56 homologs were found in PanDaTox collection
for query gene DvMF_0253 on replicon NC_011769
Organism: Desulfovibrio vulgaris str. 'Miyazaki F'



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011769  DvMF_0253  putative signal transduction histidine kinase  100 
 
 
153 aa  309  6.999999999999999e-84  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    decreased coverage  0.00246404 
 
 
-
 
NC_008751  Dvul_1629  putative signal transduction histidine kinase  35.57 
 
 
147 aa  88.2  4e-17  Desulfovibrio vulgaris DP4  Bacteria  normal  0.440853  normal 
 
 
-
 
NC_013223  Dret_1393  putative anti-sigma regulatory factor, serine/threonine protein kinase  32.56 
 
 
159 aa  74.3  0.0000000000005  Desulfohalobium retbaense DSM 5692  Bacteria  normal  0.132217  normal  0.754718 
 
 
-
 
NC_007519  Dde_1722  putative anti-sigma regulatory factor (serine/threonine protein kinase)  41.94 
 
 
118 aa  71.6  0.000000000004  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.0271292  n/a   
 
 
-
 
NC_008312  Tery_4818  putative anti-sigma regulatory factor, serine/threonine protein kinase  32.5 
 
 
140 aa  61.6  0.000000004  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_011831  Cagg_2065  putative anti-sigma regulatory factor, serine/threonine protein kinase  31.97 
 
 
143 aa  61.2  0.000000004  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_5361  putative anti-sigma regulatory factor, serine/threonine protein kinase  38.54 
 
 
265 aa  55.8  0.0000002  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_0663  putative anti-sigma regulatory factor (Ser/Thr protein kinase)  38.78 
 
 
142 aa  55.8  0.0000002  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.00575622  normal  0.0631773 
 
 
-
 
NC_009483  Gura_2043  putative anti-sigma regulatory factor, serine/threonine protein kinase  31.53 
 
 
141 aa  54.3  0.0000007  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000388253  n/a   
 
 
-
 
NC_007498  Pcar_1875  anti-sigma regulatory factor  30.08 
 
 
139 aa  53.1  0.000001  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.000000201046  n/a   
 
 
-
 
NC_002939  GSU1426  rsbW protein, putative  30.21 
 
 
149 aa  51.2  0.000005  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1228  putative anti-sigma regulatory factor (serine/threonine protein kinase)  29.36 
 
 
144 aa  50.4  0.000008  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.011235 
 
 
-
 
NC_014248  Aazo_2838  putative anti-sigma regulatory factor serine/threonine protein kinase  31.63 
 
 
147 aa  50.1  0.00001  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_2753  signal transduction histidine kinase  36.59 
 
 
325 aa  48.5  0.00003  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_4521  putative GAF sensor protein  38.37 
 
 
851 aa  48.9  0.00003  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_3675  putative anti-sigma regulatory factor, serine/threonine protein kinase  32.11 
 
 
143 aa  48.1  0.00004  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.709341  n/a   
 
 
-
 
NC_011146  Gbem_2650  putative anti-sigma regulatory factor, serine/threonine protein kinase  29.29 
 
 
141 aa  47.8  0.00005  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_1584  putative anti-sigma regulatory factor, serine/threonine protein kinase  29.29 
 
 
141 aa  47.8  0.00005  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_008609  Ppro_2661  putative anti-sigma regulatory factor, serine/threonine protein kinase  28.43 
 
 
151 aa  47.4  0.00007  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0789133  n/a   
 
 
-
 
NC_007778  RPB_4126  signal transduction histidine kinase  33.33 
 
 
345 aa  47.4  0.00008  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.583634  normal 
 
 
-
 
NC_002977  MCA1685  anti-sigma B factor  28.93 
 
 
142 aa  47  0.00009  Methylococcus capsulatus str. Bath  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_2188  putative anti-sigma regulatory factor, serine/threonine protein kinase  25.44 
 
 
142 aa  46.2  0.0001  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_2087  putative PAS/PAC sensor protein  30.43 
 
 
666 aa  45.8  0.0002  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.00000976195  normal  0.0252685 
 
 
-
 
NC_007406  Nwi_1756  Signal transduction histidine kinase  29.41 
 
 
362 aa  45.8  0.0002  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.38054  normal  0.143124 
 
 
-
 
NC_010814  Glov_2102  putative anti-sigma regulatory factor, serine/threonine protein kinase  28.23 
 
 
143 aa  45.4  0.0002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_0315  putative anti-sigma regulatory factor, serine/threonine protein kinase  33.07 
 
