More than 300 homologs were found in PanDaTox collection
for query gene Cthe_2574 on replicon NC_009012
Organism: Clostridium thermocellum ATCC 27405



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009012  Cthe_2574  binding-protein-dependent transport systems inner membrane component  100 
 
 
270 aa  527  1e-149  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_4556  binding-protein-dependent transport systems inner membrane component  65.13 
 
 
267 aa  366  1e-100  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_011898  Ccel_0879  binding-protein-dependent transport systems inner membrane component  63.06 
 
 
274 aa  343  2e-93  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.00112224  n/a   
 
 
-
 
NC_010320  Teth514_2295  binding-protein-dependent transport systems inner membrane component  60.74 
 
 
272 aa  342  5e-93  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_1834  binding-protein-dependent transport systems inner membrane component  61.98 
 
 
268 aa  329  4e-89  Desulfotomaculum reducens MI-1  Bacteria  normal  0.101401  n/a   
 
 
-
 
NC_011899  Hore_11490  binding-protein-dependent transport systems inner membrane component  53.01 
 
 
278 aa  290  3e-77  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000000965537  n/a   
 
 
-
 
NC_010001  Cphy_0802  binding-protein-dependent transport systems inner membrane component  46.74 
 
 
274 aa  239  2.9999999999999997e-62  Clostridium phytofermentans ISDg  Bacteria  normal  0.240571  n/a   
 
 
-
 
NC_012793  GWCH70_2784  binding-protein-dependent transport systems inner membrane component  42.91 
 
 
269 aa  225  6e-58  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_3456  binding-protein-dependent transport systems inner membrane component  46.59 
 
 
268 aa  224  1e-57  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.133558  n/a   
 
 
-
 
NC_013411  GYMC61_0589  binding-protein-dependent transport systems inner membrane component  45.56 
 
 
269 aa  221  8e-57  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_003909  BCE_4937  ABC transporter, permease protein  48.11 
 
 
268 aa  202  5e-51  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_4902  ABC transporter, permease protein  47.73 
 
 
268 aa  202  7e-51  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_005945  BAS4677  ABC transporter permease  47.73 
 
 
268 aa  202  7e-51  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK4536  ABC transporter, permease  47.73 
 
 
268 aa  202  7e-51  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_5038  ABC transporter permease  47.73 
 
 
268 aa  202  7e-51  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A4903  ABC transporter, permease protein  47.73 
 
 
268 aa  201  9e-51  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_4517  ABC transporter, permease  47.35 
 
 
268 aa  201  9.999999999999999e-51  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A4923  ABC transporter, permease protein  47.35 
 
 
268 aa  201  9.999999999999999e-51  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_4615  binding-protein-dependent transport systems inner membrane component  46.97 
 
 
268 aa  199  3e-50  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B0335  ABC transporter, permease protein  46.97 
 
 
268 aa  200  3e-50  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_009379  Pnuc_1181  binding-protein-dependent transport systems inner membrane component  34.32 
 
 
271 aa  163  3e-39  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_2777  binding-protein-dependent transport systems inner membrane component  32.92 
 
 
292 aa  153  4e-36  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_012857  Rpic12D_4149  binding-protein-dependent transport systems inner membrane component  32.71 
 
 
276 aa  147  2.0000000000000003e-34  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010678  Rpic_4037  binding-protein-dependent transport systems inner membrane component  32.71 
 
 
276 aa  147  2.0000000000000003e-34  Ralstonia pickettii 12J  Bacteria  normal  0.960786  normal 
 
 
-
 
NC_009668  Oant_3514  binding-protein-dependent transport systems inner membrane component  31.85 
 
 
295 aa  145  8.000000000000001e-34  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.739127  n/a   
 
 
-
 
NC_009720  Xaut_1531  binding-protein-dependent transport systems inner membrane component  33.7 
 
 
295 aa  141  9.999999999999999e-33  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_3961  binding-protein-dependent transport systems inner membrane component  35.15 
 
 
287 aa  139  4.999999999999999e-32  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007651  BTH_I0037  ABC transporter, permease protein  36.19 
 
 
259 aa  138  1e-31  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_011059  Paes_0622  binding-protein-dependent transport systems inner membrane component  33.89 
 
 
257 aa  137  2e-31  Prosthecochloris aestuarii DSM 271  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0231  binding-protein-dependent transport systems inner membrane component  28.31 
 
 
271 aa  137  2e-31  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008146  Mmcs_2524  binding-protein-dependent transport systems inner membrane component  31.25 
 
