More than 300 homologs were found in PanDaTox collection
for query gene DehaBAV1_0398 on replicon NC_009455
Organism: Dehalococcoides sp. BAV1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009455  DehaBAV1_0398  extracellular solute-binding protein  100 
 
 
257 aa  526  1e-148  Dehalococcoides sp. BAV1  Bacteria  unclonable  0.00000000444097  n/a   
 
 
-
 
NC_002936  DET0419  amino acid ABC transporter, periplasmic amino acid-binding protein  87.31 
 
 
260 aa  449  1e-125  Dehalococcoides ethenogenes 195  Bacteria  unclonable  0.00000266261  n/a   
 
 
-
 
NC_013552  DhcVS_362  amino acid ABC transporter, periplasmic binding protein  89.23 
 
 
260 aa  442  1e-123  Dehalococcoides sp. VS  Bacteria  unclonable  0.000000000000733431  n/a   
 
 
-
 
NC_002939  GSU3406  amino acid ABC transporter, periplasmic amino acid-binding protein  43.97 
 
 
251 aa  198  6e-50  Geobacter sulfurreducens PCA  Bacteria  normal  0.940811  n/a   
 
 
-
 
NC_011146  Gbem_1930  extracellular solute-binding protein family 3  44.14 
 
 
248 aa  190  2e-47  Geobacter bemidjiensis Bem  Bacteria  hitchhiker  0.00000351018  n/a   
 
 
-
 
NC_012918  GM21_2287  extracellular solute-binding protein family 3  40.32 
 
 
248 aa  188  7e-47  Geobacter sp. M21  Bacteria  n/a    decreased coverage  0.0000000177355 
 
 
-
 
NC_011883  Ddes_0588  extracellular solute-binding protein family 3  40.56 
 
 
247 aa  188  8e-47  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  hitchhiker  0.00341778  n/a   
 
 
-
 
NC_011883  Ddes_0589  extracellular solute-binding protein family 3  41.52 
 
 
247 aa  185  7e-46  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  0.0251025  n/a   
 
 
-
 
NC_008751  Dvul_1824  extracellular solute-binding protein  42.61 
 
 
246 aa  179  4e-44  Desulfovibrio vulgaris DP4  Bacteria  normal  0.0824863  normal  0.890252 
 
 
-
 
NC_011769  DvMF_0860  extracellular solute-binding protein family 3  39.22 
 
 
246 aa  179  4.999999999999999e-44  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.599972 
 
 
-
 
NC_013223  Dret_1345  extracellular solute-binding protein family 3  42.79 
 
 
244 aa  176  4e-43  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.706269 
 
 
-
 
NC_007519  Dde_2306  extracellular solute-binding protein  40.89 
 
 
246 aa  172  2.9999999999999996e-42  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  decreased coverage  0.0000000079937  n/a   
 
 
-
 
NC_013385  Adeg_2053  extracellular solute-binding protein family 3  37.25 
 
 
271 aa  172  5e-42  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_008346  Swol_1070  glutamine ABC transporter, glutamine-binding protein  37.64 
 
 
263 aa  171  1e-41  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.623597  n/a   
 
 
-
 
NC_007644  Moth_1126  extracellular solute-binding protein  39.74 
 
 
284 aa  169  4e-41  Moorella thermoacetica ATCC 39073  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_1848  polar amino acid ABC transporter, inner membrane subunit  39.19 
 
 
513 aa  165  5.9999999999999996e-40  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013173  Dbac_1459  extracellular solute-binding protein family 3  41.63 
 
 
246 aa  163  2.0000000000000002e-39  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_009637  MmarC7_1231  extracellular solute-binding protein  36.78 
 
 
260 aa  162  7e-39  Methanococcus maripaludis C7  Archaea  normal  normal  0.62778 
 
 
-
 
NC_010524  Lcho_1148  extracellular solute-binding protein  43.64 
 
 
283 aa  160  1e-38  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009253  Dred_0727  extracellular solute-binding protein  34.75 
 
