10 homologs were found in PanDaTox collection
for query gene DhcVS_1135 on replicon NC_013552
Organism: Dehalococcoides sp. VS



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013552  DhcVS_1135  Tfp pilus assembly protein  100 
 
 
151 aa  307  2.9999999999999997e-83  Dehalococcoides sp. VS  Bacteria  normal  0.54413  n/a   
 
 
-
 
NC_009455  DehaBAV1_1165  hypothetical protein  91.39 
 
 
151 aa  282  1.0000000000000001e-75  Dehalococcoides sp. BAV1  Bacteria  normal  0.439342  n/a   
 
 
-
 
NC_002936  DET1353  GspI/GspJ family type II secretion system protein  89.4 
 
 
151 aa  279  1e-74  Dehalococcoides ethenogenes 195  Bacteria  normal  0.0972416  n/a   
 
 
-
 
NC_009439  Pmen_2921  general secretion pathway protein I  24.81 
 
 
127 aa  45.1  0.0003  Pseudomonas mendocina ymp  Bacteria  normal  0.259382  normal  0.143234 
 
 
-
 
NC_003910  CPS_4585  general secretion pathway protein J  27.91 
 
 
219 aa  42.4  0.002  Colwellia psychrerythraea 34H  Bacteria  normal  0.979233  n/a   
 
 
-
 
NC_007484  Noc_0756  general secretion pathway protein J  29.76 
 
 
258 aa  41.2  0.005  Nitrosococcus oceani ATCC 19707  Bacteria  normal  0.602108  n/a   
 
 
-
 
NC_008699  Noca_1123  hypothetical protein  26.74 
 
 
585 aa  40.4  0.009  Nocardioides sp. JS614  Bacteria  normal  0.12304  n/a   
 
 
-
 
NC_011071  Smal_1379  type IV pilus modification protein PilV  32.32 
 
 
165 aa  40.4  0.009  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.29272  normal 
 
 
-
 
NC_007912  Sde_3577  ATPase  27.27 
 
 
146 aa  40  0.01  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.44565 
 
 
-
 
NC_008148  Rxyl_1161  prepilin-type cleavage/methylation-like protein  22.96 
 
 
141 aa  40  0.01  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
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