More than 300 homologs were found in PanDaTox collection
for query gene Daci_1379 on replicon NC_010002
Organism: Delftia acidovorans SPH-1



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010002  Daci_1379  Crp/FNR family transcriptional regulator  100 
 
 
245 aa  490  9.999999999999999e-139  Delftia acidovorans SPH-1  Bacteria  normal  0.231738  normal 
 
 
-
 
NC_013456  VEA_003082  transcriptional regulator Crp/Fnr family  25.58 
 
 
231 aa  87.4  2e-16  Vibrio sp. Ex25  Bacteria  hitchhiker  0.00863529  n/a   
 
 
-
 
NC_013510  Tcur_2257  transcriptional regulator, Crp/Fnr family  31.49 
 
 
234 aa  82  0.000000000000008  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00000784359  n/a   
 
 
-
 
NC_008782  Ajs_1058  CRP/FNR family transcriptional regulator  32.71 
 
 
258 aa  82  0.000000000000009  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_0976  transcriptional regulator, Crp/Fnr family  32.71 
 
 
258 aa  82  0.000000000000009  Acidovorax ebreus TPSY  Bacteria  normal  0.859751  n/a   
 
 
-
 
NC_007973  Rmet_0213  cyclic nucleotide-binding protein  26.43 
 
 
259 aa  81.3  0.00000000000001  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_3367  Crp/FNR family transcriptional regulator  29.73 
 
 
230 aa  81.3  0.00000000000001  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008391  Bamb_3712  cyclic nucleotide-binding protein  29.61 
 
 
259 aa  81.6  0.00000000000001  Burkholderia ambifaria AMMD  Bacteria  normal  0.971291  normal 
 
 
-
 
NC_010002  Daci_4881  Crp/FNR family transcriptional regulator  29.55 
 
 
278 aa  81.6  0.00000000000001  Delftia acidovorans SPH-1  Bacteria  normal  0.484233  normal 
 
 
-
 
NC_010552  BamMC406_4190  cyclic nucleotide-binding protein  32.35 
 
 
262 aa  80.1  0.00000000000003  Burkholderia ambifaria MC40-6  Bacteria  normal  0.456577  normal 
 
 
-
 
NC_010086  Bmul_4311  cyclic nucleotide-binding protein  31.61 
 
 
285 aa  80.1  0.00000000000003  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0853188  normal  0.342841 
 
 
-
 
NC_007492  Pfl01_0199  Crp/FNR family transcriptional regulator  31.61 
 
 
227 aa  79.3  0.00000000000006  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_0351  putative transcriptional regulator  30.64 
 
 
228 aa  79  0.00000000000008  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_4353  CRP/FNR family transcriptional regulator  30.36 
 
 
227 aa  78.6  0.00000000000009  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_03580  putative transcriptional regulator  31.21 
 
 
228 aa  77.8  0.0000000000001  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  decreased coverage  0.000980911  hitchhiker  0.0000000000977836 
 
 
-
 
NC_010676  Bphyt_7045  transcriptional regulator, Crp/Fnr family  25.88 
 
 
237 aa  76.6  0.0000000000003  Burkholderia phytofirmans PsJN  Bacteria  normal  0.601598  normal  0.0108856 
 
 
-
 
NC_009511  Swit_4116  CRP/FNR family transcriptional regulator  28.36 
 
 
205 aa  75.5  0.0000000000007  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_007511  Bcep18194_B1725  cyclic nucleotide-binding domain-containing protein  27.66 
 
 
251 aa  75.1  0.0000000000009  Burkholderia sp. 383  Bacteria  normal  0.134143  normal 
 
 
-
 
NC_007347  Reut_A0259  cyclic nucleotide-binding protein  29.07 
 
 
222 aa  75.1  0.000000000001  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II1687  cyclic nucleotide-binding domain-containing protein  31.76 
 
 
299 aa  74.3  0.000000000002  Burkholderia thailandensis E264  Bacteria  normal  0.535238  n/a   
 