 
264 aa  160  2e-38  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.00114827  n/a   
 
 
-
 
NC_008825  Mpe_A0131  glutamine transport system substrate-binding protein  42.66 
 
 
285 aa  159  4e-38  Methylibium petroleiphilum PM1  Bacteria  normal  0.210199  normal  0.0525108 
 
 
-
 
NC_009253  Dred_0771  extracellular solute-binding protein  36.05 
 
 
264 aa  158  9e-38  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.0000484393  n/a   
 
 
-
 
NC_007413  Ava_3886  amino acid ABC transporter permease  39.17 
 
 
501 aa  157  1e-37  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_3442  extracellular solute-binding protein  40.18 
 
 
285 aa  157  2e-37  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_010424  Daud_1135  extracellular solute-binding protein  32.95 
 
 
268 aa  155  4e-37  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  0.0567537  n/a   
 
 
-
 
NC_009975  MmarC6_0724  extracellular solute-binding protein  36.4 
 
 
260 aa  152  2.9999999999999998e-36  Methanococcus maripaludis C6  Archaea  normal  0.531273  n/a   
 
 
-
 
NC_009901  Spea_3397  extracellular solute-binding protein  36.61 
 
 
245 aa  152  7e-36  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_011899  Hore_18770  extracellular solute-binding protein family 3  36.26 
 
 
244 aa  149  4e-35  Halothermothrix orenii H 168  Bacteria  unclonable  1.74936e-17  n/a   
 
 
-
 
NC_009135  MmarC5_1475  extracellular solute-binding protein  35.63 
 
 
260 aa  149  6e-35  Methanococcus maripaludis C5  Archaea  normal  0.0984243  n/a   
 
 
-
 
NC_008148  Rxyl_0501  extracellular solute-binding protein  39.55 
 
 
281 aa  147  2.0000000000000003e-34  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009092  Shew_3166  extracellular solute-binding protein  36.36 
 
 
242 aa  144  2e-33  Shewanella loihica PV-4  Bacteria  normal  0.190587  normal 
 
 
-
 
NC_013411  GYMC61_3517  extracellular solute-binding protein family 3  36.49 
 
 
273 aa  141  9.999999999999999e-33  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_008531  LEUM_1236  ABC-type amino acid transport system, periplasmic component  35.65 
 
 
278 aa  141  9.999999999999999e-33  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  normal  n/a   
 
 
-
 
NC_011661  Dtur_1051  extracellular solute-binding protein family 3  36.82 
 
 
257 aa  141  9.999999999999999e-33  Dictyoglomus turgidum DSM 6724  Bacteria  normal  0.310082  n/a   
 
 
-
 
NC_007948  Bpro_1050  extracellular solute-binding protein  40.64 
 
 
286 aa  139  3.9999999999999997e-32  Polaromonas sp. JS666  Bacteria  normal  0.875025  normal  0.0927945 
 
 
-
 
NC_009831  Ssed_3760  extracellular solute-binding protein  34.65 
 
 
245 aa  139  6e-32  Shewanella sediminis HAW-EB3  Bacteria  decreased coverage  0.000000882813  normal 
 
 
-
 
NC_011830  Dhaf_4752  extracellular solute-binding protein family 3  30.53 
 
 
269 aa  137  2e-31  Desulfitobacterium hafniense DCB-2  Bacteria  unclonable  0.00000000000000170582  n/a   
 
 
-
 
NC_009439  Pmen_2009  cystine transporter subunit  33.73 
 
 
265 aa  134  9.999999999999999e-31  Pseudomonas mendocina ymp  Bacteria  normal  0.163072  decreased coverage  0.0074335 
 
 
-
 
NC_010320  Teth514_0468  extracellular solute-binding protein  32.43 
 
 
260 aa  133  1.9999999999999998e-30  Thermoanaerobacter sp. X514  Bacteria  unclonable  0.000000000361301  n/a   
 
