More than 300 homologs were found in PanDaTox collection
for query gene Dde_3213 on replicon NC_007519
Organism: Desulfovibrio desulfuricans subsp. desulfuricans str. G20



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007519  Dde_3213  histone-like DNA-binding protein  100 
 
 
91 aa  183  8e-46  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_0397  histone family protein DNA-binding protein  72.53 
 
 
91 aa  141  2e-33  Desulfovibrio vulgaris DP4  Bacteria  normal  normal  0.146494 
 
 
-
 
NC_011769  DvMF_1783  histone family protein DNA-binding protein  72.53 
 
 
91 aa  141  3e-33  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  0.464491 
 
 
-
 
NC_011883  Ddes_1941  histone family protein DNA-binding protein  66.67 
 
 
91 aa  135  2e-31  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_013223  Dret_1870  histone family protein DNA-binding protein  70 
 
 
91 aa  134  5e-31  Desulfohalobium retbaense DSM 5692  Bacteria  normal  hitchhiker  0.00502599 
 
 
-
 
NC_011769  DvMF_0558  histone family protein DNA-binding protein  71.11 
 
 
91 aa  133  7.000000000000001e-31  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    hitchhiker  0.000235916 
 
 
-
 
NC_008751  Dvul_1299  histone family protein DNA-binding protein  66.67 
 
 
93 aa  131  3.9999999999999996e-30  Desulfovibrio vulgaris DP4  Bacteria  normal  0.184081  normal  0.0709018 
 
 
-
 
NC_007519  Dde_1799  histone-like DNA-binding protein  67.78 
 
 
91 aa  130  7.999999999999999e-30  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  decreased coverage  0.0000000246385  n/a   
 
 
-
 
NC_013173  Dbac_1012  histone family protein DNA-binding protein  61.11 
 
 
91 aa  128  2.0000000000000002e-29  Desulfomicrobium baculatum DSM 4028  Bacteria  hitchhiker  0.000000010655  n/a   
 
 
-
 
NC_012918  GM21_2156  histone family protein DNA-binding protein  58.89 
 
 
91 aa  109  1.0000000000000001e-23  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010814  Glov_1850  histone family protein DNA-binding protein  56.18 
 
 
93 aa  108  2.0000000000000002e-23  Geobacter lovleyi SZ  Bacteria  normal  0.30958  n/a   
 
 
-
 
NC_009483  Gura_2142  histone family protein DNA-binding protein  56.67 
 
 
91 aa  108  4.0000000000000004e-23  Geobacter uraniireducens Rf4  Bacteria  normal  0.0158969  n/a   
 
 
-
 
NC_009943  Dole_3207  histone family protein DNA-binding protein  54.44 
 
 
91 aa  107  4.0000000000000004e-23  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU1746  integration host factor, beta subunit  55.56 
 
 
92 aa  107  5e-23  Geobacter sulfurreducens PCA  Bacteria  normal  0.0216856  n/a   
 
 
-
 
NC_011146  Gbem_2060  histone family protein DNA-binding protein  57.78 
 
 
91 aa  107  7.000000000000001e-23  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_1833  histone-like DNA-binding protein  54.44 
 
 
93 aa  107  8.000000000000001e-23  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_1455  BHL, histone-like protein  53.33 
 
 
92 aa  106  1e-22  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.00000000000000108393  n/a   
 
 
-
 
NC_008554  Sfum_1425  histone family protein DNA-binding protein  55.56 
 
 
96 aa  104  5e-22  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  0.589972  normal  0.158617 
 
 
-
 
NC_013440  Hoch_3240  histone family protein DNA-binding protein  53.33 
 
 
168 aa  103  6e-22  Haliangium ochraceum DSM 14365  Bacteria  normal  0.0908312  normal  0.935864 
 