 
-
 
NC_007952  Bxe_B0027  Crp/FNR family transcriptional regulator  27.23 
 
 
237 aa  74.3  0.000000000002  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_2665  Crp/FNR family transcriptional regulator  29.52 
 
 
239 aa  74.3  0.000000000002  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0675619  normal  0.290328 
 
 
-
 
NC_010681  Bphyt_1092  transcriptional regulator, Crp/Fnr family  24.65 
 
 
234 aa  73.2  0.000000000003  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_4072  cyclic nucleotide-binding protein  28.51 
 
 
247 aa  72.8  0.000000000005  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.426596  n/a   
 
 
-
 
NC_008543  Bcen2424_4294  cyclic nucleotide-binding protein  28.51 
 
 
247 aa  72.8  0.000000000005  Burkholderia cenocepacia HI2424  Bacteria  normal  0.803161  normal  0.987027 
 
 
-
 
NC_010524  Lcho_3433  Crp/FNR family transcriptional regulator  28.32 
 
 
251 aa  72.8  0.000000000005  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.00135571 
 
 
-
 
NC_012669  Bcav_0608  transcriptional regulator, Crp/Fnr family  29.57 
 
 
225 aa  72.4  0.000000000006  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.847542  normal 
 
 
-
 
NC_010515  Bcenmc03_3223  cyclic nucleotide-binding protein  28.51 
 
 
247 aa  72.4  0.000000000006  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.319468 
 
 
-
 
NC_003910  CPS_2085  cyclic nucleotide binding protein  23.72 
 
 
238 aa  72  0.000000000008  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_0755  Crp/FNR family transcriptional regulator  29.26 
 
 
235 aa  72  0.000000000008  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.027549  normal  0.149867 
 
 
-
 
NC_003296  RS01902  putative transcription regulator protein  31.02 
 
 
239 aa  71.2  0.00000000001  Ralstonia solanacearum GMI1000  Bacteria  normal  0.980965  normal  0.145891 
 
 
-
 
NC_006349  BMAA1395  cyclic nucleotide-binding domain-containing protein  30.59 
 
 
304 aa  71.6  0.00000000001  Burkholderia mallei ATCC 23344  Bacteria  normal  0.553188  n/a   
 
 
-
 
NC_007952  Bxe_B2783  cyclic nucleotide-binding domain-containing protein  30.54 
 
 
248 aa  71.6  0.00000000001  Burkholderia xenovorans LB400  Bacteria  normal  0.778441  normal 
 
 
-
 
NC_011138  MADE_01198  cyclic nucleotide-binding protein  25.63 
 
 
229 aa  71.6  0.00000000001  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_0137  cyclic nucleotide-binding domain-containing protein  30.59 
 
 
284 aa  70.9  0.00000000002  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A2305  cyclic nucleotide-binding domain-containing protein  30.59 
 
 
309 aa  70.9  0.00000000002  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008781  Pnap_3605  CRP/FNR family transcriptional regulator  29.41 
 
 
235 aa  70.5  0.00000000002  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal  0.391558 
 
 
-
 
NC_008784  BMASAVP1_0510  cyclic nucleotide-binding domain-containing protein  30.59 
 
 
284 aa  70.9  0.00000000002  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A1475  cyclic nucleotide-binding protein  30.59 
 
 
284 aa  70.9  0.00000000002  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008782  Ajs_1779  Crp/FNR family transcriptional regulator  24.56 
 
 
239 aa  70.9  0.00000000002  Acidovorax sp. JS42  Bacteria  normal  0.72161  normal 
 
 
-
 
NC_009078  BURPS1106A_A0992  cyclic nucleotide-binding domain-containing protein  30.59 
 
 
289 aa  70.5  0.00000000002  Burkholderia pseudomallei 1106a  Bacteria  normal  0.0799157  n/a   
 
 
-
 
NC_007510  Bcep18194_A5872  Crp/FNR family transcriptional regulator  28.35 
 
 
235 aa  70.1  0.00000000003  Burkholderia sp. 383  Bacteria  normal  0.142608  normal  0.264846 
 