 
-
 
NC_007908  Rfer_3807  extracellular solute-binding protein  34.53 
 
 
255 aa  134  1.9999999999999998e-30  Rhodoferax ferrireducens T118  Bacteria  normal  0.0339434  n/a   
 
 
-
 
NC_007948  Bpro_2725  extracellular solute-binding protein  35.75 
 
 
255 aa  133  1.9999999999999998e-30  Polaromonas sp. JS666  Bacteria  normal  normal  0.377172 
 
 
-
 
NC_009486  Tpet_0324  extracellular solute-binding protein  35.83 
 
 
246 aa  133  3e-30  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008599  CFF8240_1232  arginine-binding periplasmic protein 1  32 
 
 
242 aa  132  5e-30  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_0342  extracellular solute-binding protein  37.44 
 
 
246 aa  132  6e-30  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_009665  Shew185_0951  extracellular solute-binding protein  36.28 
 
 
244 aa  131  1.0000000000000001e-29  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_009997  Sbal195_0986  extracellular solute-binding protein  36.28 
 
 
244 aa  131  1.0000000000000001e-29  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_009052  Sbal_3392  extracellular solute-binding protein  36.28 
 
 
244 aa  131  1.0000000000000001e-29  Shewanella baltica OS155  Bacteria  normal  0.0624048  n/a   
 
 
-
 
NC_004347  SO_1044  amino acid ABC transporter, periplasmic amino acid-binding protein  35.35 
 
 
244 aa  129  4.0000000000000003e-29  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_011772  BCG9842_B4902  putative amino acid ABC transporter, amino acid-binding protein  30 
 
 
264 aa  129  4.0000000000000003e-29  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_0882  extracellular solute-binding protein  35.81 
 
 
244 aa  129  4.0000000000000003e-29  Shewanella sp. ANA-3  Bacteria  hitchhiker  0.00121366  normal  0.225798 
 
 
-
 
NC_003909  BCE_0468  amino acid ABC transporter, amino acid-binding protein  30.31 
 
 
264 aa  129  5.0000000000000004e-29  Bacillus cereus ATCC 10987  Bacteria  normal  0.829999  n/a   
 
 
-
 
NC_008321  Shewmr4_3053  extracellular solute-binding protein  35.81 
 
 
244 aa  129  5.0000000000000004e-29  Shewanella sp. MR-4  Bacteria  hitchhiker  0.00000807518  normal  0.0316275 
 
 
-
 
NC_011658  BCAH187_A0467  putative amino acid ABC transporter, amino acid-binding protein  30.31 
 
 
264 aa  129  6e-29  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0339  amino acid ABC transporter, substrate-binding protein  30 
 
 
264 aa  128  7.000000000000001e-29  Bacillus cereus E33L  Bacteria  normal  0.140169  n/a   
 
 
-
 
NC_012850  Rleg_4079  extracellular solute-binding protein family 3  32.89 
 
 
265 aa  128  8.000000000000001e-29  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.711512  normal 
 
 
-
 
NC_008322  Shewmr7_0919  extracellular solute-binding protein  35.35 
 
 
244 aa  128  8.000000000000001e-29  Shewanella sp. MR-7  Bacteria  normal  normal  0.994657 
 
 
-
 
NC_013202  Hmuk_1692  extracellular solute-binding protein family 3  33.71 
 
 
258 aa  128  9.000000000000001e-29  Halomicrobium mukohataei DSM 12286  Archaea  normal  normal  0.350495 
 
 
-
 
NC_009438  Sputcn32_3027  extracellular solute-binding protein  35.35 
 
 
244 aa  128  9.000000000000001e-29  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0353  amino acid ABC transporter solute binding protein  29.92 
 
 
264 aa  128  1.0000000000000001e-28  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0336  amino acid ABC transporter periplasmic amino acid-binding protein  29.92 
 
