889367 
 
 
-
 
NC_007530  GBAA_3557  LysR family transcriptional regulator  32.39 
 
 
283 aa  122  1.9999999999999998e-26  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.423553  n/a   
 
 
-
 
NC_011773  BCAH820_3514  transcriptional regulator, LysR family  32.39 
 
 
283 aa  122  1.9999999999999998e-26  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_012793  GWCH70_1345  transcriptional regulator, LysR family  33.73 
 
 
300 aa  122  3e-26  Geobacillus sp. WCH70  Bacteria  normal  0.0839604  n/a   
 
 
-
 
NC_003295  RSc0214  transcription regulator protein  36.18 
 
 
288 aa  119  1.9999999999999998e-25  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.526816 
 
 
-
 
NC_007948  Bpro_2482  LysR family transcriptional regulator  36.4 
 
 
303 aa  119  1.9999999999999998e-25  Polaromonas sp. JS666  Bacteria  normal  0.086853  normal  0.0180215 
 
 
-
 
NC_007520  Tcr_1555  LysR family transcriptional regulator  27.03 
 
 
318 aa  118  5e-25  Thiomicrospira crunogena XCL-2  Bacteria  hitchhiker  0.0000000214293  n/a   
 
 
-
 
NC_007949  Bpro_5108  LysR family transcriptional regulator  36.11 
 
 
301 aa  117  6.9999999999999995e-25  Polaromonas sp. JS666  Bacteria  normal  0.336118  normal 
 
 
-
 
NC_011206  Lferr_1817  transcriptional regulator, LysR family  32.18 
 
 
303 aa  117  7.999999999999999e-25  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  normal  normal 
 
 
-
 
NC_011761  AFE_2158  transcriptional regulator, LysR family  32.18 
 
 
301 aa  117  8.999999999999998e-25  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  n/a   
 
 
-
 
NC_011901  Tgr7_1244  transcriptional regulator, LysR family  35.32 
 
 
286 aa  116  1.0000000000000001e-24  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_012792  Vapar_5650  transcriptional regulator, LysR family  37.05 
 
 
303 aa  116  1.0000000000000001e-24  Variovorax paradoxus S110  Bacteria  decreased coverage  0.00706693  n/a   
 
 
-
 
NC_009512  Pput_5257  LysR family transcriptional regulator  33.79 
 
 
320 aa  116  2.0000000000000002e-24  Pseudomonas putida F1  Bacteria  normal  normal  0.85963 
 
 
-
 
NC_013093  Amir_0548  transcriptional regulator, LysR family  35.77 
 
 
272 aa  115  2.0000000000000002e-24  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A0687  LysR family transcriptional regulator  30.61 
 
 
311 aa  115  3e-24  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.591422  n/a   
 
 
-
 
NC_011004  Rpal_3677  transcriptional regulator, LysR family  34.78 
 
 
292 aa  115  3e-24  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.307485  n/a   
 
 
-
 
NC_010322  PputGB1_5397  LysR family transcriptional regulator  33.11 
 
 
320 aa  114  4.0000000000000004e-24  Pseudomonas putida GB-1  Bacteria  normal  0.547943  normal  0.012277 
 
 
-
 
NC_011772  BCG9842_B2056  HTH-type transcriptional regulator GltR  32.95 
 
 
285 aa  114  6e-24  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_0456  LysR family transcriptional regulator  32.3 
 
 
294 aa  114  6e-24  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_1081  LysR family transcriptional regulator  39.84 
 
 
300 aa  114  6e-24  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.440964  normal 
 
 
-
 
NC_002947  PP_5348  LysR family transcriptional regulator  33.45 
 
 
320 aa  114  7.000000000000001e-24  Pseudomonas putida KT2440  Bacteria  normal  hitchhiker  0.0041705 
 
 
-
 
NC_011884  Cyan7425_1599  transcriptional regulator, LysR family  33.33 
 
 
320 aa  113  9e-24  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.546474 
 
 
-
 
NC_007005  Psyr_5062  regulatory protein, LysR:LysR, substrate-binding  33.11 
 
 
316 aa  113  1.0000000000000001e-23  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_007348  Reut_B4655  LysR family transcriptional regulator  32.16 
 
 
310 aa  113  1.0000000000000001e-23  Ralstonia eutropha JMP134  Bacteria  normal  0.0129573  n/a   
 
 
-
 
NC_007413  Ava_4535  LysR family transcriptional regulator  35.04 
 
 
312 aa  113  1.0000000000000001e-23  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_010001  Cphy_1757  LysR family transcriptional regulator  24.49 
 
 
292 aa  113  1.0000000000000001e-23  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_4480  LysR family transcriptional regulator  33.33 
 
 
320 aa  112  2.0000000000000002e-23  Pseudomonas mendocina ymp  Bacteria  normal  0.678379  normal 
 
 
-
 
NC_012793  GWCH70_1713  transcriptional regulator, LysR family  25.52 
 
 
304 aa  112  3e-23  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_007577  PMT9312_0149  putative Rubisco transcriptional regulator  27.8 
 
 
319 aa  112  3e-23  Prochlorococcus marinus str. MIT 9312  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_4716  LysR family transcriptional regulator  37.06 
 
 
296 aa  111  3e-23  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_011662  Tmz1t_0121  transcriptional regulator, LysR family  34.8 
 
 
304 aa  112  3e-23  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4477  transcriptional regulator, LysR family  31.76 
 
 
315 aa  111  5e-23  Variovorax paradoxus S110  Bacteria  normal  0.631102  n/a   
 
 
-
 
NC_013422  Hneap_0637  transcriptional regulator, LysR family  27.42 
 
 
312 aa  111  5e-23  Halothiobacillus neapolitanus c2  Bacteria  hitchhiker  0.0000713061  n/a   
 
 
-
 
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