 
-
 
NC_010508  Bcenmc03_2565  Crp/FNR family transcriptional regulator  26.76 
 
 
235 aa  70.1  0.00000000003  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0695171  normal  0.0307054 
 
 
-
 
NC_009075  BURPS668_A1075  cyclic nucleotide-binding protein  30.59 
 
 
281 aa  70.1  0.00000000003  Burkholderia pseudomallei 668  Bacteria  normal  0.179519  n/a   
 
 
-
 
NC_007974  Rmet_4243  Crp/Fnr family transcriptional regulator  26.67 
 
 
305 aa  70.1  0.00000000003  Cupriavidus metallidurans CH34  Bacteria  normal  normal  0.286118 
 
 
-
 
NC_012857  Rpic12D_4617  transcriptional regulator, Crp/Fnr family  30.92 
 
 
243 aa  70.1  0.00000000003  Ralstonia pickettii 12D  Bacteria  normal  0.652735  normal 
 
 
-
 
NC_008786  Veis_4308  cyclic nucleotide-binding protein  23.66 
 
 
239 aa  70.1  0.00000000003  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0411784  normal 
 
 
-
 
NC_010678  Rpic_4483  transcriptional regulator, Crp/Fnr family  30.92 
 
 
243 aa  70.1  0.00000000003  Ralstonia pickettii 12J  Bacteria  normal  normal  0.183908 
 
 
-
 
NC_007651  BTH_I0747  transcriptional regulator, putative  29.83 
 
 
266 aa  69.7  0.00000000004  Burkholderia thailandensis E264  Bacteria  normal  0.59923  n/a   
 
 
-
 
NC_013595  Sros_8981  putative transcriptional regulator, Crp/Fnr family  29.95 
 
 
222 aa  69.7  0.00000000004  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_0775  Crp/FNR family transcriptional regulator  29.76 
 
 
237 aa  69.3  0.00000000005  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_2084  cyclic nucleotide-binding  27.42 
 
 
230 aa  68.9  0.00000000006  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2266  transcriptional regulator, putative  28.7 
 
 
251 aa  68.9  0.00000000007  Burkholderia mallei ATCC 23344  Bacteria  normal  0.578468  n/a   
 
 
-
 
NC_007434  BURPS1710b_1089  cyclic nucleotide-binding protein  28.7 
 
 
251 aa  68.9  0.00000000007  Burkholderia pseudomallei 1710b  Bacteria  normal  0.30583  n/a   
 
 
-
 
NC_009076  BURPS1106A_0938  cyclic nucleotide-binding protein  28.7 
 
 
251 aa  68.9  0.00000000007  Burkholderia pseudomallei 1106a  Bacteria  normal  0.914927  n/a   
 
 
-
 
NC_009074  BURPS668_0934  cyclic nucleotide-binding  28.7 
 
 
251 aa  68.9  0.00000000007  Burkholderia pseudomallei 668  Bacteria  normal  0.059861  n/a   
 
 
-
 
NC_009080  BMA10247_2143  putative transcriptional regulator  28.7 
 
 
251 aa  68.9  0.00000000007  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_5005  transcriptional regulator, Crp/Fnr family  29.41 
 
 
261 aa  68.9  0.00000000008  Variovorax paradoxus S110  Bacteria  normal  0.62031  n/a   
 
 
-
 
NC_007948  Bpro_2959  Crp/FNR family transcriptional regulator  23.79 
 
 
241 aa  68.6  0.00000000008  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_1943  transcriptional regulator, Crp/Fnr family  24.12 
 
 
239 aa  68.6  0.00000000008  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_008025  Dgeo_1275  Crp/FNR family transcriptional regulator  28.97 
 
 
230 aa  68.6  0.00000000008  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal  0.651323 
 