 
264 aa  128  1.0000000000000001e-28  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.137288  n/a   
 
 
-
 
NC_007530  GBAA_0367  putative amino acid ABC transporter substrate-binding protein  29.92 
 
 
264 aa  128  1.0000000000000001e-28  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0402  putative amino acid ABC transporter, amino acid-binding protein  29.92 
 
 
264 aa  128  1.0000000000000001e-28  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_010184  BcerKBAB4_0348  extracellular solute-binding protein  29.53 
 
 
264 aa  127  2.0000000000000002e-28  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_010003  Pmob_1658  extracellular solute-binding protein  31.9 
 
 
243 aa  126  3e-28  Petrotoga mobilis SJ95  Bacteria  hitchhiker  0.00000026827  n/a   
 
 
-
 
NC_011989  Avi_4217  ABC type amino acid transport system periplasmic component protein  31.08 
 
 
265 aa  126  3e-28  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_3102  extracellular solute-binding protein  32.46 
 
 
269 aa  126  3e-28  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A0416  putative amino acid ABC transporter, amino acid-binding protein  29.23 
 
 
264 aa  125  5e-28  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0358  cystine transporter subunit  31.85 
 
 
265 aa  125  7e-28  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.95727 
 
 
-
 
NC_008751  Dvul_2855  extracellular solute-binding protein  34.7 
 
 
249 aa  125  7e-28  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_009616  Tmel_0470  extracellular solute-binding protein  32.28 
 
 
247 aa  125  8.000000000000001e-28  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_2798  extracellular solute-binding protein family 3  34.55 
 
 
254 aa  124  1e-27  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_009718  Fnod_1056  extracellular solute-binding protein  31.5 
 
 
250 aa  124  1e-27  Fervidobacterium nodosum Rt17-B1  Bacteria  hitchhiker  0.0000000133402  n/a   
 
 
-
 
NC_013173  Dbac_2367  extracellular solute-binding protein family 3  34.25 
 
 
246 aa  124  1e-27  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_011369  Rleg2_3756  extracellular solute-binding protein family 3  32.46 
 
 
265 aa  124  2e-27  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.720347  normal  0.831757 
 
 
-
 
NC_012856  Rpic12D_2391  extracellular solute-binding protein family 3  34.09 
 
 
254 aa  124  2e-27  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A0994  arginine ABC transporter periplasmic arginine-binding protein ArtI  35.09 
 
 
243 aa  124  2e-27  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.633483  normal 
 
 
-
 
NC_007492  Pfl01_0244  cystine transporter subunit  34.23 
 
 
266 aa  124  2e-27  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.136857  normal  0.712908 
 
 
-
 
NC_011083  SeHA_C1025  arginine ABC transporter periplasmic arginine-binding protein ArtI  35.09 
 
 
243 aa  124  2e-27  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  normal  normal 
 
 
-
 
NC_011094  SeSA_A1044  arginine ABC transporter periplasmic arginine-binding protein ArtI  35.09 
 
 
243 aa  124  2e-27  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.180668  normal 
 
 
-
 
NC_011080  SNSL254_A0962  arginine ABC transporter periplasmic arginine-binding protein ArtI  35.09 
 
 
245 aa  124  2e-27  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal 
 
 
-
 
NC_011149  SeAg_B0927  arginine ABC transporter, periplasmic arginine-binding protein ArtI  35.09 
 
 
245 aa  124  2e-27  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  n/a   
 
 
-
 
NC_007796  Mhun_0032  extracellular solute-binding protein  31.29 
 
 
276 aa  123  3e-27  Methanospirillum hungatei JF-1  Archaea  normal  0.427857  normal 
 
 
-
 
NC_012912  Dd1591_2377  cationic amino acid ABC transporter, periplasmic binding protein  35.59 
 
