More than 300 homologs were found in PanDaTox collection
for query gene Dde_0071 on replicon NC_007519
Organism: Desulfovibrio desulfuricans subsp. desulfuricans str. G20



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007519  Dde_0071  response regulator receiver domain-containing protein  100 
 
 
139 aa  277  3e-74  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_003912  CJE1261  chemotaxis protein CheY  30.89 
 
 
130 aa  82.8  0.000000000000001  Campylobacter jejuni RM1221  Bacteria  normal  0.0812291  n/a   
 
 
-
 
NC_009707  JJD26997_0603  chemotaxis protein CheY  30.89 
 
 
130 aa  82.8  0.000000000000001  Campylobacter jejuni subsp. doylei 269.97  Bacteria  normal  n/a   
 
 
-
 
NC_008787  CJJ81176_1136  chemotaxis protein CheY  30.89 
 
 
130 aa  82.8  0.000000000000001  Campylobacter jejuni subsp. jejuni 81-176  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_1723  diguanylate cyclase  35.9 
 
 
420 aa  82  0.000000000000003  Shewanella sediminis HAW-EB3  Bacteria  normal  0.428268  hitchhiker  0.00000158997 
 
 
-
 
NC_012039  Cla_1259  chemotaxis protein CheY  30.89 
 
 
125 aa  80.5  0.000000000000007  Campylobacter lari RM2100  Bacteria  normal  0.529849  n/a   
 
 
-
 
NC_007604  Synpcc7942_1815  response regulator receiver domain-containing protein  36.97 
 
 
411 aa  80.1  0.000000000000008  Synechococcus elongatus PCC 7942  Bacteria  normal  0.800608  normal  0.49797 
 
 
-
 
NC_009802  CCC13826_1984  threonine dehydratase  37.82 
 
 
418 aa  79.7  0.00000000000001  Campylobacter concisus 13826  Bacteria  normal  0.241676  n/a   
 
 
-
 
NC_009719  Plav_2050  two component, sigma54 specific, Fis family transcriptional regulator  36.67 
 
 
511 aa  79.3  0.00000000000001  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.155124  hitchhiker  0.000156568 
 
 
-
 
NC_007519  Dde_0178  response regulator receiver domain-containing protein  34.19 
 
 
272 aa  78.2  0.00000000000003  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_007575  Suden_1672  response regulator receiver domain-containing protein  33.04 
 
 
124 aa  78.6  0.00000000000003  Sulfurimonas denitrificans DSM 1251  Bacteria  normal  0.494239  n/a   
 
 
-
 
NC_011726  PCC8801_4288  CheA signal transduction histidine kinase  35.83 
 
 
911 aa  78.2  0.00000000000004  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_4348  CheA signal transduction histidine kinase  35.83 
 
 
911 aa  78.2  0.00000000000004  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.485697 
 
 
-
 
NC_011769  DvMF_3074  response regulator receiver modulated metal dependent phosphohydrolase  37.4 
 
 
363 aa  77.4  0.00000000000007  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_007796  Mhun_1438  putative PAS/PAC sensor protein  38.18 
 
 
393 aa  77.4  0.00000000000007  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.92182 
 
 
-
 
NC_009439  Pmen_0478  response regulator receiver modulated diguanylate cyclase  36.75 
 
 
422 aa  77  0.00000000000008  Pseudomonas mendocina ymp  Bacteria  normal  0.60604  normal 
 
 
-
 
NC_013522  Taci_0357  CheA signal transduction histidine kinase  38.24 
 
 
695 aa  76.3  0.0000000000001  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_0843  response regulator receiver protein  34.75 
 
 
251 aa  75.5  0.0000000000002  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  hitchhiker  0.00000594696  n/a   
 
 
-
 
NC_009901  Spea_1684  response regulator receiver modulated diguanylate cyclase  35 
 
 
400 aa  75.9  0.0000000000002  Shewanella pealeana ATCC 700345  Bacteria  normal  0.16221  n/a   
 
 
-
 
NC_009715  CCV52592_1198  putative chemotaxis protein CheY-like protein  30.51 
 
 
139 aa  75.9  0.0000000000002  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_008347  Mmar10_2539  two component, sigma54 specific, Fis family transcriptional regulator  33.9 
 
 
487 aa  75.5  0.0000000000002  Maricaulis maris MCS10  Bacteria  normal  0.846517  normal 
 
 
-
 
NC_010814  Glov_1694  two component, sigma54 specific, transcriptional regulator, Fis family  34.75 
 
 
472 aa  75.1  0.0000000000003  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007604  Synpcc7942_1860  two component LuxR family transcriptional regulator  37.82 
 