 
-
 
NC_008609  Ppro_1781  histone family protein DNA-binding protein  49.44 
 
 
91 aa  100  1e-20  Pelobacter propionicus DSM 2379  Bacteria  normal  0.88683  n/a   
 
 
-
 
NC_003909  BCE_2407  DNA-binding protein HU  44.94 
 
 
90 aa  97.8  4e-20  Bacillus cereus ATCC 10987  Bacteria  normal  0.020348  n/a   
 
 
-
 
NC_005945  BAS2213  DNA-binding protein HU  44.94 
 
 
90 aa  97.8  4e-20  Bacillus anthracis str. Sterne  Bacteria  normal  0.519209  n/a   
 
 
-
 
NC_005957  BT9727_2152  DNA-binding protein HU  44.94 
 
 
90 aa  97.8  4e-20  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0274093  n/a   
 
 
-
 
NC_006274  BCZK2136  DNA-binding protein HU  44.94 
 
 
90 aa  97.8  4e-20  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_2377  DNA-binding protein HU  44.94 
 
 
90 aa  97.8  4e-20  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2184  histone family protein DNA-binding protein  46.07 
 
 
90 aa  98.2  4e-20  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.170143  n/a   
 
 
-
 
NC_011773  BCAH820_2395  DNA-binding protein HU  44.94 
 
 
90 aa  97.8  4e-20  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011658  BCAH187_A2477  DNA-binding protein HU  44.94 
 
 
90 aa  97.8  4e-20  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B2983  DNA-binding protein HU  44.94 
 
 
90 aa  97.8  5e-20  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_011725  BCB4264_A2342  DNA-binding protein HU  44.94 
 
 
90 aa  97.8  5e-20  Bacillus cereus B4264  Bacteria  normal  0.868034  n/a   
 
 
-
 
NC_003909  BCE_3756  DNA-binding protein HU  44.94 
 
 
90 aa  96.3  1e-19  Bacillus cereus ATCC 10987  Bacteria  unclonable  0.0000000000231467  n/a   
 
 
-
 
NC_005945  BAS3574  DNA-binding protein HU  44.94 
 
 
90 aa  96.3  1e-19  Bacillus anthracis str. Sterne  Bacteria  decreased coverage  0.0000000000204463  n/a   
 
 
-
 
NC_005957  BT9727_3473  DNA-binding protein HU  44.94 
 
 
90 aa  96.3  1e-19  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  1.59147e-20  n/a   
 
 
-
 
NC_006274  BCZK3486  DNA-binding protein HU  44.94 
 
 
90 aa  96.3  1e-19  Bacillus cereus E33L  Bacteria  unclonable  0.000000000000148823  n/a   
 
 
-
 
NC_013440  Hoch_3890  histone family protein DNA-binding protein  49.44 
 
 
106 aa  96.3  1e-19  Haliangium ochraceum DSM 14365  Bacteria  hitchhiker  0.00577946  normal  0.782973 
 
 
-
 
NC_007530  GBAA_3858  DNA-binding protein HU  44.94 
 
 
90 aa  96.3  1e-19  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  unclonable  0.0000000000000587043  n/a   
 
 
-
 
NC_011773  BCAH820_3740  DNA-binding protein HU  44.94 
 
 
90 aa  96.3  1e-19  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000000000145695 
 
 
-
 
NC_011772  BCG9842_B1474  DNA-binding protein HU  44.94 
 
 
90 aa  96.3  1e-19  Bacillus cereus G9842  Bacteria  unclonable  0.000000000112809  hitchhiker  0.00000484208 
 
 
-
 
NC_011658  BCAH187_A3778  DNA-binding protein HU  44.94 
 
 
90 aa  96.3  1e-19  Bacillus cereus AH187  Bacteria  unclonable  0.000000000704337  n/a   
 
 
-
 
NC_011725  BCB4264_A3827  DNA-binding protein HU  44.94 
 
 
90 aa  96.3  1e-19  Bacillus cereus B4264  Bacteria  unclonable  0.00000818253  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3494  histone family protein DNA-binding protein  43.82 
 