 
279 aa  136  3.0000000000000003e-31  Mycobacterium sp. MCS  Bacteria  normal  0.667278  n/a   
 
 
-
 
NC_008705  Mkms_2569  binding-protein-dependent transport systems inner membrane component  31.25 
 
 
279 aa  136  3.0000000000000003e-31  Mycobacterium sp. KMS  Bacteria  normal  0.568124  normal 
 
 
-
 
NC_007510  Bcep18194_A3216  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  35.2 
 
 
285 aa  136  4e-31  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B0493  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  33.33 
 
 
287 aa  135  6.0000000000000005e-31  Burkholderia xenovorans LB400  Bacteria  normal  0.114665  normal 
 
 
-
 
NC_010551  BamMC406_0033  binding-protein-dependent transport systems inner membrane component  35.2 
 
 
282 aa  134  9.999999999999999e-31  Burkholderia ambifaria MC40-6  Bacteria  normal  0.589022  normal 
 
 
-
 
NC_008390  Bamb_0024  binding-protein-dependent transport systems inner membrane component  35.2 
 
 
285 aa  135  9.999999999999999e-31  Burkholderia ambifaria AMMD  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_0034  binding-protein-dependent transport systems inner membrane component  34.54 
 
 
285 aa  134  1.9999999999999998e-30  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_2561  binding-protein-dependent transport systems inner membrane component  30.86 
 
 
279 aa  134  1.9999999999999998e-30  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_010676  Bphyt_4033  binding-protein-dependent transport systems inner membrane component  34.31 
 
 
287 aa  133  3e-30  Burkholderia phytofirmans PsJN  Bacteria  normal  0.753159  normal 
 
 
-
 
NC_009921  Franean1_3131  binding-protein-dependent transport systems inner membrane component  30 
 
 
281 aa  132  6e-30  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009669  Oant_4580  binding-protein-dependent transport systems inner membrane component  32.8 
 
 
257 aa  132  6.999999999999999e-30  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_3330  ABC transporter membrane spanning protein  31.78 
 
 
295 aa  129  4.0000000000000003e-29  Agrobacterium vitis S4  Bacteria  normal  0.730487  n/a   
 
 
-
 
NC_010622  Bphy_0957  binding-protein-dependent transport systems inner membrane component  30.42 
 
 
274 aa  129  4.0000000000000003e-29  Burkholderia phymatum STM815  Bacteria  normal  0.199065  normal 
 
 
-
 
NC_007951  Bxe_A2355  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  30.8 
 
 
274 aa  129  4.0000000000000003e-29  Burkholderia xenovorans LB400  Bacteria  normal  0.214574  normal  0.0382396 
 
 
-
 
NC_010508  Bcenmc03_0051  binding-protein-dependent transport systems inner membrane component  35.74 
 
 
282 aa  129  5.0000000000000004e-29  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_0038  binding-protein-dependent transport systems inner membrane component  35.74 
 
 
285 aa  129  5.0000000000000004e-29  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.090458  n/a   
 
 
-
 
NC_008254  Meso_0814  binding-protein-dependent transport systems inner membrane component  32.29 
 
 
270 aa  129  5.0000000000000004e-29  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_0032  binding-protein-dependent transport systems inner membrane component  35.74 
 
 
285 aa  129  5.0000000000000004e-29  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA2678  ABC transporter, permease protein  36.18 
 
 
285 aa  128  8.000000000000001e-29  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0253  ABC transporter, permease protein  36.18 
 
 
282 aa  128  9.000000000000001e-29  Burkholderia pseudomallei 1710b  Bacteria  normal  0.735185  n/a   
 
 
-
 
NC_009080  BMA10247_2699  ABC transporter, permease protein  36.18 
 
 
282 aa  128  9.000000000000001e-29  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3274  ABC transporter, permease protein  36.18 
 
 
282 aa  128  9.000000000000001e-29  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1853  ABC transporter, permease protein  36.18 
 
 
282 aa  128  9.000000000000001e-29  Burkholderia mallei NCTC 10229  Bacteria  normal  0.989072  n/a   
 
 
-
 
NC_009074  BURPS668_0040  ABC transporter, permease protein  36.18 
 
 
282 aa  128  9.000000000000001e-29  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0040  ABC transporter, permease protein  36.18 
 
 
282 aa  128  9.000000000000001e-29  Burkholderia pseudomallei 1106a  Bacteria  normal  0.522623  n/a   
 
 
-
 
NC_007778  RPB_3099  binding-protein dependent transport system inner membrane protein  34.84 
 
 
261 aa  126  4.0000000000000003e-28  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.578785 
 