 
243 aa  122  4e-27  Dickeya zeae Ech1591  Bacteria  normal  0.730778  n/a   
 
 
-
 
NC_013421  Pecwa_1967  cationic amino acid ABC transporter, periplasmic binding protein  33.33 
 
 
243 aa  122  8e-27  Pectobacterium wasabiae WPP163  Bacteria  normal  0.471515  n/a   
 
 
-
 
NC_009832  Spro_2936  cystine transporter subunit  30.77 
 
 
265 aa  121  9.999999999999999e-27  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_009051  Memar_1361  extracellular solute-binding protein  32.09 
 
 
257 aa  121  9.999999999999999e-27  Methanoculleus marisnigri JR1  Archaea  normal  n/a   
 
 
-
 
NC_009436  Ent638_1379  cationic amino acid ABC transporter, periplasmic binding protein  35.53 
 
 
243 aa  121  9.999999999999999e-27  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
CP001637  EcDH1_1726  extracellular solute-binding protein family 3  32.09 
 
 
285 aa  120  1.9999999999999998e-26  Escherichia coli DH1  Bacteria  normal  0.0106098  n/a   
 
 
-
 
NC_010468  EcolC_2733  cationic amino acid ABC transporter, periplasmic binding protein  34.21 
 
 
243 aa  120  1.9999999999999998e-26  Escherichia coli ATCC 8739  Bacteria  normal  0.0727882  normal 
 
 
-
 
NC_004578  PSPTO_5180  cystine ABC transporter, periplasmic cystine binding protein  32.74 
 
 
268 aa  120  1.9999999999999998e-26  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1918  extracellular solute-binding protein family 3  33.79 
 
 
248 aa  120  1.9999999999999998e-26  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_009832  Spro_0824  extracellular solute-binding protein  33.2 
 
 
256 aa  120  1.9999999999999998e-26  Serratia proteamaculans 568  Bacteria  normal  normal  0.471601 
 
 
-
 
NC_011353  ECH74115_2694  cystine transporter subunit  31.82 
 
 
266 aa  120  1.9999999999999998e-26  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  0.520163  normal  0.0574677 
 
 
-
 
NC_013204  Elen_0237  extracellular solute-binding protein family 3  35.42 
 
 
267 aa  120  1.9999999999999998e-26  Eggerthella lenta DSM 2243  Bacteria  normal  0.640745  normal 
 
 
-
 
CP001509  ECD_00868  arginine transporter subunit  34.21 
 
 
243 aa  120  3e-26  Escherichia coli BL21(DE3)  Bacteria  normal  0.208844  n/a   
 
 
-
 
NC_010498  EcSMS35_0891  arginine ABC transporter, periplasmic arginine-binding protein ArtI  34.21 
 
 
243 aa  119  3e-26  Escherichia coli SMS-3-5  Bacteria  normal  0.437353  normal 
 
 
-
 
NC_008025  Dgeo_2189  extracellular solute-binding protein  33.73 
 
 
272 aa  120  3e-26  Deinococcus geothermalis DSM 11300  Bacteria  decreased coverage  0.000000925831  normal  0.633226 
 
 
-
 
NC_012039  Cla_0592  amino acid ABC transporter, permease/substrate-binding lipoprotein  30.27 
 
 
252 aa  120  3e-26  Campylobacter lari RM2100  Bacteria  decreased coverage  0.00000000000000143889  n/a   
 
 
-
 
NC_009800  EcHS_A0967  arginine ABC transporter, periplasmic arginine-binding protein ArtI  34.21 
 
 
243 aa  120  3e-26  Escherichia coli HS  Bacteria  normal  n/a   
 
 
-
 
NC_010658  SbBS512_E2468  arginine ABC transporter, periplasmic arginine-binding protein ArtI  34.21 
 
 
243 aa  120  3e-26  Shigella boydii CDC 3083-94  Bacteria  normal  0.381979  n/a   
 
 
-
 
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