 
90 aa  95.9  2e-19  Bacillus weihenstephanensis KBAB4  Bacteria  decreased coverage  0.00000668206  n/a   
 
 
-
 
NC_011145  AnaeK_0733  histone family protein DNA-binding protein  48.89 
 
 
115 aa  95.9  2e-19  Anaeromyxobacter sp. K  Bacteria  normal  0.721245  n/a   
 
 
-
 
NC_007760  Adeh_0698  histone-like DNA-binding protein  48.89 
 
 
116 aa  95.9  2e-19  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.151806  n/a   
 
 
-
 
NC_011891  A2cp1_0734  histone family protein DNA-binding protein  48.89 
 
 
115 aa  95.9  2e-19  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.15046  n/a   
 
 
-
 
NC_009674  Bcer98_2403  histone family protein DNA-binding protein  43.82 
 
 
90 aa  94.7  3e-19  Bacillus cytotoxicus NVH 391-98  Bacteria  unclonable  0.00000000237544  n/a   
 
 
-
 
NC_009675  Anae109_0740  histone family protein DNA-binding protein  47.78 
 
 
126 aa  94.4  4e-19  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_1763  histone family protein DNA-binding protein  43.82 
 
 
90 aa  94.4  5e-19  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.203917  n/a   
 
 
-
 
NC_009484  Acry_1720  integration host factor, beta subunit  47.25 
 
 
113 aa  94  6e-19  Acidiphilium cryptum JF-5  Bacteria  normal  0.191599  n/a   
 
 
-
 
NC_008576  Mmc1_2127  histone family protein DNA-binding protein  48.89 
 
 
91 aa  93.6  8e-19  Magnetococcus sp. MC-1  Bacteria  normal  0.053559  normal 
 
 
-
 
NC_010180  BcerKBAB4_5693  histone family protein DNA-binding protein  43.82 
 
 
90 aa  93.2  1e-18  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0471576  normal  0.0346696 
 
 
-
 
NC_010424  Daud_0075  histone family protein DNA-binding protein  43.82 
 
 
91 aa  93.2  1e-18  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_4105  nucleoid protein Hbs  45.56 
 
 
110 aa  92.4  2e-18  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.340401  normal 
 
 
-
 
NC_013206  Aaci_3021  histone family protein DNA-binding protein  42.22 
 
 
91 aa  92  3e-18  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0868  histone-like DNA-binding protein  50.55 
 
 
95 aa  90.5  7e-18  Geobacter metallireducens GS-15  Bacteria  normal  0.0392256  normal  0.0328691 
 
 
-
 
NC_007644  Moth_0085  nucleoid protein Hbs  43.82 
 
 
91 aa  90.5  8e-18  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0539634  normal 
 
 
-
 
NC_009140  SNSL254_pSN254_0022  DNA-binding protein HU  46.67 
 
 
90 aa  90.1  9e-18  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  hitchhiker  0.00102315  hitchhiker  0.000567997 
 
 
-
 
NC_013385  Adeg_2069  histone family protein DNA-binding protein  43.96 
 
 
95 aa  89.7  1e-17  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_0121  integration host factor, beta subunit  50.55 
 
 
102 aa  89.4  1e-17  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.879931  normal 
 
 
-
 
NC_010172  Mext_0179  integration host factor, beta subunit  50.55 
 
 
102 aa  89.4  1e-17  Methylobacterium extorquens PA1  Bacteria  normal  0.958396  normal 
 
 
-
 
NC_010725  Mpop_0204  integration host factor, beta subunit  50.55 
 
 
102 aa  89.7  1e-17  Methylobacterium populi BJ001  Bacteria  normal  0.137338  normal 
 