 
147 aa  45.4  0.0003  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_4219  signal transduction histidine kinase  31.33 
 
 
362 aa  45.1  0.0004  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008554  Sfum_2452  putative anti-sigma regulatory factor, serine/threonine protein kinase  30.77 
 
 
147 aa  44.3  0.0007  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_1931  multi-sensor signal transduction histidine kinase  34.04 
 
 
1385 aa  43.5  0.001  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_1195  anti-sigma-factor antagonist  30.53 
 
 
269 aa  43.9  0.001  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.123525  normal 
 
 
-
 
NC_010511  M446_6532  signal transduction histidine kinase  31.58 
 
 
368 aa  43.5  0.001  Methylobacterium sp. 4-46  Bacteria  normal  0.0793858  normal  0.366363 
 
 
-
 
NC_007333  Tfu_0177  hypothetical protein  33.73 
 
 
147 aa  42.7  0.002  Thermobifida fusca YX  Bacteria  normal  0.160815  n/a   
 
 
-
 
NC_007333  Tfu_2967  hypothetical protein  35.09 
 
 
166 aa  42.4  0.002  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_4326  signal transduction histidine kinase  28.46 
 
 
782 aa  42.4  0.002  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.173856 
 
 
-
 
NC_011894  Mnod_6649  signal transduction histidine kinase  33.33 
 
 
739 aa  42.7  0.002  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_2555  anti-sigma-factor antagonist  28.85 
 
 
249 aa  42.4  0.002  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_5039  signal transduction histidine kinase  34 
 
 
381 aa  42.7  0.002  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_2974  putative anti-sigma regulatory factor, serine/threonine protein kinase  29.59 
 
 
151 aa  42.7  0.002  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A3288  Signal transduction histidine kinase  60 
 
 
662 aa  42  0.003  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.390564  n/a   
 
 
-
 
NC_007484  Noc_2977  anti-sigma regulatory factor (Ser/Thr protein kinase  27.27 
 
 
141 aa  42  0.003  Nitrosococcus oceani ATCC 19707  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_1411  signal transduction histidine kinase  32.46 
 
 
500 aa  42  0.003  Nakamurella multipartita DSM 44233  Bacteria  normal  0.597292  normal 
 
 
-
 
NC_013757  Gobs_4185  signal transduction histidine kinase  33.33 
 
 
494 aa  41.6  0.004  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_2428  signal transduction histidine kinase  35.62 
 
 
360 aa  41.2  0.005  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.391955  decreased coverage  0.00462713 
 
 
-
 
NC_007494  RSP_3225  periplasmic sensor signal transduction histidine kinase  34.34 
 
 
541 aa  41.2  0.005  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009050  Rsph17029_3963  signal transduction histidine kinase  34.34 
 
 
538 aa  41.2  0.005  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_2664  putative anti-sigma regulatory factor, serine/threonine protein kinase  32.18 
 
 
139 aa  40.8  0.007  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009012  Cthe_2901  putative anti-sigma regulatory factor, serine/threonine protein kinase  20.8 
 
 
144 aa  40.8  0.008  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.00340315  n/a   
 
 
-
 
NC_011989  Avi_0384  two component sensor kinase  34.25 
 
 
344 aa  40.8  0.008  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007355  Mbar_A1483  sensory transduction histidine kinase  26.17 
 
 
704 aa  40.8  0.008  Methanosarcina barkeri str. Fusaro  Archaea  normal  0.681498  normal 
 
 
-
 
NC_010172  Mext_4526  histidine kinase dimerisation/phosphoacceptor  33 
 
 
381 aa  40.4  0.008  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.315667 
 
 
-
 
NC_011004  Rpal_2710  signal transduction histidine kinase  29.41 
 
 
363 aa  40.4  0.009  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.304131  n/a   
 
 
-
 
NC_013739  Cwoe_4563  putative anti-sigma regulatory factor, serine/threonine protein kinase  32.48 
 
 
286 aa  40.4  0.009  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_2192  signal transduction histidine kinase  27.73 
 
 
362 aa  40.4  0.009  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_3827  integral membrane sensor signal transduction histidine kinase  35.14 
 
 
472 aa  40.4  0.009  Methylobacterium populi BJ001  Bacteria  normal  0.935643  normal 
 
 
-
 
NC_010338  Caul_4555  signal transduction histidine kinase  31.58 
 
 
369 aa  40.4  0.01  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_4986  signal transduction histidine kinase  33 
 
 
381 aa  40.4  0.01  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.196103 
 
 
-
 
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