 
235 aa  75.1  0.0000000000003  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_009364  OSTLU_38278  predicted protein  31.3 
 
 
145 aa  75.1  0.0000000000003  Ostreococcus lucimarinus CCE9901  Eukaryota  normal  0.449429  normal 
 
 
-
 
NC_013512  Sdel_1763  response regulator receiver  28.81 
 
 
121 aa  75.1  0.0000000000003  Sulfurospirillum deleyianum DSM 6946  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_0339  PAS/PAC sensor hybrid histidine kinase  35.94 
 
 
1390 aa  75.1  0.0000000000003  Mycobacterium sp. JLS  Bacteria  normal  0.726297  normal  0.77171 
 
 
-
 
NC_008146  Mmcs_0350  PAS/PAC sensor hybrid histidine kinase  35.94 
 
 
1390 aa  75.1  0.0000000000003  Mycobacterium sp. MCS  Bacteria  normal  0.0937102  n/a   
 
 
-
 
NC_008705  Mkms_0360  PAS/PAC sensor hybrid histidine kinase  35.94 
 
 
1390 aa  75.1  0.0000000000003  Mycobacterium sp. KMS  Bacteria  normal  normal  0.592677 
 
 
-
 
NC_008740  Maqu_0670  two component, sigma54 specific, Fis family transcriptional regulator  37.7 
 
 
464 aa  75.1  0.0000000000003  Marinobacter aquaeolei VT8  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0961  integral membrane sensor hybrid histidine kinase  34.45 
 
 
1154 aa  74.7  0.0000000000004  Marinomonas sp. MWYL1  Bacteria  normal  0.544458  normal 
 
 
-
 
NC_013173  Dbac_2856  response regulator receiver protein  32.5 
 
 
137 aa  74.3  0.0000000000005  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_010320  Teth514_2061  response regulator receiver modulated diguanylate cyclase  34.45 
 
 
318 aa  74.3  0.0000000000005  Thermoanaerobacter sp. X514  Bacteria  hitchhiker  0.0000000365539  n/a   
 
 
-
 
NC_009715  CCV52592_0462  3-deoxy-d-manno-octulosonic-acid transferase  37.29 
 
 
422 aa  74.3  0.0000000000005  Campylobacter curvus 525.92  Bacteria  normal  n/a   
 
 
-
 
NC_010581  Bind_0364  multi-sensor hybrid histidine kinase  31.85 
 
 
1013 aa  73.9  0.0000000000006  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_3647  two component, sigma-54 specific, Fis family transcriptional regulator  38.14 
 
 
471 aa  73.9  0.0000000000006  Geobacter uraniireducens Rf4  Bacteria  normal  0.0209004  n/a   
 
 
-
 
NC_011369  Rleg2_3295  two component, sigma54 specific, transcriptional regulator, Fis family  30.51 
 
 
514 aa  73.6  0.0000000000008  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.836784  normal 
 
 
-
 
NC_007796  Mhun_2691  putative PAS/PAC sensor protein  36.28 
 
 
385 aa  73.6  0.0000000000008  Methanospirillum hungatei JF-1  Archaea  normal  normal  0.10412 
 
 
-
 
NC_012850  Rleg_3596  two component, sigma54 specific, transcriptional regulator, Fis family  30.51 
 
 
515 aa  73.6  0.0000000000008  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.363783 
 
 
-
 
NC_009921  Franean1_6993  GAF sensor hybrid histidine kinase  35.59 
 
 
1159 aa  73.9  0.0000000000008  Frankia sp. EAN1pec  Bacteria  normal  0.922616  normal 
 
 
-
 
NC_009654  Mmwyl1_1933  response regulator receiver modulated diguanylate cyclase  34.82 
 
 
411 aa  73.6  0.0000000000008  Marinomonas sp. MWYL1  Bacteria  normal  0.380329  normal 
 
 
-
 
NC_009511  Swit_3187  response regulator receiver protein  36.21 
 
 
136 aa  72.8  0.000000000001  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_014212  Mesil_0841  two component transcriptional regulator, winged helix family  36.67 
 
 
223 aa  73.2  0.000000000001  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_009802  CCC13826_0443  lipoprotein  29.66 
 
 
121 aa  73.2  0.000000000001  Campylobacter concisus 13826  Bacteria  normal  0.81181  n/a   
 
 
-
 
NC_007778  RPB_0182  response regulator receiver domain-containing protein  35.43 
 
 
129 aa  72.8  0.000000000001  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.622103  normal 
 
 
-
 
NC_010511  M446_1528  adenylate/guanylate cyclase  33.33 
 
 
350 aa  72.8  0.000000000001  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_008740  Maqu_2223  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  36.67 
 