 
-
 
NC_008609  Ppro_1351  histone family protein DNA-binding protein  47.25 
 
 
92 aa  89  2e-17  Pelobacter propionicus DSM 2379  Bacteria  normal  0.0471037  n/a   
 
 
-
 
NC_007643  Rru_A0292  integration host factor, beta subunit  47.25 
 
 
100 aa  89  2e-17  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.167242  n/a   
 
 
-
 
NC_009012  Cthe_2657  nucleoid protein Hbs  44.44 
 
 
91 aa  89.4  2e-17  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.000194133  n/a   
 
 
-
 
NC_011898  Ccel_3085  histone family protein DNA-binding protein  43.33 
 
 
91 aa  89.4  2e-17  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.000115471  n/a   
 
 
-
 
NC_010505  Mrad2831_2444  integration host factor, beta subunit  49.45 
 
 
103 aa  88.6  2e-17  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.45625  normal 
 
 
-
 
NC_011775  BCG9842_0074  DNA-binding protein HU  41.86 
 
 
90 aa  88.6  2e-17  Bacillus cereus G9842  Bacteria  unclonable  0.00000000000481156  n/a   
 
 
-
 
NC_002939  GSU2602  DNA-binding protein HU  50.55 
 
 
96 aa  88.6  3e-17  Geobacter sulfurreducens PCA  Bacteria  normal  0.0717937  n/a   
 
 
-
 
NC_011311  VSAL_p840_28  DNA-binding protein HU-alpha  45.56 
 
 
91 aa  88.6  3e-17  Aliivibrio salmonicida LFI1238  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_3585  integration host factor subunit beta  47.25 
 
 
95 aa  88.6  3e-17  Jannaschia sp. CCS1  Bacteria  normal  0.0516176  normal 
 
 
-
 
NC_007969  Pcryo_1653  histone-like DNA-binding protein  45.56 
 
 
90 aa  88.6  3e-17  Psychrobacter cryohalolentis K5  Bacteria  unclonable  0.00000047794  unclonable  0.0000440637 
 
 
 
NC_009511  Swit_2409  histone family protein DNA-binding protein  47.25 
 
 
92 aa  88.2  3e-17  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.0906126 
 
 
-
 
NC_009524  PsycPRwf_1626  histone family protein DNA-binding protein  46.67 
 
 
90 aa  88.6  3e-17  Psychrobacter sp. PRwf-1  Bacteria  unclonable  0.00000000000133039  hitchhiker  0.00000000638901 
 
 
-
 
NC_009483  Gura_1468  histone family protein DNA-binding protein  48.35 
 
 
93 aa  88.6  3e-17  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.000686473  n/a   
 
 
-
 
NC_007204  Psyc_1474  putative DNA-binding protein HU-beta  45.56 
 
 
90 aa  88.2  4e-17  Psychrobacter arcticus 273-4  Bacteria  hitchhiker  0.0000000000000997119  hitchhiker  0.0000985943 
 
 
-
 
NC_009429  Rsph17025_3883  integration host factor subunit beta  46.15 
 
 
93 aa  87.8  4e-17  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.782365  normal  0.472078 
 
 
-
 
NC_012034  Athe_0648  histone family protein DNA-binding protein  44.94 
 
 
91 aa  87.8  5e-17  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.0000000000417185  n/a   
 
 
-
 
NC_009050  Rsph17029_3274  integration host factor subunit beta  46.15 
 
 
93 aa  87.8  5e-17  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.333041 
 
 
-
 
NC_007494  RSP_3589  integration host factor subunit beta  46.15 
 
 
93 aa  87.4  5e-17  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.201155  n/a   
 
 
-
 
NC_011777  BCAH820_B0184  DNA-binding protein HU 1  41.57 
 
 
90 aa  87.4  6e-17  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_010511  M446_2501  integration host factor, beta subunit  48.35 
 
 
106 aa  87.4  6e-17  Methylobacterium sp. 4-46  Bacteria  normal  0.201217  normal 
 