 
-
 
NC_010681  Bphyt_1832  binding-protein-dependent transport systems inner membrane component  30.04 
 
 
274 aa  125  6e-28  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.146122 
 
 
-
 
NC_011004  Rpal_0950  binding-protein-dependent transport systems inner membrane component  34.76 
 
 
283 aa  124  1e-27  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.616045  n/a   
 
 
-
 
NC_009720  Xaut_3758  binding-protein-dependent transport systems inner membrane component  32.22 
 
 
256 aa  123  3e-27  Xanthobacter autotrophicus Py2  Bacteria  normal  normal 
 
 
-
 
NC_012792  Vapar_6052  binding-protein-dependent transport systems inner membrane component  32.44 
 
 
274 aa  123  3e-27  Variovorax paradoxus S110  Bacteria  normal  0.0454164  n/a   
 
 
-
 
NC_008254  Meso_2962  binding-protein-dependent transport systems inner membrane component  35.27 
 
 
280 aa  123  3e-27  Chelativorans sp. BNC1  Bacteria  normal  0.0794658  n/a   
 
 
-
 
NC_013525  Tter_1221  binding-protein-dependent transport systems inner membrane component  32.34 
 
 
246 aa  123  3e-27  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_011368  Rleg2_5341  binding-protein-dependent transport systems inner membrane component  29.32 
 
 
293 aa  122  7e-27  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.7364 
 
 
-
 
NC_010681  Bphyt_2097  binding-protein-dependent transport systems inner membrane component  34.65 
 
 
286 aa  122  8e-27  Burkholderia phytofirmans PsJN  Bacteria  normal  0.961582  normal 
 
 
-
 
NC_007948  Bpro_2274  binding-protein-dependent transport systems inner membrane component  29.96 
 
 
279 aa  121  9.999999999999999e-27  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_012848  Rleg_5061  binding-protein-dependent transport systems inner membrane component  28.92 
 
 
293 aa  121  9.999999999999999e-27  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.877762  normal  0.739003 
 
 
-
 
NC_008688  Pden_4882  binding-protein-dependent transport systems inner membrane component  30.9 
 
 
259 aa  121  9.999999999999999e-27  Paracoccus denitrificans PD1222  Bacteria  normal  0.947992  normal 
 
 
-
 
NC_007778  RPB_3093  binding-protein dependent transport system inner membrane protein  30.68 
 
 
259 aa  120  1.9999999999999998e-26  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.942666 
 
 
-
 
NC_010625  Bphy_6300  binding-protein-dependent transport systems inner membrane component  31.14 
 
 
272 aa  120  3e-26  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_014213  Mesil_3278  ABC transporter related protein  33.64 
 
 
257 aa  120  3e-26  Meiothermus silvanus DSM 9946  Bacteria  hitchhiker  0.000407876  normal  0.0335836 
 
 
-
 
NC_009012  Cthe_2803  binding-protein-dependent transport systems inner membrane component  27.94 
 
 
259 aa  120  3e-26  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.00122675  n/a   
 
 
-
 
NC_012791  Vapar_1862  binding-protein-dependent transport systems inner membrane component  31.72 
 
 
257 aa  120  3e-26  Variovorax paradoxus S110  Bacteria  normal  0.116723  n/a   
 
 
-
 
NC_009253  Dred_3205  binding-protein-dependent transport systems inner membrane component  32.44 
 
 
265 aa  119  4.9999999999999996e-26  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.000457845  n/a   
 
 
-
 
NC_007908  Rfer_3114  binding-protein-dependent transport systems inner membrane component  31.1 
 
 
294 aa  119  4.9999999999999996e-26  Rhodoferax ferrireducens T118  Bacteria  normal  0.0684117  n/a   
 
 
-
 
NC_012793  GWCH70_2621  binding-protein-dependent transport systems inner membrane component  27.31 
 
 
281 aa  119  4.9999999999999996e-26  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.00000218671  n/a   
 
 
-
 
NC_012791  Vapar_2336  binding-protein-dependent transport systems inner membrane component  35.53 
 
 
277 aa  119  7e-26  Variovorax paradoxus S110  Bacteria  normal  0.544063  n/a   
 
 
-
 
NC_007973  Rmet_2120  binding-protein-dependent transport systems inner membrane component  37.91 
 
 
263 aa  119  7e-26  Cupriavidus metallidurans CH34  Bacteria  normal  0.0243564  normal  0.0474626 
 
 
-
 
NC_007511  Bcep18194_B2062  nitrate/sulfonate/bicarbonate ABC transporter inner membrane protein  33.18 
 