 
725 aa  72.8  0.000000000001  Marinobacter aquaeolei VT8  Bacteria  normal  0.847933  n/a   
 
 
-
 
NC_008609  Ppro_3108  two component, sigma54 specific, Fis family transcriptional regulator  33.33 
 
 
461 aa  73.2  0.000000000001  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_013205  Aaci_0044  two component transcriptional regulator, winged helix family  33.33 
 
 
224 aa  72.4  0.000000000002  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_0831  response regulator receiver:sigma-54 factor, interaction region  32.37 
 
 
494 aa  72.4  0.000000000002  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  hitchhiker  0.00148287 
 
 
-
 
NC_007492  Pfl01_4808  two-component response regulator CbrB  35 
 
 
478 aa  72.4  0.000000000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.069592  hitchhiker  0.0095877 
 
 
-
 
NC_009943  Dole_0990  CheA signal transduction histidine kinase  33.87 
 
 
1085 aa  72.4  0.000000000002  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_011831  Cagg_2396  response regulator receiver protein  35 
 
 
126 aa  72.4  0.000000000002  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.612966  normal  0.464694 
 
 
-
 
NC_007925  RPC_3976  two component, sigma54 specific, Fis family transcriptional regulator  35.25 
 
 
500 aa  72  0.000000000002  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.833176 
 
 
-
 
NC_009943  Dole_2174  response regulator receiver modulated metal dependent phosphohydrolase  31.36 
 
 
474 aa  72.4  0.000000000002  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_2296  response regulator receiver sensor signal transduction histidine kinase  30 
 
 
394 aa  72.8  0.000000000002  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_009675  Anae109_1105  two component, sigma54 specific, Fis family transcriptional regulator  32.5 
 
 
475 aa  72.4  0.000000000002  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.926771  normal  0.835973 
 
 
-
 
NC_010676  Bphyt_6236  multi-sensor signal transduction histidine kinase  34.71 
 
 
553 aa  71.6  0.000000000003  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.914679 
 
 
-
 
NC_010803  Clim_1831  multi-sensor signal transduction histidine kinase  33.61 
 
 
685 aa  71.6  0.000000000003  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1114  two component, sigma54 specific, transcriptional regulator, Fis family  32.77 
 
 
501 aa  72  0.000000000003  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_2563  periplasmic sensor hybrid histidine kinase  31.93 
 
 
935 aa  72  0.000000000003  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.851477 
 
 
-
 
NC_011891  A2cp1_2773  CheA signal transduction histidine kinase  34.75 
 
 
705 aa  71.6  0.000000000003  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  decreased coverage  0.00107192  n/a   
 
 
-
 
NC_007517  Gmet_2312  response regulator receiver domain-containing protein  35.25 
 
 
121 aa  72  0.000000000003  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_2987  LuxR family two component transcriptional regulator  32.26 
 
 
231 aa  72  0.000000000003  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1055  two component, sigma54 specific, Fis family transcriptional regulator  32.77 
 
 
481 aa  72  0.000000000003  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.874499  n/a   
 
 
-
 
NC_011884  Cyan7425_3210  response regulator receiver modulated diguanylate cyclase  37.27 
 
 
337 aa  71.6  0.000000000003  Cyanothece sp. PCC 7425  Bacteria  normal  0.32327  normal  0.712325 
 
 
-
 
NC_011891  A2cp1_1183  two component, sigma54 specific, transcriptional regulator, Fis family  32.77 
 
 
481 aa  71.6  0.000000000003  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_4035  CheA signal transduction histidine kinase  35.85 
 
 
921 aa  71.6  0.000000000003  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.703964  normal  0.275969 
 
 
-
 
NC_008609  Ppro_1380  response regulator receiver modulated diguanylate cyclase  34.17 
 
 
454 aa  72  0.000000000003  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.00781234  n/a   
 
 
-
 
NC_012918  GM21_0754  response regulator receiver protein  33.88 
 
 
121 aa  71.2  0.000000000004  Geobacter sp. M21  Bacteria  n/a    hitchhiker  0.00160234 
 
 
-
 
NC_011146  Gbem_0739  response regulator receiver protein  33.88 
 
 
121 aa  71.2  0.000000000004  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_5544  histidine kinase  33.33 
 
 
1306 aa  71.2  0.000000000004  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.122286  normal 
 
 
-
 
NC_009943  Dole_2401  two component, sigma54 specific, Fis family transcriptional regulator  34.19 
 
 
449 aa  71.6  0.000000000004  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_2360  response regulator receiver protein  33.33 
 