 
-
 
NC_008347  Mmar10_0097  integration host factor, beta subunit  48.35 
 
 
101 aa  87.4  6e-17  Maricaulis maris MCS10  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_3672  integration host factor, beta subunit  48.35 
 
 
94 aa  87  8e-17  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011311  VSAL_p840_66  DNA-binding protein HU-alpha  47.25 
 
 
91 aa  87  8e-17  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.0113448  n/a   
 
 
-
 
NC_009720  Xaut_2219  integration host factor subunit beta  50.55 
 
 
94 aa  86.7  9e-17  Xanthobacter autotrophicus Py2  Bacteria  normal  0.0365391  normal  0.362428 
 
 
-
 
NC_009253  Dred_0115  histone family protein DNA-binding protein  43.82 
 
 
95 aa  86.7  9e-17  Desulfotomaculum reducens MI-1  Bacteria  normal  0.552761  n/a   
 
 
-
 
NC_011655  BCAH187_C0183  DNA-binding protein HU 1  40.45 
 
 
90 aa  86.3  1e-16  Bacillus cereus AH187  Bacteria  hitchhiker  0.0000296943  hitchhiker  2.26878e-36 
 
 
-
 
NC_007406  Nwi_0058  integration host factor subunit beta  48.35 
 
 
101 aa  86.7  1e-16  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.0950435  normal  0.185512 
 
 
-
 
NC_007484  Noc_1772  histone-like DNA-binding protein  42.22 
 
 
90 aa  86.3  1e-16  Nitrosococcus oceani ATCC 19707  Bacteria  decreased coverage  0.000757515  n/a   
 
 
-
 
NC_009719  Plav_0147  integration host factor, beta subunit  48.35 
 
 
110 aa  86.3  1e-16  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_0066  integration host factor subunit beta  48.35 
 
 
101 aa  86.7  1e-16  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_008048  Sala_1496  histone-like DNA-binding protein  46.15 
 
 
92 aa  86.7  1e-16  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.963172  normal  0.198293 
 
 
-
 
NC_013422  Hneap_0390  histone family protein DNA-binding protein  41.11 
 
 
90 aa  86.3  1e-16  Halothiobacillus neapolitanus c2  Bacteria  decreased coverage  0.0000165854  n/a   
 
 
-
 
NC_002977  MCA0532  DNA-binding protein HU-beta  42.22 
 
 
90 aa  85.5  2e-16  Methylococcus capsulatus str. Bath  Bacteria  decreased coverage  0.00043104  n/a   
 
 
-
 
NC_011725  BCB4264_A1566  DNA-binding protein HU  41.57 
 
 
90 aa  85.5  2e-16  Bacillus cereus B4264  Bacteria  normal  0.236067  n/a   
 
 
-
 
NC_009636  Smed_0021  integration host factor subunit beta  47.83 
 
 
103 aa  85.5  2e-16  Sinorhizobium medicae WSM419  Bacteria  normal  hitchhiker  0.00013194 
 
 
-
 
NC_007530  GBAA_1531  DNA-binding protein HU  41.57 
 
 
90 aa  85.5  2e-16  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.259543  n/a   
 
 
-
 
NC_011894  Mnod_2198  integration host factor, beta subunit  48.35 
 
 
106 aa  85.9  2e-16  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_0638  integration host factor subunit beta  48.35 
 
 
101 aa  85.9  2e-16  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.0567003 
 
 
-
 
NC_011772  BCG9842_B3779  DNA-binding protein HU  41.57 
 
 
90 aa  85.5  2e-16  Bacillus cereus G9842  Bacteria  decreased coverage  0.000354145  normal  0.961445 
 
 
-
 
NC_010002  Daci_4725  integration host factor, beta subunit  46.15 
 
 
113 aa  85.9  2e-16  Delftia acidovorans SPH-1  Bacteria  normal  0.929388  normal 
 
 
-
 
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