 
280 aa  118  7.999999999999999e-26  Burkholderia sp. 383  Bacteria  normal  0.332807  normal  0.624531 
 
 
-
 
NC_007347  Reut_A2103  binding-protein dependent transport system inner membrane protein  35.9 
 
 
263 aa  117  9.999999999999999e-26  Ralstonia eutropha JMP134  Bacteria  normal  0.153016  n/a   
 
 
-
 
NC_011988  Avi_5406  ABC transporter membrane spanning protein  33.77 
 
 
251 aa  117  9.999999999999999e-26  Agrobacterium vitis S4  Bacteria  normal  0.408693  n/a   
 
 
-
 
NC_008786  Veis_1108  binding-protein-dependent transport systems inner membrane component  27.63 
 
 
255 aa  117  1.9999999999999998e-25  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.135552 
 
 
-
 
NC_009485  BBta_7629  putative ABC transporter permease protein  30.32 
 
 
282 aa  116  5e-25  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.262472  normal  0.441686 
 
 
-
 
NC_010625  Bphy_7235  binding-protein-dependent transport systems inner membrane component  33.94 
 
 
285 aa  115  6.9999999999999995e-25  Burkholderia phymatum STM815  Bacteria  normal  0.266674  normal 
 
 
-
 
NC_011004  Rpal_4641  binding-protein-dependent transport systems inner membrane component  28.05 
 
 
277 aa  115  6.9999999999999995e-25  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.750363  n/a   
 
 
-
 
NC_008061  Bcen_4345  binding-protein-dependent transport systems inner membrane component  34.31 
 
 
280 aa  115  6.9999999999999995e-25  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.821403  n/a   
 
 
-
 
NC_008543  Bcen2424_4021  binding-protein-dependent transport systems inner membrane component  34.31 
 
 
280 aa  115  6.9999999999999995e-25  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc1200  transmembrane permease ABC transporter protein  32.64 
 
 
263 aa  115  7.999999999999999e-25  Ralstonia solanacearum GMI1000  Bacteria  normal  0.441856  normal  0.826922 
 
 
-
 
NC_010625  Bphy_6203  binding-protein-dependent transport systems inner membrane component  29.07 
 
 
284 aa  115  8.999999999999998e-25  Burkholderia phymatum STM815  Bacteria  normal  0.780444  normal  0.280504 
 
 
-
 
NC_009952  Dshi_2545  binding-protein-dependent transport system protein  28.21 
 
 
287 aa  114  1.0000000000000001e-24  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.240068  normal  0.521676 
 
 
-
 
NC_010682  Rpic_1044  binding-protein-dependent transport systems inner membrane component  33.06 
 
 
263 aa  114  1.0000000000000001e-24  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_4522  binding-protein-dependent transport systems inner membrane component  27.9 
 
 
329 aa  115  1.0000000000000001e-24  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3008  binding-protein-dependent transport systems inner membrane component  29.64 
 
 
280 aa  115  1.0000000000000001e-24  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_0620  binding-protein-dependent transport systems inner membrane component  34.97 
 
 
254 aa  114  1.0000000000000001e-24  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.63161  normal 
 
 
-
 
NC_012856  Rpic12D_1136  binding-protein-dependent transport systems inner membrane component  32.65 
 
 
263 aa  114  2.0000000000000002e-24  Ralstonia pickettii 12D  Bacteria  normal  0.629035  normal  0.968824 
 
 
-
 
NC_014165  Tbis_1380  binding-protein-dependent transporter inner membrane component  28.84 
 
 
277 aa  114  2.0000000000000002e-24  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.153307 
 
 
-
 
NC_005945  BAS2712  sulfonate ABC transporter permease  28.37 
 
 
282 aa  113  3e-24  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_2920  sulfonate ABC transporter permease protein  28.37 
 
 
282 aa  113  3e-24  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_010515  Bcenmc03_3503  binding-protein-dependent transport systems inner membrane component  33.82 
 
 
280 aa  113  3e-24  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.42159  decreased coverage  0.0001708 
 
 
-
 
NC_011981  Avi_7221  ABC transporter membrane spanning protein (nitrate/sulfonates)  30.81 
 
 
282 aa  113  3e-24  Agrobacterium vitis S4  Bacteria  normal  0.735165  n/a   
 
 
-
 
NC_009674  Bcer98_1998  binding-protein-dependent transport systems inner membrane component  25.32 
 
 
283 aa  113  4.0000000000000004e-24  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.894639  n/a   
 
 
-
 
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