 
523 aa  71.2  0.000000000004  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_3147  response regulator receiver protein  33.88 
 
 
121 aa  71.2  0.000000000004  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_3589  two-component response regulator CbrB  34.17 
 
 
477 aa  71.2  0.000000000004  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_3443  response regulator receiver protein  32.23 
 
 
223 aa  71.6  0.000000000004  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_009783  VIBHAR_01282  hypothetical protein  33.87 
 
 
308 aa  70.9  0.000000000005  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_014248  Aazo_4464  integral membrane sensor hybrid histidine kinase  32.5 
 
 
945 aa  70.9  0.000000000005  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_2480  PAS/PAC sensor hybrid histidine kinase  33.9 
 
 
846 aa  71.2  0.000000000005  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.0000000921222 
 
 
-
 
NC_009943  Dole_2807  two component, sigma54 specific, Fis family transcriptional regulator  33.06 
 
 
466 aa  70.9  0.000000000006  Desulfococcus oleovorans Hxd3  Bacteria  normal  0.75933  n/a   
 
 
-
 
NC_014148  Plim_1910  response regulator receiver  35.43 
 
 
122 aa  70.9  0.000000000006  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.0109911  n/a   
 
 
-
 
NC_002939  GSU0598  sigma-54 dependent DNA-binding response regulator  37.29 
 
 
470 aa  70.5  0.000000000007  Geobacter sulfurreducens PCA  Bacteria  normal  0.885444  n/a   
 
 
-
 
NC_009485  BBta_2152  putative response regulator, putative serine phosphatase  32.73 
 
 
434 aa  70.5  0.000000000007  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_2256  response regulator receiver protein  34.55 
 
 
128 aa  70.5  0.000000000007  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_010506  Swoo_2855  response regulator receiver modulated diguanylate cyclase  34.75 
 
 
415 aa  70.5  0.000000000007  Shewanella woodyi ATCC 51908  Bacteria  normal  0.220747  hitchhiker  0.000676798 
 
 
-
 
NC_008346  Swol_0600  response regulator receiver protein  34.55 
 
 
301 aa  70.5  0.000000000007  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2678  CheA signal transduction histidine kinase  33.9 
 
 
705 aa  70.5  0.000000000007  Anaeromyxobacter sp. K  Bacteria  normal  0.295272  n/a   
 
 
-
 
NC_011729  PCC7424_1961  CheA signal transduction histidine kinase  36.13 
 
 
1057 aa  70.5  0.000000000007  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008599  CFF8240_1193  diguanylate cyclase  31.78 
 
 
415 aa  70.5  0.000000000007  Campylobacter fetus subsp. fetus 82-40  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_0964  sigma-54 dependent transcriptional regulator/response regulator  34.17 
 
 
478 aa  70.5  0.000000000008  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_4952  response regulator receiver protein  34.17 
 
 
121 aa  70.5  0.000000000008  'Nostoc azollae' 0708  Bacteria  normal  0.699568  n/a   
 
 
-
 
NC_012560  Avin_42680  sigma54-dependent response regulator, CbrB  34.71 
 
 
466 aa  70.5  0.000000000008  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_011059  Paes_1430  multi-sensor signal transduction histidine kinase  32.77 
 
 
737 aa  70.5  0.000000000008  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal  0.224344 
 
 
-
 
NC_008751  Dvul_2852  response regulator receiver protein  32.76 
 
 
268 aa  70.1  0.000000000009  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_0301  two component LuxR family transcriptional regulator  30.65 
 
 
231 aa  70.1  0.000000000009  Anabaena variabilis ATCC 29413  Bacteria  normal  0.54347  normal 
 
 
-
 
NC_009620  Smed_3762  putative adenylate/guanylate cyclase  34.19 
 
 
520 aa  70.1  0.000000000009  Sinorhizobium medicae WSM419  Bacteria  normal  0.978534  normal 
 
 
-
 
NC_014248  Aazo_2338  GAF sensor-containing adenylate/guanylate cyclase  30.83 
 
 
1180 aa  70.1  0.000000000009  'Nostoc azollae' 0708  Bacteria  normal  0.0263037  n/a   
 
 
-
 
NC_010505  Mrad2831_0215  adenylate/guanylate cyclase  32.48 
 
 
351 aa  69.7  0.00000000001  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.354021  normal 
 
 
-
 
NC_007912  Sde_1112  response regulator receiver domain-containing protein  38.14 
 
 
399 aa  69.7  0.00000000001  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_2977  response regulator receiver domain-containing protein  36.36 
 
 
303 aa  69.7  0.00000000001  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.13601 
 
 
-
 
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