 
-
 
NC_012791  Vapar_2630  transcriptional regulator, Crp/Fnr family  23.79 
 
 
239 aa  68.6  0.00000000009  Variovorax paradoxus S110  Bacteria  decreased coverage  0.00642792  n/a   
 
 
-
 
NC_007948  Bpro_0605  Crp/FNR family transcriptional regulator  28.24 
 
 
252 aa  68.2  0.0000000001  Polaromonas sp. JS666  Bacteria  hitchhiker  0.00101565  normal 
 
 
-
 
NC_011004  Rpal_4520  transcriptional regulator, Crp/Fnr family  25.13 
 
 
236 aa  67.8  0.0000000001  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_008060  Bcen_1929  Crp/FNR family transcriptional regulator  26.94 
 
 
235 aa  68.2  0.0000000001  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.589711  n/a   
 
 
-
 
NC_008390  Bamb_2589  Crp/FNR family transcriptional regulator  26.98 
 
 
235 aa  68.2  0.0000000001  Burkholderia ambifaria AMMD  Bacteria  normal  0.0679634  n/a   
 
 
-
 
NC_008542  Bcen2424_2541  Crp/FNR family transcriptional regulator  26.94 
 
 
235 aa  68.2  0.0000000001  Burkholderia cenocepacia HI2424  Bacteria  hitchhiker  0.000812643  n/a   
 
 
-
 
NC_010676  Bphyt_6768  cyclic nucleotide-binding protein  29.34 
 
 
248 aa  67.8  0.0000000002  Burkholderia phytofirmans PsJN  Bacteria  normal  0.1826  normal  0.270362 
 
 
-
 
NC_010551  BamMC406_2459  Crp/FNR family transcriptional regulator  27.44 
 
 
235 aa  67.4  0.0000000002  Burkholderia ambifaria MC40-6  Bacteria  normal  hitchhiker  0.0000341213 
 
 
-
 
NC_013440  Hoch_1697  transcriptional regulator, Crp/Fnr family  28.64 
 
 
259 aa  67  0.0000000003  Haliangium ochraceum DSM 14365  Bacteria  normal  0.314621  hitchhiker  0.0000199045 
 
 
-
 
NC_009668  Oant_4381  CRP/FNR family transcriptional regulator  23.7 
 
 
231 aa  67  0.0000000003  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_010682  Rpic_3408  transcriptional regulator, Crp/Fnr family  27.8 
 
 
243 aa  66.2  0.0000000004  Ralstonia pickettii 12J  Bacteria  normal  normal  0.258046 
 
 
-
 
NC_009523  RoseRS_0595  CRP/FNR family transcriptional regulator  25.79 
 
 
228 aa  66.2  0.0000000004  Roseiflexus sp. RS-1  Bacteria  normal  0.130469  unclonable  0.00000708114 
 
 
-
 
NC_010002  Daci_2132  Crp/FNR family transcriptional regulator  27.6 
 
 
231 aa  65.9  0.0000000005  Delftia acidovorans SPH-1  Bacteria  decreased coverage  0.00647195  normal  0.364317 
 
 
-
 
NC_004311  BRA0262  Crp/FNR family transcriptional regulator  25.43 
 
 
231 aa  65.9  0.0000000006  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B4045  GntR family transcriptional regulator  32.22 
 
 
260 aa  65.9  0.0000000006  Ralstonia eutropha JMP134  Bacteria  normal  0.385107  n/a   
 
 
-
 
NC_012792  Vapar_6150  transcriptional regulator, Crp/Fnr family  24.89 
 
 
226 aa  65.9  0.0000000006  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_009504  BOV_A0238  Crp/FNR family transcriptional regulator  25.43 
 
 
231 aa  65.9  0.0000000006  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3326  Crp/FNR family transcriptional regulator  23.79 
 
 
239 aa  65.5  0.0000000007  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_012856  Rpic12D_3062  transcriptional regulator, Crp/Fnr family  27.52 
 
 
232 aa  65.5  0.0000000007  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_0464  transcriptional regulator, Crp/Fnr family  28.24 
 
 
272 aa  65.5  0.0000000008  Acidovorax ebreus TPSY  Bacteria  normal  0.0498511  n/a   
 
 
-
 
NC_009953  Sare_3499  Crp/FNR family transcriptional regulator  25.33 
 
 
230 aa  65.1  0.000000001  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00506626 
 
 
-
 
NC_010424  Daud_1482  CRP/FNR family transcriptional regulator  26.21 
 
 
235 aa  64.7  0.000000001  Candidatus Desulforudis audaxviator MP104C  Bacteria  hitchhiker  0.000000238682  n/a   
 
 
-
 
NC_007298  Daro_0248  cyclic nucleotide-binding  30.67 
 
 
224 aa  63.9  0.000000002  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3511  Crp/FNR family transcriptional regulator  27.17 
 
 
233 aa  63.9  0.000000002  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_3395  Crp/FNR family transcriptional regulator  28.07 
 
 
225 aa  64.3  0.000000002  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_1262  CRP/FNR family transcriptional regulator  24.41 
 
 
222 aa  63.5  0.000000003  Desulfotomaculum reducens MI-1  Bacteria  normal  0.247212  n/a   
 
 
-
 
NC_011830  Dhaf_3158  transcriptional regulator, Crp/Fnr family  25.26 
 
 
223 aa  63.5  0.000000003  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_008044  TM1040_1951  Crp/FNR family transcriptional regulator  28.65 
 
 
222 aa  63.5  0.000000003  Ruegeria sp. TM1040  Bacteria  normal  0.861655  normal  0.0267012 
 
 
-
 
NC_008752  Aave_3075  Crp/FNR family transcriptional regulator  22.47 
 
 
239 aa  63.5  0.000000003  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.193734 
 
 
-
 
NC_009921  Franean1_5506  Crp/FNR family transcriptional regulator  27.37 
 
 
246 aa  63.2  0.000000004  Frankia sp. EAN1pec  Bacteria  normal  0.324567  normal  0.438631 
 
 
-
 
NC_011666  Msil_1523  transcriptional regulator, Crp/Fnr family  24.4 
 
 
231 aa  62.8  0.000000004  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_009511  Swit_2706  Crp/FNR family transcriptional regulator  27.07 
 
 
228 aa  62.8  0.000000005  Sphingomonas wittichii RW1  Bacteria  normal  0.154877  normal 
 
 
-
 
NC_011662  Tmz1t_1763  transcriptional regulator, Crp/Fnr family  27.45 
 
 
223 aa  62.8  0.000000005  Thauera sp. MZ1T  Bacteria  normal  0.796832  n/a   
 
 
-
 
NC_009621  Smed_6276  CRP/FNR family transcriptional regulator  24.71 
 
 
231 aa  62.4  0.000000006  Sinorhizobium medicae WSM419  Bacteria  normal  0.298402  normal  0.17195 
 
 
-
 
NC_013093  Amir_5511  transcriptional regulator, Crp/Fnr family  27.11 
 
 
227 aa  62  0.000000007  Actinosynnema mirum DSM 43827  Bacteria  normal  0.360617  n/a   
 
 
-
 
NC_008782  Ajs_0473  Crp/FNR family transcriptional regulator  27.65 
 
 
272 aa  62.4  0.000000007  Acidovorax sp. JS42  Bacteria  normal  normal  0.144164 
 
 
-
 
NC_009767  Rcas_3897  Crp/FNR family transcriptional regulator  27.07 
 
 
227 aa  62  0.000000007  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.280734  normal  0.887061 
 
 
-
 
NC_010002  Daci_3287  Crp/FNR family transcriptional regulator  24 
 
 
239 aa  62.4  0.000000007  Delftia acidovorans SPH-1  Bacteria  normal  0.370075  normal  0.683237 
 
 
-
 
NC_011886  Achl_3176  transcriptional regulator, Crp/Fnr family  27.49 
 
 
225 aa  62  0.000000008  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.231761 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>